data_103M
#
_model_server_result.job_id            lHj8vUzVS3XkYCO3SR3Jug 
_model_server_result.datetime_utc      '2024-12-23 14:57:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          103m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":155}' 
#
_entry.id    103M 
#
_exptl.entry_id    103M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            103M 
_cell.length_a            91.63 
_cell.length_b            91.63 
_cell.length_c            46.014 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 103M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        168 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 6' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 C FE HEM . A HEM 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc2 C FE HEM . A HEM 155 1_555 D C NBN . A NBN 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 116 n n 
CHA C4D HEM doub 117 n n 
CHA HHA HEM sing 118 n n 
CHB C4A HEM sing 119 n n 
CHB C1B HEM doub 120 n n 
CHB HHB HEM sing 121 n n 
CHC C4B HEM sing 122 n n 
CHC C1C HEM doub 123 n n 
CHC HHC HEM sing 124 n n 
CHD C4C HEM doub 125 n n 
CHD C1D HEM sing 126 n n 
CHD HHD HEM sing 127 n n 
C1A C2A HEM doub 128 n y 
C1A NA HEM sing 129 n y 
C2A C3A HEM sing 130 n y 
C2A CAA HEM sing 131 n n 
C3A C4A HEM doub 132 n y 
C3A CMA HEM sing 133 n n 
C4A NA HEM sing 134 n y 
CMA HMA HEM sing 135 n n 
CMA HMAA HEM sing 136 n n 
CMA HMAB HEM sing 137 n n 
CAA CBA HEM sing 138 n n 
CAA HAA HEM sing 139 n n 
CAA HAAA HEM sing 140 n n 
CBA CGA HEM sing 141 n n 
CBA HBA HEM sing 142 n n 
CBA HBAA HEM sing 143 n n 
CGA O1A HEM doub 144 n n 
CGA O2A HEM sing 145 n n 
C1B C2B HEM sing 146 n n 
C1B NB HEM sing 147 n n 
C2B C3B HEM doub 148 n n 
C2B CMB HEM sing 149 n n 
C3B C4B HEM sing 150 n n 
C3B CAB HEM sing 151 n n 
C4B NB HEM doub 152 n n 
CMB HMB HEM sing 153 n n 
CMB HMBA HEM sing 154 n n 
CMB HMBB HEM sing 155 n n 
CAB CBB HEM doub 156 n n 
CAB HAB HEM sing 157 n n 
CBB HBB HEM sing 158 n n 
CBB HBBA HEM sing 159 n n 
C1C C2C HEM sing 160 n y 
C1C NC HEM sing 161 n y 
C2C C3C HEM doub 162 n y 
C2C CMC HEM sing 163 n n 
C3C C4C HEM sing 164 n y 
C3C CAC HEM sing 165 n n 
C4C NC HEM sing 166 n y 
CMC HMC HEM sing 167 n n 
CMC HMCA HEM sing 168 n n 
CMC HMCB HEM sing 169 n n 
CAC CBC HEM doub 170 n n 
CAC HAC HEM sing 171 n n 
CBC HBC HEM sing 172 n n 
CBC HBCA HEM sing 173 n n 
C1D C2D HEM sing 174 n n 
C1D ND HEM doub 175 n n 
C2D C3D HEM doub 176 n n 
C2D CMD HEM sing 177 n n 
C3D C4D HEM sing 178 n n 
C3D CAD HEM sing 179 n n 
C4D ND HEM sing 180 n n 
CMD HMD HEM sing 181 n n 
CMD HMDA HEM sing 182 n n 
CMD HMDB HEM sing 183 n n 
CAD CBD HEM sing 184 n n 
CAD HAD HEM sing 185 n n 
CAD HADA HEM sing 186 n n 
CBD CGD HEM sing 187 n n 
CBD HBD HEM sing 188 n n 
CBD HBDA HEM sing 189 n n 
CGD O1D HEM doub 190 n n 
CGD O2D HEM sing 191 n n 
O2A H2A HEM sing 192 n n 
O2D H2D HEM sing 193 n n 
FE NA HEM sing 194 n n 
FE NB HEM sing 195 n n 
FE NC HEM sing 196 n n 
FE ND HEM sing 197 n n 
#
_atom_sites.entry_id                     103M 
_atom_sites.fract_transf_matrix[1][1]    0.010913 
_atom_sites.fract_transf_matrix[1][2]    0.006301 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012602 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021733 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 157 157 SO4 SO4 . 
C 3 HEM A 1 155 155 HEM HEM . 
D 4 NBN A 1 156 156 NBN NBN . 
E 5 HOH A 1 201 201 HOH HOH . 
E 5 HOH A 2 202 202 HOH HOH . 
E 5 HOH A 3 203 203 HOH HOH . 
E 5 HOH A 4 204 204 HOH HOH . 
E 5 HOH A 5 205 205 HOH HOH . 
E 5 HOH A 6 206 206 HOH HOH . 
E 5 HOH A 7 207 207 HOH HOH . 
E 5 HOH A 8 208 208 HOH HOH . 
E 5 HOH A 9 209 209 HOH HOH . 
E 5 HOH A 10 210 210 HOH HOH . 
E 5 HOH A 11 211 211 HOH HOH . 
E 5 HOH A 12 212 212 HOH HOH . 
E 5 HOH A 13 213 213 HOH HOH . 
E 5 HOH A 14 214 214 HOH HOH . 
E 5 HOH A 15 215 215 HOH HOH . 
E 5 HOH A 16 216 216 HOH HOH . 
E 5 HOH A 17 217 217 HOH HOH . 
E 5 HOH A 18 218 218 HOH HOH . 
E 5 HOH A 19 219 219 HOH HOH . 
E 5 HOH A 20 220 220 HOH HOH . 
E 5 HOH A 21 221 221 HOH HOH . 
E 5 HOH A 22 222 222 HOH HOH . 
E 5 HOH A 23 223 223 HOH HOH . 
E 5 HOH A 24 224 224 HOH HOH . 
E 5 HOH A 25 225 225 HOH HOH . 
E 5 HOH A 26 226 226 HOH HOH . 
E 5 HOH A 27 227 227 HOH HOH . 
E 5 HOH A 28 228 228 HOH HOH . 
E 5 HOH A 29 229 229 HOH HOH . 
E 5 HOH A 30 230 230 HOH HOH . 
E 5 HOH A 31 231 231 HOH HOH . 
E 5 HOH A 32 232 232 HOH HOH . 
E 5 HOH A 33 233 233 HOH HOH . 
E 5 HOH A 34 234 234 HOH HOH . 
E 5 HOH A 35 235 235 HOH HOH . 
E 5 HOH A 36 236 236 HOH HOH . 
E 5 HOH A 37 237 237 HOH HOH . 
E 5 HOH A 38 238 238 HOH HOH . 
E 5 HOH A 39 239 239 HOH HOH . 
E 5 HOH A 40 240 240 HOH HOH . 
E 5 HOH A 41 241 241 HOH HOH . 
E 5 HOH A 42 242 242 HOH HOH . 
E 5 HOH A 43 243 243 HOH HOH . 
E 5 HOH A 44 244 244 HOH HOH . 
E 5 HOH A 45 245 245 HOH HOH . 
E 5 HOH A 46 246 246 HOH HOH . 
E 5 HOH A 47 247 247 HOH HOH . 
E 5 HOH A 48 248 248 HOH HOH . 
E 5 HOH A 49 249 249 HOH HOH . 
E 5 HOH A 50 250 250 HOH HOH . 
E 5 HOH A 51 251 251 HOH HOH . 
E 5 HOH A 52 252 252 HOH HOH . 
E 5 HOH A 53 253 253 HOH HOH . 
E 5 HOH A 54 254 254 HOH HOH . 
E 5 HOH A 55 255 255 HOH HOH . 
E 5 HOH A 56 256 256 HOH HOH . 
E 5 HOH A 57 257 257 HOH HOH . 
E 5 HOH A 58 258 258 HOH HOH . 
E 5 HOH A 59 259 259 HOH HOH . 
E 5 HOH A 60 260 260 HOH HOH . 
E 5 HOH A 61 261 261 HOH HOH . 
E 5 HOH A 62 262 262 HOH HOH . 
E 5 HOH A 63 263 263 HOH HOH . 
E 5 HOH A 64 264 264 HOH HOH . 
E 5 HOH A 65 265 265 HOH HOH . 
E 5 HOH A 66 266 266 HOH HOH . 
E 5 HOH A 67 267 267 HOH HOH . 
E 5 HOH A 68 268 268 HOH HOH . 
E 5 HOH A 69 269 269 HOH HOH . 
E 5 HOH A 70 270 270 HOH HOH . 
E 5 HOH A 71 271 271 HOH HOH . 
E 5 HOH A 72 272 272 HOH HOH . 
E 5 HOH A 73 273 273 HOH HOH . 
E 5 HOH A 74 274 274 HOH HOH . 
E 5 HOH A 75 275 275 HOH HOH . 
E 5 HOH A 76 276 276 HOH HOH . 
E 5 HOH A 77 277 277 HOH HOH . 
E 5 HOH A 78 278 278 HOH HOH . 
E 5 HOH A 79 279 279 HOH HOH . 
E 5 HOH A 80 280 280 HOH HOH . 
E 5 HOH A 81 281 281 HOH HOH . 
E 5 HOH A 82 282 282 HOH HOH . 
E 5 HOH A 83 283 283 HOH HOH . 
E 5 HOH A 84 284 284 HOH HOH . 
E 5 HOH A 85 285 285 HOH HOH . 
E 5 HOH A 86 286 286 HOH HOH . 
E 5 HOH A 87 287 287 HOH HOH . 
E 5 HOH A 88 288 288 HOH HOH . 
E 5 HOH A 89 289 289 HOH HOH . 
E 5 HOH A 90 290 290 HOH HOH . 
E 5 HOH A 91 291 291 HOH HOH . 
E 5 HOH A 92 292 292 HOH HOH . 
E 5 HOH A 93 293 293 HOH HOH . 
E 5 HOH A 94 294 294 HOH HOH . 
E 5 HOH A 95 295 295 HOH HOH . 
E 5 HOH A 96 296 296 HOH HOH . 
E 5 HOH A 97 297 297 HOH HOH . 
E 5 HOH A 98 298 298 HOH HOH . 
E 5 HOH A 99 299 299 HOH HOH . 
E 5 HOH A 100 300 300 HOH HOH . 
E 5 HOH A 101 301 301 HOH HOH . 
E 5 HOH A 102 302 302 HOH HOH . 
E 5 HOH A 103 303 303 HOH HOH . 
E 5 HOH A 104 304 304 HOH HOH . 
E 5 HOH A 105 305 305 HOH HOH . 
E 5 HOH A 106 306 306 HOH HOH . 
E 5 HOH A 107 307 307 HOH HOH . 
E 5 HOH A 108 308 308 HOH HOH . 
E 5 HOH A 109 309 309 HOH HOH . 
E 5 HOH A 110 310 310 HOH HOH . 
E 5 HOH A 111 311 311 HOH HOH . 
E 5 HOH A 112 312 312 HOH HOH . 
E 5 HOH A 113 313 313 HOH HOH . 
E 5 HOH A 114 314 314 HOH HOH . 
E 5 HOH A 115 315 315 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 3 38.021 2.182 11.301 1 22.02 ? CHA HEM 155 A 1 
HETATM 2 C CHB HEM . . . C 3 37.352 5.209 7.603 1 19.56 ? CHB HEM 155 A 1 
HETATM 3 C CHC HEM . . . C 3 32.927 6.106 9.138 1 19.13 ? CHC HEM 155 A 1 
HETATM 4 C CHD HEM . . . C 3 33.569 3.153 12.832 1 20.88 ? CHD HEM 155 A 1 
HETATM 5 C C1A HEM . . . C 3 38.237 2.947 10.172 1 22.62 ? C1A HEM 155 A 1 
HETATM 6 C C2A HEM . . . C 3 39.516 3 9.425 1 22.71 ? C2A HEM 155 A 1 
HETATM 7 C C3A HEM . . . C 3 39.294 3.868 8.389 1 21.4 ? C3A HEM 155 A 1 
HETATM 8 C C4A HEM . . . C 3 37.923 4.347 8.495 1 20.98 ? C4A HEM 155 A 1 
HETATM 9 C CMA HEM . . . C 3 40.246 4.222 7.272 1 20.03 ? CMA HEM 155 A 1 
HETATM 10 C CAA HEM . . . C 3 40.794 2.16 9.524 1 24.77 ? CAA HEM 155 A 1 
HETATM 11 C CBA HEM . . . C 3 40.895 0.659 9.219 1 28.89 ? CBA HEM 155 A 1 
HETATM 12 C CGA HEM . . . C 3 39.546 -0.017 8.922 1 30.87 ? CGA HEM 155 A 1 
HETATM 13 O O1A HEM . . . C 3 38.943 -0.581 9.866 1 32.76 ? O1A HEM 155 A 1 
HETATM 14 O O2A HEM . . . C 3 39.096 -0.002 7.747 1 32.38 ? O2A HEM 155 A 1 
HETATM 15 C C1B HEM . . . C 3 36.056 5.671 7.66 1 19.68 ? C1B HEM 155 A 1 
HETATM 16 C C2B HEM . . . C 3 35.461 6.641 6.708 1 18.79 ? C2B HEM 155 A 1 
HETATM 17 C C3B HEM . . . C 3 34.23 6.909 7.144 1 18.65 ? C3B HEM 155 A 1 
HETATM 18 C C4B HEM . . . C 3 34.053 6.085 8.352 1 18.66 ? C4B HEM 155 A 1 
HETATM 19 C CMB HEM . . . C 3 36.101 7.176 5.422 1 19.19 ? CMB HEM 155 A 1 
HETATM 20 C CAB HEM . . . C 3 33.344 7.934 6.761 1 18.22 ? CAB HEM 155 A 1 
HETATM 21 C CBB HEM . . . C 3 33.471 9.08 5.874 1 18.27 ? CBB HEM 155 A 1 
HETATM 22 C C1C HEM . . . C 3 32.7 5.417 10.309 1 18.86 ? C1C HEM 155 A 1 
HETATM 23 C C2C HEM . . . C 3 31.517 5.567 11.158 1 19.7 ? C2C HEM 155 A 1 
HETATM 24 C C3C HEM . . . C 3 31.733 4.719 12.232 1 20.27 ? C3C HEM 155 A 1 
HETATM 25 C C4C HEM . . . C 3 33.005 4.094 11.991 1 20 ? C4C HEM 155 A 1 
HETATM 26 C CMC HEM . . . C 3 30.314 6.507 10.882 1 18.79 ? CMC HEM 155 A 1 
HETATM 27 C CAC HEM . . . C 3 31.02 4.489 13.435 1 20.61 ? CAC HEM 155 A 1 
HETATM 28 C CBC HEM . . . C 3 29.846 5.09 13.927 1 21.34 ? CBC HEM 155 A 1 
HETATM 29 C C1D HEM . . . C 3 34.814 2.547 12.692 1 22.33 ? C1D HEM 155 A 1 
HETATM 30 C C2D HEM . . . C 3 35.367 1.649 13.692 1 23.23 ? C2D HEM 155 A 1 
HETATM 31 C C3D HEM . . . C 3 36.645 1.417 13.274 1 23.74 ? C3D HEM 155 A 1 
HETATM 32 C C4D HEM . . . C 3 36.845 2.127 12.012 1 22.99 ? C4D HEM 155 A 1 
HETATM 33 C CMD HEM . . . C 3 34.606 1.025 14.872 1 22.57 ? CMD HEM 155 A 1 
HETATM 34 C CAD HEM . . . C 3 37.812 0.807 14.007 1 26.06 ? CAD HEM 155 A 1 
HETATM 35 C CBD HEM . . . C 3 38.295 1.572 15.23 1 30.22 ? CBD HEM 155 A 1 
HETATM 36 C CGD HEM . . . C 3 39.573 0.976 15.809 1 32.57 ? CGD HEM 155 A 1 
HETATM 37 O O1D HEM . . . C 3 39.524 -0.12 16.42 1 35.05 ? O1D HEM 155 A 1 
HETATM 38 O O2D HEM . . . C 3 40.644 1.583 15.637 1 34.76 ? O2D HEM 155 A 1 
HETATM 39 N NA HEM . . . C 3 37.273 3.785 9.599 1 21.25 ? NA HEM 155 A 1 
HETATM 40 N NB HEM . . . C 3 35.164 5.329 8.656 1 19.34 ? NB HEM 155 A 1 
HETATM 41 N NC HEM . . . C 3 33.582 4.547 10.831 1 19.33 ? NC HEM 155 A 1 
HETATM 42 N ND HEM . . . C 3 35.73 2.806 11.655 1 21.88 ? ND HEM 155 A 1 
HETATM 43 FE FE HEM . . . C 3 35.485 4.162 10.26 1 21.38 ? FE HEM 155 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#