data_108M # _model_server_result.job_id 0r-RjzHiHneq9OmiOiaydw _model_server_result.datetime_utc '2025-02-12 03:34:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 108m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":156}' # _entry.id 108M # _exptl.entry_id 108M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 83.132 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-BUTYL ISOCYANIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 108M _cell.length_a 91.622 _cell.length_b 91.622 _cell.length_c 45.984 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 108M _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 94 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 155 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.233 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C5 H9 N' _chem_comp.formula_weight 83.132 _chem_comp.id NBN _chem_comp.mon_nstd_flag . _chem_comp.name 'N-BUTYL ISOCYANIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C N NBN trip 306 n n N C1 NBN sing 307 n n C1 C2 NBN sing 308 n n C1 H11 NBN sing 309 n n C1 H12 NBN sing 310 n n C2 C3 NBN sing 311 n n C2 H21 NBN sing 312 n n C2 H22 NBN sing 313 n n C3 C4 NBN sing 314 n n C3 H31 NBN sing 315 n n C3 H32 NBN sing 316 n n C4 H41 NBN sing 317 n n C4 H42 NBN sing 318 n n C4 H43 NBN sing 319 n n # _atom_sites.entry_id 108M _atom_sites.fract_transf_matrix[1][1] 0.010914 _atom_sites.fract_transf_matrix[1][2] 0.006301 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021747 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 157 157 SO4 SO4 . C 3 HEM A 1 155 155 HEM HEM . D 4 NBN A 1 156 156 NBN NBN . E 5 HOH A 1 201 201 HOH HOH . E 5 HOH A 2 202 202 HOH HOH . E 5 HOH A 3 203 203 HOH HOH . E 5 HOH A 4 204 204 HOH HOH . E 5 HOH A 5 205 205 HOH HOH . E 5 HOH A 6 206 206 HOH HOH . E 5 HOH A 7 207 207 HOH HOH . E 5 HOH A 8 208 208 HOH HOH . E 5 HOH A 9 209 209 HOH HOH . E 5 HOH A 10 210 210 HOH HOH . E 5 HOH A 11 211 211 HOH HOH . E 5 HOH A 12 212 212 HOH HOH . E 5 HOH A 13 213 213 HOH HOH . E 5 HOH A 14 214 214 HOH HOH . E 5 HOH A 15 215 215 HOH HOH . E 5 HOH A 16 216 216 HOH HOH . E 5 HOH A 17 217 217 HOH HOH . E 5 HOH A 18 218 218 HOH HOH . E 5 HOH A 19 219 219 HOH HOH . E 5 HOH A 20 220 220 HOH HOH . E 5 HOH A 21 221 221 HOH HOH . E 5 HOH A 22 222 222 HOH HOH . E 5 HOH A 23 223 223 HOH HOH . E 5 HOH A 24 224 224 HOH HOH . E 5 HOH A 25 225 225 HOH HOH . E 5 HOH A 26 226 226 HOH HOH . E 5 HOH A 27 227 227 HOH HOH . E 5 HOH A 28 228 228 HOH HOH . E 5 HOH A 29 229 229 HOH HOH . E 5 HOH A 30 230 230 HOH HOH . E 5 HOH A 31 231 231 HOH HOH . E 5 HOH A 32 232 232 HOH HOH . E 5 HOH A 33 233 233 HOH HOH . E 5 HOH A 34 234 234 HOH HOH . E 5 HOH A 35 235 235 HOH HOH . E 5 HOH A 36 236 236 HOH HOH . E 5 HOH A 37 237 237 HOH HOH . E 5 HOH A 38 238 238 HOH HOH . E 5 HOH A 39 239 239 HOH HOH . E 5 HOH A 40 240 240 HOH HOH . E 5 HOH A 41 241 241 HOH HOH . E 5 HOH A 42 242 242 HOH HOH . E 5 HOH A 43 243 243 HOH HOH . E 5 HOH A 44 244 244 HOH HOH . E 5 HOH A 45 245 245 HOH HOH . E 5 HOH A 46 246 246 HOH HOH . E 5 HOH A 47 247 247 HOH HOH . E 5 HOH A 48 248 248 HOH HOH . E 5 HOH A 49 249 249 HOH HOH . E 5 HOH A 50 250 250 HOH HOH . E 5 HOH A 51 251 251 HOH HOH . E 5 HOH A 52 252 252 HOH HOH . E 5 HOH A 53 253 253 HOH HOH . E 5 HOH A 54 254 254 HOH HOH . E 5 HOH A 55 255 255 HOH HOH . E 5 HOH A 56 256 256 HOH HOH . E 5 HOH A 57 257 257 HOH HOH . E 5 HOH A 58 258 258 HOH HOH . E 5 HOH A 59 259 259 HOH HOH . E 5 HOH A 60 260 260 HOH HOH . E 5 HOH A 61 261 261 HOH HOH . E 5 HOH A 62 262 262 HOH HOH . E 5 HOH A 63 263 263 HOH HOH . E 5 HOH A 64 264 264 HOH HOH . E 5 HOH A 65 265 265 HOH HOH . E 5 HOH A 66 266 266 HOH HOH . E 5 HOH A 67 267 267 HOH HOH . E 5 HOH A 68 268 268 HOH HOH . E 5 HOH A 69 269 269 HOH HOH . E 5 HOH A 70 270 270 HOH HOH . E 5 HOH A 71 271 271 HOH HOH . E 5 HOH A 72 272 272 HOH HOH . E 5 HOH A 73 273 273 HOH HOH . E 5 HOH A 74 274 274 HOH HOH . E 5 HOH A 75 275 275 HOH HOH . E 5 HOH A 76 276 276 HOH HOH . E 5 HOH A 77 277 277 HOH HOH . E 5 HOH A 78 278 278 HOH HOH . E 5 HOH A 79 279 279 HOH HOH . E 5 HOH A 80 280 280 HOH HOH . E 5 HOH A 81 281 281 HOH HOH . E 5 HOH A 82 282 282 HOH HOH . E 5 HOH A 83 283 283 HOH HOH . E 5 HOH A 84 284 284 HOH HOH . E 5 HOH A 85 285 285 HOH HOH . E 5 HOH A 86 286 286 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C NBN . . . D 4 36.001 6.221 10.978 1 24.98 ? C NBN 156 A 1 HETATM 2 N N NBN . . . D 4 36.36 6.781 11.839 1 25.81 ? N NBN 156 A 1 HETATM 3 C C1 NBN . A . D 4 37.644 6.935 12.644 0.53 25.58 ? C1 NBN 156 A 1 HETATM 4 C C1 NBN . B . D 4 35.776 7.666 12.967 0.45 26.07 ? C1 NBN 156 A 1 HETATM 5 C C2 NBN . A . D 4 38.744 6.298 11.845 0.53 25.75 ? C2 NBN 156 A 1 HETATM 6 C C2 NBN . B . D 4 34.268 7.655 12.826 0.45 26.37 ? C2 NBN 156 A 1 HETATM 7 C C3 NBN . A . D 4 39.722 5.648 12.705 0.53 26.11 ? C3 NBN 156 A 1 HETATM 8 C C3 NBN . B . D 4 33.604 8.209 14.019 0.45 26.77 ? C3 NBN 156 A 1 HETATM 9 C C4 NBN . A . D 4 38.97 4.733 13.648 0.53 27.17 ? C4 NBN 156 A 1 HETATM 10 C C4 NBN . B . D 4 32.828 9.349 13.478 0.45 27.26 ? C4 NBN 156 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #