data_10GS # _model_server_result.job_id SdHOCLm1AMb-FvcBXkDW9A _model_server_result.datetime_utc '2024-10-12 22:21:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 10gs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":210}' # _entry.id 10GS # _exptl.entry_id 10GS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 473.542 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-gamma-glutamyl-S-benzyl-N-[(S)-carboxy(phenyl)methyl]-L-cysteinamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.19 _cell.angle_gamma 90 _cell.entry_id 10GS _cell.length_a 79.723 _cell.length_b 90.46 _cell.length_c 69.404 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 10GS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C23 H27 N3 O6 S' _chem_comp.formula_weight 473.542 _chem_comp.id VWW _chem_comp.mon_nstd_flag . _chem_comp.name L-gamma-glutamyl-S-benzyl-N-[(S)-carboxy(phenyl)methyl]-L-cysteinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA VWW sing 401 n n N H VWW sing 402 n n N H2 VWW sing 403 n n CA C VWW sing 404 n n CA CB VWW sing 405 n n CA HA VWW sing 406 n n C O VWW doub 407 n n C OXT VWW sing 408 n n CB CG VWW sing 409 n n CB HB2 VWW sing 410 n n CB HB3 VWW sing 411 n n CG CD VWW sing 412 n n CG HG2 VWW sing 413 n n CG HG3 VWW sing 414 n n CD OE1 VWW doub 415 n n OXT HXT VWW sing 416 n n N1 CA1 VWW sing 417 n n N1 H1 VWW sing 418 n n CA1 CB1 VWW sing 419 n n CA1 C1 VWW sing 420 n n CA1 HA1 VWW sing 421 n n CB1 SG VWW sing 422 n n CB1 HB21 VWW sing 423 n n CB1 HB31 VWW sing 424 n n SG CD1 VWW sing 425 n n CD1 CE VWW sing 426 n n CD1 HD2 VWW sing 427 n n CD1 HD3 VWW sing 428 n n CE CZ1 VWW doub 429 n y CE CZ2 VWW sing 430 n y CZ1 CT1 VWW sing 431 n y CZ1 HZ1 VWW sing 432 n n CZ2 CT2 VWW doub 433 n y CZ2 HZ2 VWW sing 434 n n CT1 CH VWW doub 435 n y CT1 HT1 VWW sing 436 n n CT2 CH VWW sing 437 n y CT2 HT2 VWW sing 438 n n CH HH VWW sing 439 n n C1 O1 VWW doub 440 n n N2 CA2 VWW sing 441 n n N2 H3 VWW sing 442 n n CA2 CB2 VWW sing 443 n n CA2 C2 VWW sing 444 n n CA2 HA2 VWW sing 445 n n CB2 CG1 VWW sing 446 n y CB2 CG2 VWW doub 447 n y CG1 CD11 VWW doub 448 n y CG1 HG1 VWW sing 449 n n CD11 CE1 VWW sing 450 n y CD11 HD1 VWW sing 451 n n CE1 CD2 VWW doub 452 n y CE1 HE VWW sing 453 n n CD2 CG2 VWW sing 454 n y CD2 HD21 VWW sing 455 n n CG2 HG21 VWW sing 456 n n C2 O2 VWW doub 457 n n C2 OXT1 VWW sing 458 n n OXT1 HXT1 VWW sing 459 n n CD N1 VWW sing 460 n n C1 N2 VWW sing 461 n n # _atom_sites.entry_id 10GS _atom_sites.fract_transf_matrix[1][1] 0.012543 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001805 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011055 