data_109D
#
_model_server_result.job_id            gwLKCQZTyy_hhz4_bENTAQ 
_model_server_result.datetime_utc      '2024-10-18 14:30:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          109d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":26}' 
#
_entry.id    109D 
#
_exptl.entry_id    109D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            109D 
_cell.length_a            24.59 
_cell.length_b            40.44 
_cell.length_c            65.76 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 109D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D MG MG . A MG 26 1_555 E O HOH . A HOH 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc2 D MG MG . A MG 26 1_555 E O HOH . A HOH 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc3 D MG MG . A MG 26 1_555 E O HOH . A HOH 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc4 D MG MG . A MG 26 1_555 E O HOH . A HOH 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc5 D MG MG . A MG 26 1_555 E O HOH . A HOH 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc6 D MG MG . A MG 26 1_555 E O HOH . A HOH 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N1 DA 5 A DA 5 1_555 B N3 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N6 DA 5 A DA 5 1_555 B O4 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DA-DA MISPAIR' hydrog15 A N6 DA 6 A DA 6 1_555 B N1 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N1 DA 6 A DA 6 1_555 B N3 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A N6 DA 6 A DA 6 1_555 B O4 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A N3 DT 7 A DT 7 1_555 B N1 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A O4 DT 7 A DT 7 1_555 B N6 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 A N3 DT 8 A DT 8 1_555 B N1 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 A O4 DT 8 A DT 8 1_555 B N6 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 A N3 DC 9 A DC 9 1_555 B N1 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 A N4 DC 9 A DC 9 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 A O2 DC 9 A DC 9 1_555 B N2 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 A N1 DG 10 A DG 10 1_555 B N3 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 A N2 DG 10 A DG 10 1_555 B O2 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 A O6 DG 10 A DG 10 1_555 B N4 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog28 A N3 DC 11 A DC 11 1_555 B N1 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog29 A N4 DC 11 A DC 11 1_555 B O6 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog30 A O2 DC 11 A DC 11 1_555 B N2 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog31 A N1 DG 12 A DG 12 1_555 B N3 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog32 A N2 DG 12 A DG 12 1_555 B O2 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog33 A O6 DG 12 A DG 12 1_555 B N4 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     109D 
_atom_sites.fract_transf_matrix[1][1]    0.040667 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024728 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015207 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 IBB A 1 25 25 IBB IBB . 
D 3 MG A 1 26 26 MG MO6 . 
E 4 HOH A 1 29 29 HOH HOH . 
E 4 HOH A 2 30 30 HOH HOH . 
E 4 HOH A 3 31 31 HOH HOH . 
E 4 HOH A 4 33 33 HOH HOH . 
E 4 HOH A 5 34 34 HOH HOH . 
E 4 HOH A 6 37 37 HOH HOH . 
E 4 HOH A 7 38 38 HOH HOH . 
E 4 HOH A 8 40 40 HOH HOH . 
E 4 HOH A 9 41 41 HOH HOH . 
E 4 HOH A 10 42 42 HOH HOH . 
E 4 HOH A 11 43 43 HOH HOH . 
E 4 HOH A 12 44 44 HOH HOH . 
E 4 HOH A 13 45 45 HOH HOH . 
E 4 HOH A 14 47 47 HOH HOH . 
E 4 HOH A 15 49 49 HOH HOH . 
E 4 HOH A 16 50 50 HOH HOH . 
E 4 HOH A 17 52 52 HOH HOH . 
E 4 HOH A 18 54 54 HOH HOH . 
E 4 HOH A 19 55 55 HOH HOH . 
E 4 HOH A 20 58 58 HOH HOH . 
E 4 HOH A 21 60 60 HOH HOH . 
E 4 HOH A 22 62 62 HOH HOH . 
E 4 HOH A 23 63 63 HOH HOH . 
E 4 HOH A 24 65 65 HOH HOH . 
E 4 HOH A 25 66 66 HOH HOH . 
E 4 HOH A 26 67 67 HOH HOH . 
E 4 HOH A 27 69 69 HOH HOH . 
E 4 HOH A 28 70 70 HOH HOH . 
E 4 HOH A 29 72 72 HOH HOH . 
E 4 HOH A 30 75 75 HOH HOH . 
E 4 HOH A 31 76 76 HOH HOH . 
E 4 HOH A 32 78 78 HOH HOH . 
E 4 HOH A 33 79 79 HOH HOH . 
E 4 HOH A 34 80 80 HOH HOH . 
E 4 HOH A 35 83 83 HOH HOH . 
E 4 HOH A 36 86 86 HOH HOH . 
E 4 HOH A 37 87 87 HOH HOH . 
E 4 HOH A 38 88 88 HOH HOH . 
E 4 HOH A 39 89 89 HOH HOH . 
E 4 HOH A 40 90 90 HOH HOH . 
E 4 HOH A 41 91 91 HOH HOH . 
E 4 HOH A 42 92 92 HOH HOH . 
E 4 HOH A 43 93 93 HOH HOH . 
E 4 HOH A 44 94 94 HOH HOH . 
E 4 HOH A 45 95 95 HOH HOH . 
E 4 HOH A 46 100 100 HOH HOH . 
E 4 HOH A 47 101 101 HOH HOH . 
E 4 HOH A 48 102 102 HOH HOH . 
E 4 HOH A 49 103 103 HOH HOH . 
E 4 HOH A 50 104 104 HOH HOH . 
E 4 HOH A 51 105 105 HOH HOH . 
E 4 HOH A 52 106 106 HOH HOH . 
E 4 HOH A 53 107 107 HOH HOH . 
E 4 HOH A 54 108 108 HOH HOH . 
E 4 HOH A 55 109 109 HOH HOH . 
E 4 HOH A 56 111 26 HOH MO6 . 
E 4 HOH A 57 112 26 HOH MO6 . 
E 4 HOH A 58 113 26 HOH MO6 . 
E 4 HOH A 59 114 26 HOH MO6 . 
E 4 HOH A 60 115 26 HOH MO6 . 
E 4 HOH A 61 116 26 HOH MO6 . 
F 4 HOH B 1 27 27 HOH HOH . 
F 4 HOH B 2 28 28 HOH HOH . 
F 4 HOH B 3 32 32 HOH HOH . 
F 4 HOH B 4 35 35 HOH HOH . 
F 4 HOH B 5 36 36 HOH HOH . 
F 4 HOH B 6 39 39 HOH HOH . 
F 4 HOH B 7 46 46 HOH HOH . 
F 4 HOH B 8 48 48 HOH HOH . 
F 4 HOH B 9 51 51 HOH HOH . 
F 4 HOH B 10 53 53 HOH HOH . 
F 4 HOH B 11 56 56 HOH HOH . 
F 4 HOH B 12 57 57 HOH HOH . 
F 4 HOH B 13 59 59 HOH HOH . 
F 4 HOH B 14 61 61 HOH HOH . 
F 4 HOH B 15 64 64 HOH HOH . 
F 4 HOH B 16 68 68 HOH HOH . 
F 4 HOH B 17 71 71 HOH HOH . 
F 4 HOH B 18 73 73 HOH HOH . 
F 4 HOH B 19 74 74 HOH HOH . 
F 4 HOH B 20 77 77 HOH HOH . 
F 4 HOH B 21 81 81 HOH HOH . 
F 4 HOH B 22 82 82 HOH HOH . 
F 4 HOH B 23 84 84 HOH HOH . 
F 4 HOH B 24 85 85 HOH HOH . 
F 4 HOH B 25 96 96 HOH HOH . 
F 4 HOH B 26 97 97 HOH HOH . 
F 4 HOH B 27 98 98 HOH HOH . 
F 4 HOH B 28 99 99 HOH HOH . 
F 4 HOH B 29 110 110 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               10.441 
_atom_site.Cartn_y               9.633 
_atom_site.Cartn_z               13.019 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        22.07 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           26 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#