data_106M # _model_server_result.job_id v4OpNC4dI5PRRhMYgHw6Ww _model_server_result.datetime_utc '2025-01-28 11:41:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 106m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":155}' # _entry.id 106M # _exptl.entry_id 106M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 106M _cell.length_a 91.509 _cell.length_b 91.509 _cell.length_c 45.77 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 106M _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 C FE HEM . A HEM 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc2 C FE HEM . A HEM 155 1_555 D C ENC . A ENC 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 125 n n CHA C4D HEM doub 126 n n CHA HHA HEM sing 127 n n CHB C4A HEM sing 128 n n CHB C1B HEM doub 129 n n CHB HHB HEM sing 130 n n CHC C4B HEM sing 131 n n CHC C1C HEM doub 132 n n CHC HHC HEM sing 133 n n CHD C4C HEM doub 134 n n CHD C1D HEM sing 135 n n CHD HHD HEM sing 136 n n C1A C2A HEM doub 137 n y C1A NA HEM sing 138 n y C2A C3A HEM sing 139 n y C2A CAA HEM sing 140 n n C3A C4A HEM doub 141 n y C3A CMA HEM sing 142 n n C4A NA HEM sing 143 n y CMA HMA HEM sing 144 n n CMA HMAA HEM sing 145 n n CMA HMAB HEM sing 146 n n CAA CBA HEM sing 147 n n CAA HAA HEM sing 148 n n CAA HAAA HEM sing 149 n n CBA CGA HEM sing 150 n n CBA HBA HEM sing 151 n n CBA HBAA HEM sing 152 n n CGA O1A HEM doub 153 n n CGA O2A HEM sing 154 n n C1B C2B HEM sing 155 n n C1B NB HEM sing 156 n n C2B C3B HEM doub 157 n n C2B CMB HEM sing 158 n n C3B C4B HEM sing 159 n n C3B CAB HEM sing 160 n n C4B NB HEM doub 161 n n CMB HMB HEM sing 162 n n CMB HMBA HEM sing 163 n n CMB HMBB HEM sing 164 n n CAB CBB HEM doub 165 n n CAB HAB HEM sing 166 n n CBB HBB HEM sing 167 n n CBB HBBA HEM sing 168 n n C1C C2C HEM sing 169 n y C1C NC HEM sing 170 n y C2C C3C HEM doub 171 n y C2C CMC HEM sing 172 n n C3C C4C HEM sing 173 n y C3C CAC HEM sing 174 n n C4C NC HEM sing 175 n y CMC HMC HEM sing 176 n n CMC HMCA HEM sing 177 n n CMC HMCB HEM sing 178 n n CAC CBC HEM doub 179 n n CAC HAC HEM sing 180 n n CBC HBC HEM sing 181 n n CBC HBCA HEM sing 182 n n C1D C2D HEM sing 183 n n C1D ND HEM doub 184 n n C2D C3D HEM doub 185 n n C2D CMD HEM sing 186 n n C3D C4D HEM sing 187 n n C3D CAD HEM sing 188 n n C4D ND HEM sing 189 n n CMD HMD HEM sing 190 n n CMD HMDA HEM sing 191 n n CMD HMDB HEM sing 192 n n CAD CBD HEM sing 193 n n CAD HAD HEM sing 194 n n CAD HADA HEM sing 195 n n CBD CGD HEM sing 196 n n CBD HBD HEM sing 197 n n CBD HBDA HEM sing 198 n n CGD O1D HEM doub 199 n n CGD O2D HEM sing 200 n n O2A H2A HEM sing 201 n n O2D H2D HEM sing 202 n n FE NA HEM sing 203 n n FE NB HEM sing 204 n n FE NC HEM sing 205 n n FE ND HEM sing 206 n n # _atom_sites.entry_id 106M _atom_sites.fract_transf_matrix[1][1] 0.010928 _atom_sites.fract_transf_matrix[1][2] 0.006309 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012618 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021848 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 157 157 SO4 SO4 . C 3 HEM A 1 155 155 HEM HEM . D 4 ENC A 1 156 156 ENC ENC . E 5 HOH A 1 201 201 HOH HOH . E 5 HOH A 2 202 202 HOH HOH . E 5 HOH A 3 203 203 HOH HOH . E 5 HOH A 4 204 204 HOH HOH . E 5 HOH A 5 205 205 HOH HOH . E 5 HOH A 6 206 206 HOH HOH . E 5 HOH A 7 207 207 HOH HOH . E 5 HOH A 8 208 208 HOH HOH . E 5 HOH A 9 209 209 HOH HOH . E 5 HOH A 10 210 210 HOH HOH . E 5 HOH A 11 211 211 HOH HOH . E 5 HOH A 12 212 212 HOH HOH . E 5 HOH A 13 213 213 HOH HOH . E 5 HOH A 14 214 214 HOH HOH . E 5 HOH A 15 215 215 HOH HOH . E 5 HOH A 16 216 216 HOH HOH . E 5 HOH A 17 217 217 HOH HOH . E 5 HOH A 18 218 218 HOH HOH . E 5 HOH A 19 219 219 HOH HOH . E 5 HOH A 20 220 220 HOH HOH . E 5 HOH A 21 221 221 HOH HOH . E 5 HOH A 22 222 222 HOH HOH . E 5 HOH A 23 223 223 HOH HOH . E 5 HOH A 24 224 224 HOH HOH . E 5 HOH A 25 225 225 HOH HOH . E 5 HOH A 26 226 226 HOH HOH . E 5 HOH A 27 227 227 HOH HOH . E 5 HOH A 28 228 228 HOH HOH . E 5 HOH A 29 229 229 HOH HOH . E 5 HOH A 30 230 230 HOH HOH . E 5 HOH A 31 231 231 HOH HOH . E 5 HOH A 32 232 232 HOH HOH . E 5 HOH A 33 233 233 HOH HOH . E 5 HOH A 34 234 234 HOH HOH . E 5 HOH A 35 235 235 HOH HOH . E 5 HOH A 36 236 236 HOH HOH . E 5 HOH A 37 237 237 HOH HOH . E 5 HOH A 38 238 238 HOH HOH . E 5 HOH A 39 239 239 HOH HOH . E 5 HOH A 40 240 240 HOH HOH . E 5 HOH A 41 241 241 HOH HOH . E 5 HOH A 42 242 242 HOH HOH . E 5 HOH A 43 243 243 HOH HOH . E 5 HOH A 44 244 244 HOH HOH . E 5 HOH A 45 245 245 HOH HOH . E 5 HOH A 46 246 246 HOH HOH . E 5 HOH A 47 247 247 HOH HOH . E 5 HOH A 48 248 248 HOH HOH . E 5 HOH A 49 249 249 HOH HOH . E 5 HOH A 50 250 250 HOH HOH . E 5 HOH A 51 251 251 HOH HOH . E 5 HOH A 52 252 252 HOH HOH . E 5 HOH A 53 253 253 HOH HOH . E 5 HOH A 54 254 254 HOH HOH . E 5 HOH A 55 255 255 HOH HOH . E 5 HOH A 56 256 256 HOH HOH . E 5 HOH A 57 257 257 HOH HOH . E 5 HOH A 58 258 258 HOH HOH . E 5 HOH A 59 259 259 HOH HOH . E 5 HOH A 60 260 260 HOH HOH . E 5 HOH A 61 261 261 HOH HOH . E 5 HOH A 62 262 262 HOH HOH . E 5 HOH A 63 263 263 HOH HOH . E 5 HOH A 64 264 264 HOH HOH . E 5 HOH A 65 265 265 HOH HOH . E 5 HOH A 66 266 266 HOH HOH . E 5 HOH A 67 267 267 HOH HOH . E 5 HOH A 68 268 268 HOH HOH . E 5 HOH A 69 269 269 HOH HOH . E 5 HOH A 70 270 270 HOH HOH . E 5 HOH A 71 271 271 HOH HOH . E 5 HOH A 72 272 272 HOH HOH . E 5 HOH A 73 273 273 HOH HOH . E 5 HOH A 74 274 274 HOH HOH . E 5 HOH A 75 275 275 HOH HOH . E 5 HOH A 76 276 276 HOH HOH . E 5 HOH A 77 277 277 HOH HOH . E 5 HOH A 78 278 278 HOH HOH . E 5 HOH A 79 279 279 HOH HOH . E 5 HOH A 80 280 280 HOH HOH . E 5 HOH A 81 281 281 HOH HOH . E 5 HOH A 82 282 282 HOH HOH . E 5 HOH A 83 283 283 HOH HOH . E 5 HOH A 84 284 284 HOH HOH . E 5 HOH A 85 285 285 HOH HOH . E 5 HOH A 86 286 286 HOH HOH . E 5 HOH A 87 287 287 HOH HOH . E 5 HOH A 88 288 288 HOH HOH . E 5 HOH A 89 289 289 HOH HOH . E 5 HOH A 90 290 290 HOH HOH . E 5 HOH A 91 291 291 HOH HOH . E 5 HOH A 92 292 292 HOH HOH . E 5 HOH A 93 293 293 HOH HOH . E 5 HOH A 94 294 294 HOH HOH . E 5 HOH A 95 295 295 HOH HOH . E 5 HOH A 96 296 296 HOH HOH . E 5 HOH A 97 297 297 HOH HOH . E 5 HOH A 98 298 298 HOH HOH . E 5 HOH A 99 299 299 HOH HOH . E 5 HOH A 100 300 300 HOH HOH . E 5 HOH A 101 301 301 HOH HOH . E 5 HOH A 102 302 302 HOH HOH . E 5 HOH A 103 303 303 HOH HOH . E 5 HOH A 104 304 304 HOH HOH . E 5 HOH A 105 305 305 HOH HOH . E 5 HOH A 106 306 306 HOH HOH . E 5 HOH A 107 307 307 HOH HOH . E 5 HOH A 108 308 308 HOH HOH . E 5 HOH A 109 309 309 HOH HOH . E 5 HOH A 110 310 310 HOH HOH . E 5 HOH A 111 311 311 HOH HOH . E 5 HOH A 112 312 312 HOH HOH . E 5 HOH A 113 313 313 HOH HOH . E 5 HOH A 114 314 314 HOH HOH . E 5 HOH A 115 315 315 HOH HOH . E 5 HOH A 116 316 316 HOH HOH . E 5 HOH A 117 317 317 HOH HOH . E 5 HOH A 118 318 318 HOH HOH . E 5 HOH A 119 319 319 HOH HOH . E 5 HOH A 120 320 320 HOH HOH . E 5 HOH A 121 321 321 HOH HOH . E 5 HOH A 122 322 322 HOH HOH . E 5 HOH A 123 323 323 HOH HOH . E 5 HOH A 124 324 324 HOH HOH . E 5 HOH A 125 325 325 HOH HOH . E 5 HOH A 126 326 326 HOH HOH . E 5 HOH A 127 327 327 HOH HOH . E 5 HOH A 128 328 328 HOH HOH . E 5 HOH A 129 329 329 HOH HOH . E 5 HOH A 130 330 330 HOH HOH . E 5 HOH A 131 331 331 HOH HOH . E 5 HOH A 132 332 332 HOH HOH . E 5 HOH A 133 333 333 HOH HOH . E 5 HOH A 134 334 334 HOH HOH . E 5 HOH A 135 335 335 HOH HOH . E 5 HOH A 136 336 336 HOH HOH . E 5 HOH A 137 337 337 HOH HOH . E 5 HOH A 138 338 338 HOH HOH . E 5 HOH A 139 339 339 HOH HOH . E 5 HOH A 140 340 340 HOH HOH . E 5 HOH A 141 341 341 HOH HOH . E 5 HOH A 142 342 342 HOH HOH . E 5 HOH A 143 343 343 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 37.873 2.496 11.245 1 14.7 ? CHA HEM 155 A 1 HETATM 2 C CHB HEM . . . C 3 37.292 5.41 7.449 1 13.57 ? CHB HEM 155 A 1 HETATM 3 C CHC HEM . . . C 3 32.757 6.118 8.813 1 13.49 ? CHC HEM 155 A 1 HETATM 4 C CHD HEM . . . C 3 33.425 3.469 12.78 1 13.51 ? CHD HEM 155 A 1 HETATM 5 C C1A HEM . . . C 3 38.111 3.246 10.07 1 14.36 ? C1A HEM 155 A 1 HETATM 6 C C2A HEM . . . C 3 39.44 3.304 9.389 1 14.44 ? C2A HEM 155 A 1 HETATM 7 C C3A HEM . . . C 3 39.238 4.128 8.329 1 13.26 ? C3A HEM 155 A 1 HETATM 8 C C4A HEM . . . C 3 37.848 4.58 8.384 1 13.51 ? C4A HEM 155 A 1 HETATM 9 C CMA HEM . . . C 3 40.209 4.44 7.194 1 11.45 ? CMA HEM 155 A 1 HETATM 10 C CAA HEM . . . C 3 40.718 2.459 9.443 1 15.11 ? CAA HEM 155 A 1 HETATM 11 C CBA HEM . . . C 3 40.862 1.025 8.934 1 17.61 ? CBA HEM 155 A 1 HETATM 12 C CGA HEM . . . C 3 39.565 0.235 8.874 1 17.76 ? CGA HEM 155 A 1 HETATM 13 O O1A HEM . . . C 3 39.152 -0.321 9.908 1 18.48 ? O1A HEM 155 A 1 HETATM 14 O O2A HEM . . . C 3 38.985 0.126 7.778 1 18.95 ? O2A HEM 155 A 1 HETATM 15 C C1B HEM . . . C 3 35.957 5.842 7.451 1 14.36 ? C1B HEM 155 A 1 HETATM 16 C C2B HEM . . . C 3 35.364 6.731 6.425 1 13.99 ? C2B HEM 155 A 1 HETATM 17 C C3B HEM . . . C 3 34.078 6.905 6.82 1 14.48 ? C3B HEM 155 A 1 HETATM 18 C C4B HEM . . . C 3 33.903 6.133 8.069 1 13.66 ? C4B HEM 155 A 1 HETATM 19 C CMB HEM . . . C 3 36.063 7.304 5.177 1 13.29 ? CMB HEM 155 A 1 HETATM 20 C CAB HEM . . . C 3 33.073 7.774 6.321 1 15.65 ? CAB HEM 155 A 1 HETATM 21 C CBB HEM . . . C 3 33.169 8.786 5.315 1 17.5 ? CBB HEM 155 A 1 HETATM 22 C C1C HEM . . . C 3 32.526 5.468 10.019 1 13.7 ? C1C HEM 155 A 1 HETATM 23 C C2C HEM . . . C 3 31.34 5.645 10.835 1 13.99 ? C2C HEM 155 A 1 HETATM 24 C C3C HEM . . . C 3 31.512 4.912 11.996 1 15.06 ? C3C HEM 155 A 1 HETATM 25 C C4C HEM . . . C 3 32.83 4.294 11.824 1 13.81 ? C4C HEM 155 A 1 HETATM 26 C CMC HEM . . . C 3 30.157 6.524 10.443 1 14.39 ? CMC HEM 155 A 1 HETATM 27 C CAC HEM . . . C 3 30.78 4.784 13.201 1 15.02 ? CAC HEM 155 A 1 HETATM 28 C CBC HEM . . . C 3 29.591 5.475 13.557 1 17.65 ? CBC HEM 155 A 1 HETATM 29 C C1D HEM . . . C 3 34.714 2.917 12.721 1 14.51 ? C1D HEM 155 A 1 HETATM 30 C C2D HEM . . . C 3 35.306 2.015 13.697 1 15.7 ? C2D HEM 155 A 1 HETATM 31 C C3D HEM . . . C 3 36.575 1.763 13.251 1 15.84 ? C3D HEM 155 A 1 HETATM 32 C C4D HEM . . . C 3 36.729 2.459 12 1 14.87 ? C4D HEM 155 A 1 HETATM 33 C CMD HEM . . . C 3 34.59 1.325 14.867 1 16.09 ? CMD HEM 155 A 1 HETATM 34 C CAD HEM . . . C 3 37.745 1.13 13.952 1 17.4 ? CAD HEM 155 A 1 HETATM 35 C CBD HEM . . . C 3 38.308 1.837 15.182 1 22.17 ? CBD HEM 155 A 1 HETATM 36 C CGD HEM . . . C 3 39.497 1.084 15.776 1 23.34 ? CGD HEM 155 A 1 HETATM 37 O O1D HEM . . . C 3 39.338 0.419 16.817 1 27.65 ? O1D HEM 155 A 1 HETATM 38 O O2D HEM . . . C 3 40.587 1.122 15.19 1 25.74 ? O2D HEM 155 A 1 HETATM 39 N NA HEM . . . C 3 37.18 4.05 9.454 1 13.28 ? NA HEM 155 A 1 HETATM 40 N NB HEM . . . C 3 35.047 5.49 8.425 1 13.87 ? NB HEM 155 A 1 HETATM 41 N NC HEM . . . C 3 33.407 4.67 10.613 1 13.19 ? NC HEM 155 A 1 HETATM 42 N ND HEM . . . C 3 35.61 3.158 11.69 1 14.76 ? ND HEM 155 A 1 HETATM 43 FE FE HEM . . . C 3 35.37 4.372 9.991 1 14.72 ? FE HEM 155 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 43 #