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014557 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VWW A 1 210 1 VWW GLU . D 3 MES A 1 211 1 MES MES . E 2 VWW B 1 210 1 VWW GLU . F 3 MES B 1 211 1 MES MES . G 4 HOH A 1 212 3 HOH HOH . G 4 HOH A 2 213 6 HOH HOH . G 4 HOH A 3 214 7 HOH HOH . G 4 HOH A 4 215 8 HOH HOH . G 4 HOH A 5 216 9 HOH HOH . G 4 HOH A 6 217 11 HOH HOH . G 4 HOH A 7 218 12 HOH HOH . G 4 HOH A 8 219 14 HOH HOH . G 4 HOH A 9 220 18 HOH HOH . G 4 HOH A 10 221 20 HOH HOH . G 4 HOH A 11 222 21 HOH HOH . G 4 HOH A 12 223 23 HOH HOH . G 4 HOH A 13 224 25 HOH HOH . G 4 HOH A 14 225 26 HOH HOH . G 4 HOH A 15 226 27 HOH HOH . G 4 HOH A 16 227 28 HOH HOH . G 4 HOH A 17 228 29 HOH HOH . G 4 HOH A 18 229 31 HOH HOH . G 4 HOH A 19 230 32 HOH HOH . G 4 HOH A 20 231 35 HOH HOH . G 4 HOH A 21 232 37 HOH HOH . G 4 HOH A 22 233 39 HOH HOH . G 4 HOH A 23 234 40 HOH HOH . G 4 HOH A 24 235 43 HOH HOH . G 4 HOH A 25 236 44 HOH HOH . G 4 HOH A 26 237 45 HOH HOH . G 4 HOH A 27 238 46 HOH HOH . G 4 HOH A 28 239 47 HOH HOH . G 4 HOH A 29 240 48 HOH HOH . G 4 HOH A 30 241 49 HOH HOH . G 4 HOH A 31 242 50 HOH HOH . G 4 HOH A 32 243 51 HOH HOH . G 4 HOH A 33 244 52 HOH HOH . G 4 HOH A 34 245 53 HOH HOH . G 4 HOH A 35 246 59 HOH HOH . G 4 HOH A 36 247 62 HOH HOH . G 4 HOH A 37 248 63 HOH HOH . G 4 HOH A 38 249 65 HOH HOH . G 4 HOH A 39 250 66 HOH HOH . G 4 HOH A 40 251 68 HOH HOH . G 4 HOH A 41 252 74 HOH HOH . G 4 HOH A 42 253 76 HOH HOH . G 4 HOH A 43 254 81 HOH HOH . G 4 HOH A 44 255 82 HOH HOH . G 4 HOH A 45 256 83 HOH HOH . G 4 HOH A 46 257 85 HOH HOH . G 4 HOH A 47 258 86 HOH HOH . G 4 HOH A 48 259 89 HOH HOH . G 4 HOH A 49 260 91 HOH HOH . G 4 HOH A 50 261 92 HOH HOH . G 4 HOH A 51 262 94 HOH HOH . G 4 HOH A 52 263 96 HOH HOH . G 4 HOH A 53 264 98 HOH HOH . G 4 HOH A 54 265 100 HOH HOH . G 4 HOH A 55 266 104 HOH HOH . G 4 HOH A 56 267 105 HOH HOH . G 4 HOH A 57 268 106 HOH HOH . G 4 HOH A 58 269 108 HOH HOH . G 4 HOH A 59 270 109 HOH HOH . G 4 HOH A 60 271 110 HOH HOH . G 4 HOH A 61 272 112 HOH HOH . G 4 HOH A 62 273 117 HOH HOH . G 4 HOH A 63 274 119 HOH HOH . G 4 HOH A 64 275 120 HOH HOH . G 4 HOH A 65 276 123 HOH HOH . G 4 HOH A 66 277 125 HOH HOH . G 4 HOH A 67 278 126 HOH HOH . G 4 HOH A 68 279 130 HOH HOH . G 4 HOH A 69 280 131 HOH HOH . G 4 HOH A 70 281 133 HOH HOH . G 4 HOH A 71 282 134 HOH HOH . G 4 HOH A 72 283 138 HOH HOH . G 4 HOH A 73 284 139 HOH HOH . G 4 HOH A 74 285 140 HOH HOH . G 4 HOH A 75 286 142 HOH HOH . G 4 HOH A 76 287 144 HOH HOH . G 4 HOH A 77 288 145 HOH HOH . G 4 HOH A 78 289 146 HOH HOH . G 4 HOH A 79 290 148 HOH HOH . G 4 HOH A 80 291 149 HOH HOH . G 4 HOH A 81 292 150 HOH HOH . G 4 HOH A 82 293 151 HOH HOH . G 4 HOH A 83 294 152 HOH HOH . G 4 HOH A 84 295 153 HOH HOH . G 4 HOH A 85 296 155 HOH HOH . G 4 HOH A 86 297 158 HOH HOH . G 4 HOH A 87 298 160 HOH HOH . G 4 HOH A 88 299 162 HOH HOH . G 4 HOH A 89 300 163 HOH HOH . G 4 HOH A 90 301 164 HOH HOH . G 4 HOH A 91 302 1 HOH HOH . G 4 HOH A 92 303 19 HOH HOH . G 4 HOH A 93 304 156 HOH HOH . H 4 HOH B 1 212 4 HOH HOH . H 4 HOH B 2 213 5 HOH HOH . H 4 HOH B 3 214 10 HOH HOH . H 4 HOH B 4 215 13 HOH HOH . H 4 HOH B 5 216 15 HOH HOH . H 4 HOH B 6 217 16 HOH HOH . H 4 HOH B 7 218 17 HOH HOH . H 4 HOH B 8 219 22 HOH HOH . H 4 HOH B 9 220 24 HOH HOH . H 4 HOH B 10 221 30 HOH HOH . H 4 HOH B 11 222 33 HOH HOH . H 4 HOH B 12 223 34 HOH HOH . H 4 HOH B 13 224 36 HOH HOH . H 4 HOH B 14 225 38 HOH HOH . H 4 HOH B 15 226 41 HOH HOH . H 4 HOH B 16 227 42 HOH HOH . H 4 HOH B 17 228 54 HOH HOH . H 4 HOH B 18 229 55 HOH HOH . H 4 HOH B 19 230 56 HOH HOH . H 4 HOH B 20 231 57 HOH HOH . H 4 HOH B 21 232 58 HOH HOH . H 4 HOH B 22 233 60 HOH HOH . H 4 HOH B 23 234 64 HOH HOH . H 4 HOH B 24 235 67 HOH HOH . H 4 HOH B 25 236 69 HOH HOH . H 4 HOH B 26 237 70 HOH HOH . H 4 HOH B 27 238 71 HOH HOH . H 4 HOH B 28 239 72 HOH HOH . H 4 HOH B 29 240 73 HOH HOH . H 4 HOH B 30 241 75 HOH HOH . H 4 HOH B 31 242 77 HOH HOH . H 4 HOH B 32 243 78 HOH HOH . H 4 HOH B 33 244 79 HOH HOH . H 4 HOH B 34 245 80 HOH HOH . H 4 HOH B 35 246 84 HOH HOH . H 4 HOH B 36 247 87 HOH HOH . H 4 HOH B 37 248 88 HOH HOH . H 4 HOH B 38 249 90 HOH HOH . H 4 HOH B 39 250 93 HOH HOH . H 4 HOH B 40 251 95 HOH HOH . H 4 HOH B 41 252 97 HOH HOH . H 4 HOH B 42 253 99 HOH HOH . H 4 HOH B 43 254 101 HOH HOH . H 4 HOH B 44 255 102 HOH HOH . H 4 HOH B 45 256 103 HOH HOH . H 4 HOH B 46 257 107 HOH HOH . H 4 HOH B 47 258 111 HOH HOH . H 4 HOH B 48 259 113 HOH HOH . H 4 HOH B 49 260 114 HOH HOH . H 4 HOH B 50 261 115 HOH HOH . H 4 HOH B 51 262 116 HOH HOH . H 4 HOH B 52 263 118 HOH HOH . H 4 HOH B 53 264 121 HOH HOH . H 4 HOH B 54 265 122 HOH HOH . H 4 HOH B 55 266 124 HOH HOH . H 4 HOH B 56 267 127 HOH HOH . H 4 HOH B 57 268 128 HOH HOH . H 4 HOH B 58 269 129 HOH HOH . H 4 HOH B 59 270 132 HOH HOH . H 4 HOH B 60 271 135 HOH HOH . H 4 HOH B 61 272 136 HOH HOH . H 4 HOH B 62 273 137 HOH HOH . H 4 HOH B 63 274 141 HOH HOH . H 4 HOH B 64 275 143 HOH HOH . H 4 HOH B 65 276 147 HOH HOH . H 4 HOH B 66 277 154 HOH HOH . H 4 HOH B 67 278 157 HOH HOH . H 4 HOH B 68 279 159 HOH HOH . H 4 HOH B 69 280 161 HOH HOH . H 4 HOH B 70 281 165 HOH HOH . H 4 HOH B 71 282 166 HOH HOH . H 4 HOH B 72 283 167 HOH HOH . H 4 HOH B 73 284 168 HOH HOH . H 4 HOH B 74 285 169 HOH HOH . H 4 HOH B 75 286 2 HOH HOH . H 4 HOH B 76 287 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N VWW . . . E 2 17.077 12.945 10.162 1 16.89 ? N VWW 210 B 1 HETATM 2 C CA VWW . . . E 2 17.306 13.763 8.94 1 21.84 ? CA VWW 210 B 1 HETATM 3 C C VWW . . . E 2 18.253 14.931 9.229 1 24.69 ? C VWW 210 B 1 HETATM 4 O O VWW . . . E 2 18.94 15.391 8.288 1 19.58 ? O VWW 210 B 1 HETATM 5 C CB VWW . . . E 2 15.973 14.285 8.391 1 21.52 ? CB VWW 210 B 1 HETATM 6 C CG VWW . . . E 2 16.106 14.903 7.011 1 21.74 ? CG VWW 210 B 1 HETATM 7 C CD VWW . . . E 2 14.805 15.431 6.46 1 19.99 ? CD VWW 210 B 1 HETATM 8 O OE1 VWW . . . E 2 13.783 15.449 7.146 1 22.91 ? OE1 VWW 210 B 1 HETATM 9 O OXT VWW . . . E 2 18.308 15.365 10.399 1 24.44 ? OXT VWW 210 B 1 HETATM 10 N N1 VWW . . . E 2 14.842 15.822 5.191 1 19.67 ? N1 VWW 210 B 1 HETATM 11 C CA1 VWW . . . E 2 13.684 16.374 4.504 1 22.4 ? CA1 VWW 210 B 1 HETATM 12 C CB1 VWW . . . E 2 13.86 17.88 4.304 1 25.98 ? CB1 VWW 210 B 1 HETATM 13 S SG VWW . . . E 2 13.864 18.87 5.795 1 35.19 ? SG VWW 210 B 1 HETATM 14 C CD1 VWW . . . E 2 12.146 19.418 5.816 1 31.95 ? CD1 VWW 210 B 1 HETATM 15 C CE VWW . . . E 2 11.671 19.986 4.505 1 31.48 ? CE VWW 210 B 1 HETATM 16 C CZ1 VWW . . . E 2 10.584 19.426 3.847 1 31.71 ? CZ1 VWW 210 B 1 HETATM 17 C CZ2 VWW . . . E 2 12.309 21.081 3.929 1 30.47 ? CZ2 VWW 210 B 1 HETATM 18 C CT1 VWW . . . E 2 10.137 19.946 2.637 1 34.94 ? CT1 VWW 210 B 1 HETATM 19 C CT2 VWW . . . E 2 11.868 21.609 2.717 1 29.43 ? CT2 VWW 210 B 1 HETATM 20 C CH VWW . . . E 2 10.781 21.04 2.071 1 29.23 ? CH VWW 210 B 1 HETATM 21 C C1 VWW . . . E 2 13.527 15.754 3.13 1 22.49 ? C1 VWW 210 B 1 HETATM 22 O O1 VWW . . . E 2 14.506 15.367 2.491 1 21.23 ? O1 VWW 210 B 1 HETATM 23 N N2 VWW . . . E 2 12.284 15.705 2.672 1 24.26 ? N2 VWW 210 B 1 HETATM 24 C CA2 VWW . . . E 2 11.953 15.187 1.357 1 26.47 ? CA2 VWW 210 B 1 HETATM 25 C CB2 VWW . . . E 2 10.828 15.943 0.724 1 27.64 ? CB2 VWW 210 B 1 HETATM 26 C CG1 VWW . . . E 2 9.506 15.556 0.922 1 28.67 ? CG1 VWW 210 B 1 HETATM 27 C CD11 VWW . . . E 2 8.46 16.304 0.392 1 26.56 ? CD11 VWW 210 B 1 HETATM 28 C CE1 VWW . . . E 2 8.734 17.449 -0.345 1 24.74 ? CE1 VWW 210 B 1 HETATM 29 C CD2 VWW . . . E 2 10.051 17.84 -0.551 1 27.11 ? CD2 VWW 210 B 1 HETATM 30 C CG2 VWW . . . E 2 11.088 17.086 -0.019 1 27.1 ? CG2 VWW 210 B 1 HETATM 31 C C2 VWW . . . E 2 11.827 13.665 1.299 1 32.59 ? C2 VWW 210 B 1 HETATM 32 O O2 VWW . . . E 2 11.904 13.131 0.176 1 37.14 ? O2 VWW 210 B 1 HETATM 33 O OXT1 VWW . . . E 2 11.666 13.022 2.358 1 31.09 ? OXT1 VWW 210 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #