data_107D
#
_model_server_result.job_id            UR7F_e1UxfWYzHBBTQ85aA 
_model_server_result.datetime_utc      '2024-10-18 16:22:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          107d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":15}' 
#
_entry.id    107D 
#
_exptl.entry_id    107D 
_exptl.method      'SOLUTION NMR' 
#
_entity.details                     'CHEMICALLY SYNTHESIZED' 
_entity.formula_weight              509.508 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-HYDROXY-2,8-DIMETHYL-1-OXO-6-(4,5,6-TRIMETHOXY-1H-INDOLE-2-CARBONYL)-1,2,3,6,7,8-HEXAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBOXYLIC ACID METHYL ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            107D 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 107D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 7 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 7 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 7 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N3 DC 2 A DC 2 1_555 B N1 DG 6 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N4 DC 2 A DC 2 1_555 B O6 DG 6 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A O2 DC 2 A DC 2 1_555 B N2 DG 6 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N3 DT 3 A DT 3 1_555 B N1 DA 5 B DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A O4 DT 3 A DT 3 1_555 B N6 DA 5 B DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N3 DT 4 A DT 4 1_555 B N1 DA 4 B DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A O4 DT 4 A DT 4 1_555 B N6 DA 4 B DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N3 DT 5 A DT 5 1_555 B N1 DA 3 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A O4 DT 5 A DT 5 1_555 B N6 DA 3 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N3 DT 6 A DT 6 1_555 B N1 DA 2 B DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A O4 DT 6 A DT 6 1_555 B N6 DA 2 B DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A N3 DC 7 A DC 7 1_555 B N1 DG 1 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N4 DC 7 A DC 7 1_555 B O6 DG 1 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A O2 DC 7 A DC 7 1_555 B N2 DG 1 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C26 H27 N3 O8' 
_chem_comp.formula_weight    509.508 
_chem_comp.id                DUO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-HYDROXY-2,8-DIMETHYL-1-OXO-6-(4,5,6-TRIMETHOXY-1H-INDOLE-2-CARBONYL)-1,2,3,6,7,8-HEXAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBOXYLIC ACID METHYL ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'DUOCARMYCIN A' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 DUO sing 150 n n 
N1 C5 DUO sing 151 n n 
N1 H1 DUO sing 152 n n 
C2 C3 DUO sing 153 n n 
C2 C33 DUO sing 154 n n 
C2 C34 DUO sing 155 n n 
C3 C4 DUO sing 156 n n 
C3 O32 DUO doub 157 n n 
C4 C5 DUO doub 158 n y 
C4 C9 DUO sing 159 n y 
C5 C6 DUO sing 160 n y 
C6 C7 DUO doub 161 n y 
C6 O31 DUO sing 162 n n 
C7 C8 DUO sing 163 n y 
C7 H7 DUO sing 164 n n 
C8 C9 DUO doub 165 n y 
C8 N13 DUO sing 166 n n 
C9 C11 DUO sing 167 n n 
C10 C11 DUO sing 168 n n 
C10 H101 DUO sing 169 n n 
C10 H102 DUO sing 170 n n 
C10 H103 DUO sing 171 n n 
C11 C12 DUO sing 172 n n 
C11 H11 DUO sing 173 n n 
C12 N13 DUO sing 174 n n 
C12 H121 DUO sing 175 n n 
C12 H122 DUO sing 176 n n 
N13 C14 DUO sing 177 n n 
C14 C15 DUO sing 178 n n 
C14 O30 DUO doub 179 n n 
C15 C16 DUO doub 180 n y 
C15 N23 DUO sing 181 n y 
C16 C17 DUO sing 182 n y 
C16 H16 DUO sing 183 n n 
C17 C18 DUO doub 184 n y 
C17 C22 DUO sing 185 n y 
C18 C19 DUO sing 186 n y 
C18 H18 DUO sing 187 n n 
C19 C20 DUO doub 188 n y 
C19 O24 DUO sing 189 n n 
C20 C21 DUO sing 190 n y 
C20 O26 DUO sing 191 n n 
C21 C22 DUO doub 192 n y 
C21 O28 DUO sing 193 n n 
C22 N23 DUO sing 194 n y 
N23 H23 DUO sing 195 n n 
O24 C25 DUO sing 196 n n 
C25 H251 DUO sing 197 n n 
C25 H252 DUO sing 198 n n 
C25 H253 DUO sing 199 n n 
O26 C27 DUO sing 200 n n 
C27 H271 DUO sing 201 n n 
C27 H272 DUO sing 202 n n 
C27 H273 DUO sing 203 n n 
O28 C29 DUO sing 204 n n 
C29 H291 DUO sing 205 n n 
C29 H292 DUO sing 206 n n 
C29 H293 DUO sing 207 n n 
O31 H31 DUO sing 208 n n 
C33 H331 DUO sing 209 n n 
C33 H332 DUO sing 210 n n 
C33 H333 DUO sing 211 n n 
C34 O35 DUO doub 212 n n 
C34 O36 DUO sing 213 n n 
O36 C37 DUO sing 214 n n 
C37 H371 DUO sing 215 n n 
C37 H372 DUO sing 216 n n 
C37 H373 DUO sing 217 n n 
#
_atom_sites.entry_id                     107D 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           DUO 
_pdbx_nonpoly_scheme.pdb_strand_id    B 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      15 
_pdbx_nonpoly_scheme.auth_seq_num     15 
_pdbx_nonpoly_scheme.pdb_mon_id       DUO 
_pdbx_nonpoly_scheme.auth_mon_id      DUO 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 DUO . . . C 3 2.577 7.193 -6.269 1 0.45 ? N1 DUO 15 B 1 
HETATM 2 C C2 DUO . . . C 3 3.313 5.997 -6.676 1 0.33 ? C2 DUO 15 B 1 
HETATM 3 C C3 DUO . . . C 3 2.561 4.834 -6.15 1 0.41 ? C3 DUO 15 B 1 
HETATM 4 C C4 DUO . . . C 3 1.401 5.344 -5.381 1 0.3 ? C4 DUO 15 B 1 
HETATM 5 C C5 DUO . . . C 3 1.446 6.73 -5.489 1 0.33 ? C5 DUO 15 B 1 
HETATM 6 C C6 DUO . . . C 3 0.469 7.528 -4.879 1 0.28 ? C6 DUO 15 B 1 
HETATM 7 C C7 DUO . . . C 3 -0.568 6.936 -4.164 1 0.23 ? C7 DUO 15 B 1 
HETATM 8 C C8 DUO . . . C 3 -0.633 5.549 -4.055 1 0.2 ? C8 DUO 15 B 1 
HETATM 9 C C9 DUO . . . C 3 0.368 4.782 -4.641 1 0.22 ? C9 DUO 15 B 1 
HETATM 10 C C10 DUO . . . C 3 -0.585 2.626 -5.494 1 0.2 ? C10 DUO 15 B 1 
HETATM 11 C C11 DUO . . . C 3 0.143 3.32 -4.353 1 0.21 ? C11 DUO 15 B 1 
HETATM 12 C C12 DUO . . . C 3 -0.81 3.459 -3.224 1 0.22 ? C12 DUO 15 B 1 
HETATM 13 N N13 DUO . . . C 3 -1.592 4.667 -3.41 1 0.23 ? N13 DUO 15 B 1 
HETATM 14 C C14 DUO . . . C 3 -2.793 5.054 -2.672 1 0.29 ? C14 DUO 15 B 1 
HETATM 15 C C15 DUO . . . C 3 -3.468 4.291 -1.561 1 0.23 ? C15 DUO 15 B 1 
HETATM 16 C C16 DUO . . . C 3 -3.027 3.167 -0.882 1 0.21 ? C16 DUO 15 B 1 
HETATM 17 C C17 DUO . . . C 3 -3.982 2.775 0.038 1 0.19 ? C17 DUO 15 B 1 
HETATM 18 C C18 DUO . . . C 3 -4.163 1.731 0.943 1 0.18 ? C18 DUO 15 B 1 
HETATM 19 C C19 DUO . . . C 3 -5.305 1.598 1.735 1 0.19 ? C19 DUO 15 B 1 
HETATM 20 C C20 DUO . . . C 3 -6.291 2.595 1.637 1 0.19 ? C20 DUO 15 B 1 
HETATM 21 C C21 DUO . . . C 3 -6.167 3.641 0.705 1 0.18 ? C21 DUO 15 B 1 
HETATM 22 C C22 DUO . . . C 3 -5.009 3.702 -0.085 1 0.18 ? C22 DUO 15 B 1 
HETATM 23 N N23 DUO . . . C 3 -4.664 4.573 -1.033 1 0.23 ? N23 DUO 15 B 1 
HETATM 24 O O24 DUO . . . C 3 -5.453 0.518 2.601 1 0.27 ? O24 DUO 15 B 1 
HETATM 25 C C25 DUO . . . C 3 -4.866 -0.772 2.317 1 0.2 ? C25 DUO 15 B 1 
HETATM 26 O O26 DUO . . . C 3 -7.402 2.553 2.47 1 0.23 ? O26 DUO 15 B 1 
HETATM 27 C C27 DUO . . . C 3 -8.471 1.666 2.115 1 0.31 ? C27 DUO 15 B 1 
HETATM 28 O O28 DUO . . . C 3 -7.156 4.604 0.567 1 0.24 ? O28 DUO 15 B 1 
HETATM 29 C C29 DUO . . . C 3 -8.058 4.383 -0.525 1 0.38 ? C29 DUO 15 B 1 
HETATM 30 O O30 DUO . . . C 3 -3.272 6.126 -3.048 1 0.41 ? O30 DUO 15 B 1 
HETATM 31 O O31 DUO . . . C 3 0.449 8.903 -4.928 1 0.35 ? O31 DUO 15 B 1 
HETATM 32 O O32 DUO . . . C 3 2.819 3.64 -6.331 1 0.57 ? O32 DUO 15 B 1 
HETATM 33 C C33 DUO . . . C 3 3.19 6.017 -8.203 1 0.47 ? C33 DUO 15 B 1 
HETATM 34 C C34 DUO . . . C 3 4.723 5.8 -6.206 1 0.33 ? C34 DUO 15 B 1 
HETATM 35 O O35 DUO . . . C 3 4.993 5.927 -5.013 1 0.47 ? O35 DUO 15 B 1 
HETATM 36 O O36 DUO . . . C 3 5.748 5.487 -7.087 1 0.49 ? O36 DUO 15 B 1 
HETATM 37 C C37 DUO . . . C 3 6.101 4.098 -7.115 1 0.51 ? C37 DUO 15 B 1 
HETATM 38 H H1 DUO . . . C 3 3.13 7.881 -5.843 1 0.68 ? H1 DUO 15 B 1 
HETATM 39 H H7 DUO . . . C 3 -1.341 7.55 -3.725 1 0.25 ? H7 DUO 15 B 1 
HETATM 40 H H101 DUO . . . C 3 -1.546 3.157 -5.429 1 0.23 ? H101 DUO 15 B 1 
HETATM 41 H H102 DUO . . . C 3 0.036 2.804 -6.385 1 0.22 ? H102 DUO 15 B 1 
HETATM 42 H H11 DUO . . . C 3 1.007 2.801 -3.91 1 0.27 ? H11 DUO 15 B 1 
HETATM 43 H H121 DUO . . . C 3 -0.129 3.624 -2.376 1 0.2 ? H121 DUO 15 B 1 
HETATM 44 H H122 DUO . . . C 3 -1.338 2.498 -3.134 1 0.22 ? H122 DUO 15 B 1 
HETATM 45 H H16 DUO . . . C 3 -2.066 2.713 -1.074 1 0.23 ? H16 DUO 15 B 1 
HETATM 46 H H18 DUO . . . C 3 -3.421 0.959 1.08 1 0.19 ? H18 DUO 15 B 1 
HETATM 47 H H23 DUO . . . C 3 -5.213 5.315 -1.312 1 0.29 ? H23 DUO 15 B 1 
HETATM 48 H H251 DUO . . . C 3 -4.901 -1.405 3.216 1 0.44 ? H251 DUO 15 B 1 
HETATM 49 H H252 DUO . . . C 3 -3.799 -0.657 2.076 1 0.48 ? H252 DUO 15 B 1 
HETATM 50 H H253 DUO . . . C 3 -5.33 -1.319 1.483 1 0.44 ? H253 DUO 15 B 1 
HETATM 51 H H271 DUO . . . C 3 -9.209 1.646 2.93 1 0.42 ? H271 DUO 15 B 1 
HETATM 52 H H272 DUO . . . C 3 -8.093 0.646 1.945 1 0.43 ? H272 DUO 15 B 1 
HETATM 53 H H273 DUO . . . C 3 -8.944 2.04 1.195 1 0.53 ? H273 DUO 15 B 1 
HETATM 54 H H291 DUO . . . C 3 -7.518 4.547 -1.47 1 0.65 ? H291 DUO 15 B 1 
HETATM 55 H H292 DUO . . . C 3 -8.909 5.078 -0.464 1 0.44 ? H292 DUO 15 B 1 
HETATM 56 H H293 DUO . . . C 3 -8.428 3.348 -0.482 1 0.55 ? H293 DUO 15 B 1 
HETATM 57 H H31 DUO . . . C 3 0.657 9.17 -5.823 1 0.7 ? H31 DUO 15 B 1 
HETATM 58 H H331 DUO . . . C 3 3.937 5.343 -8.647 1 0.49 ? H331 DUO 15 B 1 
HETATM 59 H H332 DUO . . . C 3 3.357 7.045 -8.557 1 0.67 ? H332 DUO 15 B 1 
HETATM 60 H H333 DUO . . . C 3 2.18 5.686 -8.488 1 0.74 ? H333 DUO 15 B 1 
HETATM 61 H H371 DUO . . . C 3 6.576 3.839 -8.073 1 1.16 ? H371 DUO 15 B 1 
HETATM 62 H H372 DUO . . . C 3 6.796 3.865 -6.295 1 1.11 ? H372 DUO 15 B 1 
HETATM 63 H H373 DUO . . . C 3 5.195 3.483 -7.013 1 0.84 ? H373 DUO 15 B 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           1191 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           63 
#