data_100D # _model_server_result.job_id R48qEMCBciBrnlOK6p146g _model_server_result.datetime_utc '2025-02-12 04:54:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 100d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":21}' # _entry.id 100D # _exptl.entry_id 100D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 202.34 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPERMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 100D _cell.length_a 23.98 _cell.length_b 40.77 _cell.length_c 44.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 100D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 C 1 A C 1 1_555 B N1 G 10 B G 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 C 1 A C 1 1_555 B O6 G 10 B G 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 C 1 A C 1 1_555 B N2 G 10 B G 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 2 A DC 2 1_555 B N1 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 2 A DC 2 1_555 B O6 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 2 A DC 2 1_555 B N2 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DG 3 A DG 3 1_555 B N3 DC 8 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N2 DG 3 A DG 3 1_555 B O2 DC 8 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O6 DG 3 A DG 3 1_555 B N4 DC 8 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 7 B DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 7 B DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 7 B DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DC 5 A DC 5 1_555 B N1 DG 6 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 DC 5 A DC 5 1_555 B O6 DG 6 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 DC 5 A DC 5 1_555 B N2 DG 6 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N1 DG 6 A DG 6 1_555 B N3 DC 5 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N2 DG 6 A DG 6 1_555 B O2 DC 5 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O6 DG 6 A DG 6 1_555 B N4 DC 5 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DC 7 A DC 7 1_555 B N1 DG 4 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N4 DC 7 A DC 7 1_555 B O6 DG 4 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O2 DC 7 A DC 7 1_555 B N2 DG 4 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 DC 8 A DC 8 1_555 B N1 DG 3 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N4 DC 8 A DC 8 1_555 B O6 DG 3 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O2 DC 8 A DC 8 1_555 B N2 DG 3 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N1 DG 9 A DG 9 1_555 B N3 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N2 DG 9 A DG 9 1_555 B O2 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O6 DG 9 A DG 9 1_555 B N4 DC 2 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N1 G 10 A G 10 1_555 B N3 C 1 B C 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N2 G 10 A G 10 1_555 B O2 C 1 B C 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A O6 G 10 A G 10 1_555 B N4 C 1 B C 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H26 N4' _chem_comp.formula_weight 202.34 _chem_comp.id SPM _chem_comp.mon_nstd_flag . _chem_comp.name SPERMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 SPM sing 153 n n N1 HN11 SPM sing 154 n n N1 HN12 SPM sing 155 n n C2 C3 SPM sing 156 n n C2 H21 SPM sing 157 n n C2 H22 SPM sing 158 n n C3 C4 SPM sing 159 n n C3 H31 SPM sing 160 n n C3 H32 SPM sing 161 n n C4 N5 SPM sing 162 n n C4 H41 SPM sing 163 n n C4 H42 SPM sing 164 n n N5 C6 SPM sing 165 n n N5 HN5 SPM sing 166 n n C6 C7 SPM sing 167 n n C6 H61 SPM sing 168 n n C6 H62 SPM sing 169 n n C7 C8 SPM sing 170 n n C7 H71 SPM sing 171 n n C7 H72 SPM sing 172 n n C8 C9 SPM sing 173 n n C8 H81 SPM sing 174 n n C8 H82 SPM sing 175 n n C9 N10 SPM sing 176 n n C9 H91 SPM sing 177 n n C9 H92 SPM sing 178 n n N10 C11 SPM sing 179 n n N10 HN0 SPM sing 180 n n C11 C12 SPM sing 181 n n C11 H111 SPM sing 182 n n C11 H112 SPM sing 183 n n C12 C13 SPM sing 184 n n C12 H121 SPM sing 185 n n C12 H122 SPM sing 186 n n C13 N14 SPM sing 187 n n C13 H131 SPM sing 188 n n C13 H132 SPM sing 189 n n N14 HN41 SPM sing 190 n n N14 HN42 SPM sing 191 n n # _atom_sites.entry_id 100D _atom_sites.fract_transf_matrix[1][1] 0.041701 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024528 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022302 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SPM A 1 21 21 SPM SPM . D 3 HOH A 1 25 25 HOH HOH . D 3 HOH A 2 28 28 HOH HOH . D 3 HOH A 3 29 29 HOH HOH . D 3 HOH A 4 30 30 HOH HOH . D 3 HOH A 5 31 31 HOH HOH . D 3 HOH A 6 32 32 HOH HOH . D 3 HOH A 7 34 34 HOH HOH . D 3 HOH A 8 36 36 HOH HOH . D 3 HOH A 9 37 37 HOH HOH . D 3 HOH A 10 39 39 HOH HOH . D 3 HOH A 11 40 40 HOH HOH . D 3 HOH A 12 41 41 HOH HOH . D 3 HOH A 13 42 42 HOH HOH . D 3 HOH A 14 43 43 HOH HOH . D 3 HOH A 15 44 44 HOH HOH . D 3 HOH A 16 46 46 HOH HOH . D 3 HOH A 17 50 50 HOH HOH . D 3 HOH A 18 54 54 HOH HOH . D 3 HOH A 19 55 55 HOH HOH . D 3 HOH A 20 56 56 HOH HOH . D 3 HOH A 21 58 58 HOH HOH . D 3 HOH A 22 60 60 HOH HOH . D 3 HOH A 23 62 62 HOH HOH . D 3 HOH A 24 63 63 HOH HOH . D 3 HOH A 25 64 64 HOH HOH . D 3 HOH A 26 66 66 HOH HOH . D 3 HOH A 27 67 67 HOH HOH . D 3 HOH A 28 68 68 HOH HOH . D 3 HOH A 29 73 73 HOH HOH . D 3 HOH A 30 74 74 HOH HOH . D 3 HOH A 31 75 75 HOH HOH . D 3 HOH A 32 80 80 HOH HOH . D 3 HOH A 33 81 81 HOH HOH . D 3 HOH A 34 82 82 HOH HOH . D 3 HOH A 35 83 83 HOH HOH . D 3 HOH A 36 84 84 HOH HOH . D 3 HOH A 37 86 86 HOH HOH . D 3 HOH A 38 87 87 HOH HOH . E 3 HOH B 1 22 22 HOH HOH . E 3 HOH B 2 23 23 HOH HOH . E 3 HOH B 3 24 24 HOH HOH . E 3 HOH B 4 26 26 HOH HOH . E 3 HOH B 5 27 27 HOH HOH . E 3 HOH B 6 33 33 HOH HOH . E 3 HOH B 7 35 35 HOH HOH . E 3 HOH B 8 38 38 HOH HOH . E 3 HOH B 9 45 45 HOH HOH . E 3 HOH B 10 47 47 HOH HOH . E 3 HOH B 11 48 48 HOH HOH . E 3 HOH B 12 49 49 HOH HOH . E 3 HOH B 13 51 51 HOH HOH . E 3 HOH B 14 52 52 HOH HOH . E 3 HOH B 15 53 53 HOH HOH . E 3 HOH B 16 57 57 HOH HOH . E 3 HOH B 17 59 59 HOH HOH . E 3 HOH B 18 61 61 HOH HOH . E 3 HOH B 19 65 65 HOH HOH . E 3 HOH B 20 69 69 HOH HOH . E 3 HOH B 21 70 70 HOH HOH . E 3 HOH B 22 71 71 HOH HOH . E 3 HOH B 23 72 72 HOH HOH . E 3 HOH B 24 76 76 HOH HOH . E 3 HOH B 25 77 77 HOH HOH . E 3 HOH B 26 78 78 HOH HOH . E 3 HOH B 27 79 79 HOH HOH . E 3 HOH B 28 85 85 HOH HOH . E 3 HOH B 29 88 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 SPM . . . C 2 10.683 -8.783 22.839 1 40.13 ? N1 SPM 21 A 1 HETATM 2 C C2 SPM . . . C 2 11.531 -7.621 23.379 1 38.06 ? C2 SPM 21 A 1 HETATM 3 C C3 SPM . . . C 2 10.826 -6.312 23.033 1 36.69 ? C3 SPM 21 A 1 HETATM 4 C C4 SPM . . . C 2 11.754 -5.116 22.994 1 35.02 ? C4 SPM 21 A 1 HETATM 5 N N5 SPM . . . C 2 10.958 -3.909 22.549 1 32.86 ? N5 SPM 21 A 1 HETATM 6 C C6 SPM . . . C 2 12.018 -2.878 22.231 1 32.94 ? C6 SPM 21 A 1 HETATM 7 C C7 SPM . . . C 2 11.419 -1.515 22.22 1 31.05 ? C7 SPM 21 A 1 HETATM 8 C C8 SPM . . . C 2 12.46 -0.586 21.671 1 30.79 ? C8 SPM 21 A 1 HETATM 9 C C9 SPM . . . C 2 12.057 0.847 21.888 1 28.48 ? C9 SPM 21 A 1 HETATM 10 N N10 SPM . . . C 2 13.064 1.749 21.221 1 28.45 ? N10 SPM 21 A 1 HETATM 11 C C11 SPM . . . C 2 13.493 2.749 22.27 1 30.71 ? C11 SPM 21 A 1 HETATM 12 C C12 SPM . . . C 2 14.237 3.946 21.699 1 31.37 ? C12 SPM 21 A 1 HETATM 13 C C13 SPM . . . C 2 14.691 4.712 22.92 1 32.44 ? C13 SPM 21 A 1 HETATM 14 N N14 SPM . . . C 2 14.46 6.175 22.642 1 34.72 ? N14 SPM 21 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #