data_108M # _model_server_result.job_id o2AZeV_yP1Pz2MLgeCuKJQ _model_server_result.datetime_utc '2025-02-12 03:34:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 108m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":155}' # _entry.id 108M # _exptl.entry_id 108M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 108M _cell.length_a 91.622 _cell.length_b 91.622 _cell.length_c 45.984 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 108M _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 94 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 155 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.233 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 108M _atom_sites.fract_transf_matrix[1][1] 0.010914 _atom_sites.fract_transf_matrix[1][2] 0.006301 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021747 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 157 157 SO4 SO4 . C 3 HEM A 1 155 155 HEM HEM . D 4 NBN A 1 156 156 NBN NBN . E 5 HOH A 1 201 201 HOH HOH . E 5 HOH A 2 202 202 HOH HOH . E 5 HOH A 3 203 203 HOH HOH . E 5 HOH A 4 204 204 HOH HOH . E 5 HOH A 5 205 205 HOH HOH . E 5 HOH A 6 206 206 HOH HOH . E 5 HOH A 7 207 207 HOH HOH . E 5 HOH A 8 208 208 HOH HOH . E 5 HOH A 9 209 209 HOH HOH . E 5 HOH A 10 210 210 HOH HOH . E 5 HOH A 11 211 211 HOH HOH . E 5 HOH A 12 212 212 HOH HOH . E 5 HOH A 13 213 213 HOH HOH . E 5 HOH A 14 214 214 HOH HOH . E 5 HOH A 15 215 215 HOH HOH . E 5 HOH A 16 216 216 HOH HOH . E 5 HOH A 17 217 217 HOH HOH . E 5 HOH A 18 218 218 HOH HOH . E 5 HOH A 19 219 219 HOH HOH . E 5 HOH A 20 220 220 HOH HOH . E 5 HOH A 21 221 221 HOH HOH . E 5 HOH A 22 222 222 HOH HOH . E 5 HOH A 23 223 223 HOH HOH . E 5 HOH A 24 224 224 HOH HOH . E 5 HOH A 25 225 225 HOH HOH . E 5 HOH A 26 226 226 HOH HOH . E 5 HOH A 27 227 227 HOH HOH . E 5 HOH A 28 228 228 HOH HOH . E 5 HOH A 29 229 229 HOH HOH . E 5 HOH A 30 230 230 HOH HOH . E 5 HOH A 31 231 231 HOH HOH . E 5 HOH A 32 232 232 HOH HOH . E 5 HOH A 33 233 233 HOH HOH . E 5 HOH A 34 234 234 HOH HOH . E 5 HOH A 35 235 235 HOH HOH . E 5 HOH A 36 236 236 HOH HOH . E 5 HOH A 37 237 237 HOH HOH . E 5 HOH A 38 238 238 HOH HOH . E 5 HOH A 39 239 239 HOH HOH . E 5 HOH A 40 240 240 HOH HOH . E 5 HOH A 41 241 241 HOH HOH . E 5 HOH A 42 242 242 HOH HOH . E 5 HOH A 43 243 243 HOH HOH . E 5 HOH A 44 244 244 HOH HOH . E 5 HOH A 45 245 245 HOH HOH . E 5 HOH A 46 246 246 HOH HOH . E 5 HOH A 47 247 247 HOH HOH . E 5 HOH A 48 248 248 HOH HOH . E 5 HOH A 49 249 249 HOH HOH . E 5 HOH A 50 250 250 HOH HOH . E 5 HOH A 51 251 251 HOH HOH . E 5 HOH A 52 252 252 HOH HOH . E 5 HOH A 53 253 253 HOH HOH . E 5 HOH A 54 254 254 HOH HOH . E 5 HOH A 55 255 255 HOH HOH . E 5 HOH A 56 256 256 HOH HOH . E 5 HOH A 57 257 257 HOH HOH . E 5 HOH A 58 258 258 HOH HOH . E 5 HOH A 59 259 259 HOH HOH . E 5 HOH A 60 260 260 HOH HOH . E 5 HOH A 61 261 261 HOH HOH . E 5 HOH A 62 262 262 HOH HOH . E 5 HOH A 63 263 263 HOH HOH . E 5 HOH A 64 264 264 HOH HOH . E 5 HOH A 65 265 265 HOH HOH . E 5 HOH A 66 266 266 HOH HOH . E 5 HOH A 67 267 267 HOH HOH . E 5 HOH A 68 268 268 HOH HOH . E 5 HOH A 69 269 269 HOH HOH . E 5 HOH A 70 270 270 HOH HOH . E 5 HOH A 71 271 271 HOH HOH . E 5 HOH A 72 272 272 HOH HOH . E 5 HOH A 73 273 273 HOH HOH . E 5 HOH A 74 274 274 HOH HOH . E 5 HOH A 75 275 275 HOH HOH . E 5 HOH A 76 276 276 HOH HOH . E 5 HOH A 77 277 277 HOH HOH . E 5 HOH A 78 278 278 HOH HOH . E 5 HOH A 79 279 279 HOH HOH . E 5 HOH A 80 280 280 HOH HOH . E 5 HOH A 81 281 281 HOH HOH . E 5 HOH A 82 282 282 HOH HOH . E 5 HOH A 83 283 283 HOH HOH . E 5 HOH A 84 284 284 HOH HOH . E 5 HOH A 85 285 285 HOH HOH . E 5 HOH A 86 286 286 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 37.982 2.619 11.187 1 24.96 ? CHA HEM 155 A 1 HETATM 2 C CHB HEM . . . C 3 37.354 5.471 7.342 1 23.33 ? CHB HEM 155 A 1 HETATM 3 C CHC HEM . . . C 3 32.938 6.14 8.861 1 22.8 ? CHC HEM 155 A 1 HETATM 4 C CHD HEM . . . C 3 33.589 3.335 12.734 1 24.51 ? CHD HEM 155 A 1 HETATM 5 C C1A HEM . . . C 3 38.199 3.301 10.053 1 24.34 ? C1A HEM 155 A 1 HETATM 6 C C2A HEM . . . C 3 39.439 3.248 9.289 1 24.61 ? C2A HEM 155 A 1 HETATM 7 C C3A HEM . . . C 3 39.204 4.053 8.253 1 24.07 ? C3A HEM 155 A 1 HETATM 8 C C4A HEM . . . C 3 37.883 4.6 8.331 1 23.95 ? C4A HEM 155 A 1 HETATM 9 C CMA HEM . . . C 3 40.174 4.291 7.149 1 23.93 ? CMA HEM 155 A 1 HETATM 10 C CAA HEM . . . C 3 40.742 2.413 9.358 1 25.74 ? CAA HEM 155 A 1 HETATM 11 C CBA HEM . . . C 3 40.789 0.895 9.227 1 27.35 ? CBA HEM 155 A 1 HETATM 12 C CGA HEM . . . C 3 39.481 0.316 8.689 1 29.42 ? CGA HEM 155 A 1 HETATM 13 O O1A HEM . . . C 3 38.646 -0.196 9.484 1 29.94 ? O1A HEM 155 A 1 HETATM 14 O O2A HEM . . . C 3 39.278 0.387 7.456 1 30.98 ? O2A HEM 155 A 1 HETATM 15 C C1B HEM . . . C 3 36.055 5.946 7.351 1 23.11 ? C1B HEM 155 A 1 HETATM 16 C C2B HEM . . . C 3 35.455 6.875 6.401 1 22.67 ? C2B HEM 155 A 1 HETATM 17 C C3B HEM . . . C 3 34.183 7.065 6.865 1 22.53 ? C3B HEM 155 A 1 HETATM 18 C C4B HEM . . . C 3 34.028 6.229 8.061 1 22.23 ? C4B HEM 155 A 1 HETATM 19 C CMB HEM . . . C 3 36.123 7.454 5.166 1 22.12 ? CMB HEM 155 A 1 HETATM 20 C CAB HEM . . . C 3 33.199 7.959 6.44 1 22.4 ? CAB HEM 155 A 1 HETATM 21 C CBB HEM . . . C 3 33.222 8.94 5.423 1 22.28 ? CBB HEM 155 A 1 HETATM 22 C C1C HEM . . . C 3 32.766 5.426 10.04 1 23.39 ? C1C HEM 155 A 1 HETATM 23 C C2C HEM . . . C 3 31.541 5.56 10.943 1 23.69 ? C2C HEM 155 A 1 HETATM 24 C C3C HEM . . . C 3 31.742 4.785 12.042 1 23.7 ? C3C HEM 155 A 1 HETATM 25 C C4C HEM . . . C 3 33.061 4.191 11.783 1 23.82 ? C4C HEM 155 A 1 HETATM 26 C CMC HEM . . . C 3 30.333 6.451 10.747 1 23.23 ? CMC HEM 155 A 1 HETATM 27 C CAC HEM . . . C 3 31.071 4.606 13.299 1 23.47 ? CAC HEM 155 A 1 HETATM 28 C CBC HEM . . . C 3 29.944 5.164 13.961 1 22.1 ? CBC HEM 155 A 1 HETATM 29 C C1D HEM . . . C 3 34.827 2.836 12.671 1 25.66 ? C1D HEM 155 A 1 HETATM 30 C C2D HEM . . . C 3 35.388 1.986 13.684 1 26.34 ? C2D HEM 155 A 1 HETATM 31 C C3D HEM . . . C 3 36.669 1.839 13.239 1 26.89 ? C3D HEM 155 A 1 HETATM 32 C C4D HEM . . . C 3 36.835 2.55 11.961 1 25.82 ? C4D HEM 155 A 1 HETATM 33 C CMD HEM . . . C 3 34.647 1.323 14.87 1 25.57 ? CMD HEM 155 A 1 HETATM 34 C CAD HEM . . . C 3 37.856 1.245 13.947 1 28.83 ? CAD HEM 155 A 1 HETATM 35 C CBD HEM . . . C 3 38.302 1.933 15.213 1 32.21 ? CBD HEM 155 A 1 HETATM 36 C CGD HEM . . . C 3 39.727 1.557 15.584 1 33.8 ? CGD HEM 155 A 1 HETATM 37 O O1D HEM . . . C 3 39.974 0.399 16.015 1 35.29 ? O1D HEM 155 A 1 HETATM 38 O O2D HEM . . . C 3 40.611 2.423 15.424 1 35.91 ? O2D HEM 155 A 1 HETATM 39 N NA HEM . . . C 3 37.253 4.104 9.479 1 24.03 ? NA HEM 155 A 1 HETATM 40 N NB HEM . . . C 3 35.139 5.575 8.341 1 23.26 ? NB HEM 155 A 1 HETATM 41 N NC HEM . . . C 3 33.678 4.602 10.59 1 23.31 ? NC HEM 155 A 1 HETATM 42 N ND HEM . . . C 3 35.698 3.164 11.637 1 25.46 ? ND HEM 155 A 1 HETATM 43 FE FE HEM . . . C 3 35.519 4.378 10.031 1 23.42 ? FE HEM 155 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 43 #