data_103L # _model_server_result.job_id tk5HCn3beopFxYGugZNMeQ _model_server_result.datetime_utc '2025-02-12 05:09:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 103l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":900}' # _entry.id 103L # _exptl.entry_id 103L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 103L _cell.length_a 60.9 _cell.length_b 60.9 _cell.length_c 95.6 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 103L _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id S2 _struct_conn.ptnr1_label_comp_id BME _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id BME _struct_conn.ptnr1_auth_seq_id 900 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id S2 _struct_conn.ptnr2_label_comp_id BME _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id BME _struct_conn.ptnr2_auth_seq_id 900 _struct_conn.ptnr2_symmetry 5_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.755 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 70 n n C1 O1 BME sing 71 n n C1 H11 BME sing 72 n n C1 H12 BME sing 73 n n C2 S2 BME sing 74 n n C2 H21 BME sing 75 n n C2 H22 BME sing 76 n n O1 HO1 BME sing 77 n n S2 HS2 BME sing 78 n n # _atom_sites.entry_id 103L _atom_sites.fract_transf_matrix[1][1] 0.01642 _atom_sites.fract_transf_matrix[1][2] 0.00948 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018961 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01046 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 173 173 CL CL . C 2 CL A 1 178 178 CL CL . D 3 BME A 1 900 900 BME SEO . E 4 HOH A 1 171 171 HOH HOH . E 4 HOH A 2 172 172 HOH HOH . E 4 HOH A 3 174 174 HOH HOH . E 4 HOH A 4 175 175 HOH HOH . E 4 HOH A 5 177 177 HOH HOH . E 4 HOH A 6 179 179 HOH HOH . E 4 HOH A 7 180 180 HOH HOH . E 4 HOH A 8 181 181 HOH HOH . E 4 HOH A 9 182 182 HOH HOH . E 4 HOH A 10 183 183 HOH HOH . E 4 HOH A 11 184 184 HOH HOH . E 4 HOH A 12 185 185 HOH HOH . E 4 HOH A 13 186 186 HOH HOH . E 4 HOH A 14 187 187 HOH HOH . E 4 HOH A 15 188 188 HOH HOH . E 4 HOH A 16 189 189 HOH HOH . E 4 HOH A 17 192 192 HOH HOH . E 4 HOH A 18 193 193 HOH HOH . E 4 HOH A 19 194 194 HOH HOH . E 4 HOH A 20 195 195 HOH HOH . E 4 HOH A 21 196 196 HOH HOH . E 4 HOH A 22 197 197 HOH HOH . E 4 HOH A 23 198 198 HOH HOH . E 4 HOH A 24 200 200 HOH HOH . E 4 HOH A 25 201 201 HOH HOH . E 4 HOH A 26 202 202 HOH HOH . E 4 HOH A 27 203 203 HOH HOH . E 4 HOH A 28 204 204 HOH HOH . E 4 HOH A 29 206 206 HOH HOH . E 4 HOH A 30 207 207 HOH HOH . E 4 HOH A 31 208 208 HOH HOH . E 4 HOH A 32 210 210 HOH HOH . E 4 HOH A 33 211 211 HOH HOH . E 4 HOH A 34 212 212 HOH HOH . E 4 HOH A 35 213 213 HOH HOH . E 4 HOH A 36 214 214 HOH HOH . E 4 HOH A 37 215 215 HOH HOH . E 4 HOH A 38 216 216 HOH HOH . E 4 HOH A 39 217 217 HOH HOH . E 4 HOH A 40 218 218 HOH HOH . E 4 HOH A 41 219 219 HOH HOH . E 4 HOH A 42 220 220 HOH HOH . E 4 HOH A 43 223 223 HOH HOH . E 4 HOH A 44 224 224 HOH HOH . E 4 HOH A 45 225 225 HOH HOH . E 4 HOH A 46 226 226 HOH HOH . E 4 HOH A 47 227 227 HOH HOH . E 4 HOH A 48 228 228 HOH HOH . E 4 HOH A 49 229 229 HOH HOH . E 4 HOH A 50 231 231 HOH HOH . E 4 HOH A 51 232 232 HOH HOH . E 4 HOH A 52 234 234 HOH HOH . E 4 HOH A 53 235 235 HOH HOH . E 4 HOH A 54 236 236 HOH HOH . E 4 HOH A 55 237 237 HOH HOH . E 4 HOH A 56 238 238 HOH HOH . E 4 HOH A 57 239 239 HOH HOH . E 4 HOH A 58 240 240 HOH HOH . E 4 HOH A 59 242 242 HOH HOH . E 4 HOH A 60 244 244 HOH HOH . E 4 HOH A 61 245 245 HOH HOH . E 4 HOH A 62 246 246 HOH HOH . E 4 HOH A 63 247 247 HOH HOH . E 4 HOH A 64 248 248 HOH HOH . E 4 HOH A 65 249 249 HOH HOH . E 4 HOH A 66 250 250 HOH HOH . E 4 HOH A 67 251 251 HOH HOH . E 4 HOH A 68 253 253 HOH HOH . E 4 HOH A 69 254 254 HOH HOH . E 4 HOH A 70 256 256 HOH HOH . E 4 HOH A 71 257 257 HOH HOH . E 4 HOH A 72 259 259 HOH HOH . E 4 HOH A 73 261 261 HOH HOH . E 4 HOH A 74 263 263 HOH HOH . E 4 HOH A 75 266 266 HOH HOH . E 4 HOH A 76 267 267 HOH HOH . E 4 HOH A 77 268 268 HOH HOH . E 4 HOH A 78 269 269 HOH HOH . E 4 HOH A 79 270 270 HOH HOH . E 4 HOH A 80 271 271 HOH HOH . E 4 HOH A 81 272 272 HOH HOH . E 4 HOH A 82 273 273 HOH HOH . E 4 HOH A 83 274 274 HOH HOH . E 4 HOH A 84 276 276 HOH HOH . E 4 HOH A 85 277 277 HOH HOH . E 4 HOH A 86 278 278 HOH HOH . E 4 HOH A 87 281 281 HOH HOH . E 4 HOH A 88 283 283 HOH HOH . E 4 HOH A 89 285 285 HOH HOH . E 4 HOH A 90 286 286 HOH HOH . E 4 HOH A 91 288 288 HOH HOH . E 4 HOH A 92 289 289 HOH HOH . E 4 HOH A 93 291 291 HOH HOH . E 4 HOH A 94 292 292 HOH HOH . E 4 HOH A 95 293 293 HOH HOH . E 4 HOH A 96 294 294 HOH HOH . E 4 HOH A 97 295 295 HOH HOH . E 4 HOH A 98 296 296 HOH HOH . E 4 HOH A 99 297 297 HOH HOH . E 4 HOH A 100 298 298 HOH HOH . E 4 HOH A 101 299 299 HOH HOH . E 4 HOH A 102 300 300 HOH HOH . E 4 HOH A 103 302 302 HOH HOH . E 4 HOH A 104 303 303 HOH HOH . E 4 HOH A 105 304 304 HOH HOH . E 4 HOH A 106 308 308 HOH HOH . E 4 HOH A 107 311 311 HOH HOH . E 4 HOH A 108 312 312 HOH HOH . E 4 HOH A 109 313 313 HOH HOH . E 4 HOH A 110 314 314 HOH HOH . E 4 HOH A 111 318 318 HOH HOH . E 4 HOH A 112 321 321 HOH HOH . E 4 HOH A 113 322 322 HOH HOH . E 4 HOH A 114 323 323 HOH HOH . E 4 HOH A 115 324 324 HOH HOH . E 4 HOH A 116 325 325 HOH HOH . E 4 HOH A 117 326 326 HOH HOH . E 4 HOH A 118 327 327 HOH HOH . E 4 HOH A 119 328 328 HOH HOH . E 4 HOH A 120 329 329 HOH HOH . E 4 HOH A 121 330 330 HOH HOH . E 4 HOH A 122 331 331 HOH HOH . E 4 HOH A 123 332 332 HOH HOH . E 4 HOH A 124 333 333 HOH HOH . E 4 HOH A 125 334 334 HOH HOH . E 4 HOH A 126 335 335 HOH HOH . E 4 HOH A 127 336 336 HOH HOH . E 4 HOH A 128 337 337 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . D 3 32.522 1.106 19.057 1 32.83 ? C1 BME 900 A 1 HETATM 2 C C2 BME . . . D 3 32.068 1.442 17.64 1 20.96 ? C2 BME 900 A 1 HETATM 3 O O1 BME . . . D 3 33.748 1.707 19.337 1 20.68 ? O1 BME 900 A 1 HETATM 4 S S2 BME . . . D 3 33.232 0.728 16.423 1 66.31 ? S2 BME 900 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 504 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #