data_112M # _model_server_result.job_id JQsF8u0QRth5bxvMdVy2Wg _model_server_result.datetime_utc '2024-10-10 17:16:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 112m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":155}' # _entry.id 112M # _exptl.entry_id 112M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 112M _cell.length_a 91.42 _cell.length_b 91.42 _cell.length_c 45.58 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 112M _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 C FE HEM . A HEM 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc2 C FE HEM . A HEM 155 1_555 D C NPN . A NPN 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 112M _atom_sites.fract_transf_matrix[1][1] 0.010939 _atom_sites.fract_transf_matrix[1][2] 0.006315 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 157 157 SO4 SO4 . C 3 HEM A 1 155 155 HEM HEM . D 4 NPN A 1 156 156 NPN NPN . E 5 HOH A 1 201 201 HOH HOH . E 5 HOH A 2 202 202 HOH HOH . E 5 HOH A 3 203 203 HOH HOH . E 5 HOH A 4 204 204 HOH HOH . E 5 HOH A 5 205 205 HOH HOH . E 5 HOH A 6 206 206 HOH HOH . E 5 HOH A 7 207 207 HOH HOH . E 5 HOH A 8 208 208 HOH HOH . E 5 HOH A 9 209 209 HOH HOH . E 5 HOH A 10 210 210 HOH HOH . E 5 HOH A 11 211 211 HOH HOH . E 5 HOH A 12 212 212 HOH HOH . E 5 HOH A 13 213 213 HOH HOH . E 5 HOH A 14 214 214 HOH HOH . E 5 HOH A 15 215 215 HOH HOH . E 5 HOH A 16 216 216 HOH HOH . E 5 HOH A 17 217 217 HOH HOH . E 5 HOH A 18 218 218 HOH HOH . E 5 HOH A 19 219 219 HOH HOH . E 5 HOH A 20 220 220 HOH HOH . E 5 HOH A 21 221 221 HOH HOH . E 5 HOH A 22 222 222 HOH HOH . E 5 HOH A 23 223 223 HOH HOH . E 5 HOH A 24 224 224 HOH HOH . E 5 HOH A 25 225 225 HOH HOH . E 5 HOH A 26 226 226 HOH HOH . E 5 HOH A 27 227 227 HOH HOH . E 5 HOH A 28 228 228 HOH HOH . E 5 HOH A 29 229 229 HOH HOH . E 5 HOH A 30 230 230 HOH HOH . E 5 HOH A 31 231 231 HOH HOH . E 5 HOH A 32 232 232 HOH HOH . E 5 HOH A 33 233 233 HOH HOH . E 5 HOH A 34 234 234 HOH HOH . E 5 HOH A 35 235 235 HOH HOH . E 5 HOH A 36 236 236 HOH HOH . E 5 HOH A 37 237 237 HOH HOH . E 5 HOH A 38 238 238 HOH HOH . E 5 HOH A 39 239 239 HOH HOH . E 5 HOH A 40 240 240 HOH HOH . E 5 HOH A 41 241 241 HOH HOH . E 5 HOH A 42 242 242 HOH HOH . E 5 HOH A 43 243 243 HOH HOH . E 5 HOH A 44 244 244 HOH HOH . E 5 HOH A 45 245 245 HOH HOH . E 5 HOH A 46 246 246 HOH HOH . E 5 HOH A 47 247 247 HOH HOH . E 5 HOH A 48 248 248 HOH HOH . E 5 HOH A 49 249 249 HOH HOH . E 5 HOH A 50 250 250 HOH HOH . E 5 HOH A 51 251 251 HOH HOH . E 5 HOH A 52 252 252 HOH HOH . E 5 HOH A 53 253 253 HOH HOH . E 5 HOH A 54 254 254 HOH HOH . E 5 HOH A 55 255 255 HOH HOH . E 5 HOH A 56 256 256 HOH HOH . E 5 HOH A 57 257 257 HOH HOH . E 5 HOH A 58 258 258 HOH HOH . E 5 HOH A 59 259 259 HOH HOH . E 5 HOH A 60 260 260 HOH HOH . E 5 HOH A 61 261 261 HOH HOH . E 5 HOH A 62 262 262 HOH HOH . E 5 HOH A 63 263 263 HOH HOH . E 5 HOH A 64 264 264 HOH HOH . E 5 HOH A 65 265 265 HOH HOH . E 5 HOH A 66 266 266 HOH HOH . E 5 HOH A 67 267 267 HOH HOH . E 5 HOH A 68 268 268 HOH HOH . E 5 HOH A 69 269 269 HOH HOH . E 5 HOH A 70 270 270 HOH HOH . E 5 HOH A 71 271 271 HOH HOH . E 5 HOH A 72 272 272 HOH HOH . E 5 HOH A 73 273 273 HOH HOH . E 5 HOH A 74 274 274 HOH HOH . E 5 HOH A 75 275 275 HOH HOH . E 5 HOH A 76 276 276 HOH HOH . E 5 HOH A 77 277 277 HOH HOH . E 5 HOH A 78 278 278 HOH HOH . E 5 HOH A 79 279 279 HOH HOH . E 5 HOH A 80 280 280 HOH HOH . E 5 HOH A 81 281 281 HOH HOH . E 5 HOH A 82 282 282 HOH HOH . E 5 HOH A 83 283 283 HOH HOH . E 5 HOH A 84 284 284 HOH HOH . E 5 HOH A 85 285 285 HOH HOH . E 5 HOH A 86 286 286 HOH HOH . E 5 HOH A 87 287 287 HOH HOH . E 5 HOH A 88 288 288 HOH HOH . E 5 HOH A 89 289 289 HOH HOH . E 5 HOH A 90 290 290 HOH HOH . E 5 HOH A 91 291 291 HOH HOH . E 5 HOH A 92 292 292 HOH HOH . E 5 HOH A 93 293 293 HOH HOH . E 5 HOH A 94 294 294 HOH HOH . E 5 HOH A 95 295 295 HOH HOH . E 5 HOH A 96 296 296 HOH HOH . E 5 HOH A 97 297 297 HOH HOH . E 5 HOH A 98 298 298 HOH HOH . E 5 HOH A 99 299 299 HOH HOH . E 5 HOH A 100 300 300 HOH HOH . E 5 HOH A 101 301 301 HOH HOH . E 5 HOH A 102 302 302 HOH HOH . E 5 HOH A 103 303 303 HOH HOH . E 5 HOH A 104 304 304 HOH HOH . E 5 HOH A 105 305 305 HOH HOH . E 5 HOH A 106 306 306 HOH HOH . E 5 HOH A 107 307 307 HOH HOH . E 5 HOH A 108 308 308 HOH HOH . E 5 HOH A 109 309 309 HOH HOH . E 5 HOH A 110 310 310 HOH HOH . E 5 HOH A 111 311 311 HOH HOH . E 5 HOH A 112 312 312 HOH HOH . E 5 HOH A 113 313 313 HOH HOH . E 5 HOH A 114 314 314 HOH HOH . E 5 HOH A 115 315 315 HOH HOH . E 5 HOH A 116 316 316 HOH HOH . E 5 HOH A 117 317 317 HOH HOH . E 5 HOH A 118 318 318 HOH HOH . E 5 HOH A 119 319 319 HOH HOH . E 5 HOH A 120 320 320 HOH HOH . E 5 HOH A 121 321 321 HOH HOH . E 5 HOH A 122 322 322 HOH HOH . E 5 HOH A 123 323 323 HOH HOH . E 5 HOH A 124 324 324 HOH HOH . E 5 HOH A 125 325 325 HOH HOH . E 5 HOH A 126 326 326 HOH HOH . E 5 HOH A 127 327 327 HOH HOH . E 5 HOH A 128 328 328 HOH HOH . E 5 HOH A 129 329 329 HOH HOH . E 5 HOH A 130 330 330 HOH HOH . E 5 HOH A 131 331 331 HOH HOH . E 5 HOH A 132 332 332 HOH HOH . E 5 HOH A 133 333 333 HOH HOH . E 5 HOH A 134 334 334 HOH HOH . E 5 HOH A 135 335 335 HOH HOH . E 5 HOH A 136 336 336 HOH HOH . E 5 HOH A 137 337 337 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 37.93 2.339 11.305 1 13.08 ? CHA HEM 155 A 1 HETATM 2 C CHB HEM . . . C 3 37.214 5.297 7.631 1 12.15 ? CHB HEM 155 A 1 HETATM 3 C CHC HEM . . . C 3 32.721 6.162 9.048 1 11.63 ? CHC HEM 155 A 1 HETATM 4 C CHD HEM . . . C 3 33.438 3.093 12.748 1 12.69 ? CHD HEM 155 A 1 HETATM 5 C C1A HEM . . . C 3 38.159 3.108 10.182 1 12.71 ? C1A HEM 155 A 1 HETATM 6 C C2A HEM . . . C 3 39.417 3.131 9.415 1 13.25 ? C2A HEM 155 A 1 HETATM 7 C C3A HEM . . . C 3 39.18 3.972 8.396 1 12.96 ? C3A HEM 155 A 1 HETATM 8 C C4A HEM . . . C 3 37.816 4.454 8.531 1 12.55 ? C4A HEM 155 A 1 HETATM 9 C CMA HEM . . . C 3 40.17 4.31 7.294 1 12.69 ? CMA HEM 155 A 1 HETATM 10 C CAA HEM . . . C 3 40.712 2.306 9.506 1 13.99 ? CAA HEM 155 A 1 HETATM 11 C CBA HEM . . . C 3 40.759 0.792 9.256 1 14.88 ? CBA HEM 155 A 1 HETATM 12 C CGA HEM . . . C 3 39.386 0.158 9.119 1 15.84 ? CGA HEM 155 A 1 HETATM 13 O O1A HEM . . . C 3 38.875 -0.378 10.121 1 15.3 ? O1A HEM 155 A 1 HETATM 14 O O2A HEM . . . C 3 38.818 0.193 8.008 1 16.41 ? O2A HEM 155 A 1 HETATM 15 C C1B HEM . . . C 3 35.92 5.761 7.645 1 12.48 ? C1B HEM 155 A 1 HETATM 16 C C2B HEM . . . C 3 35.406 6.71 6.671 1 12.31 ? C2B HEM 155 A 1 HETATM 17 C C3B HEM . . . C 3 34.169 7.034 7.058 1 12.94 ? C3B HEM 155 A 1 HETATM 18 C C4B HEM . . . C 3 33.878 6.211 8.278 1 12.59 ? C4B HEM 155 A 1 HETATM 19 C CMB HEM . . . C 3 36.06 7.237 5.391 1 11.74 ? CMB HEM 155 A 1 HETATM 20 C CAB HEM . . . C 3 33.598 8.101 6.372 1 13.92 ? CAB HEM 155 A 1 HETATM 21 C CBB HEM . . . C 3 32.37 8.786 6.456 1 15.34 ? CBB HEM 155 A 1 HETATM 22 C C1C HEM . . . C 3 32.497 5.381 10.188 1 11.52 ? C1C HEM 155 A 1 HETATM 23 C C2C HEM . . . C 3 31.307 5.458 11.063 1 11.91 ? C2C HEM 155 A 1 HETATM 24 C C3C HEM . . . C 3 31.527 4.598 12.129 1 12.17 ? C3C HEM 155 A 1 HETATM 25 C C4C HEM . . . C 3 32.833 3.994 11.869 1 11.84 ? C4C HEM 155 A 1 HETATM 26 C CMC HEM . . . C 3 30.072 6.323 10.808 1 10.49 ? CMC HEM 155 A 1 HETATM 27 C CAC HEM . . . C 3 30.865 4.432 13.365 1 12.62 ? CAC HEM 155 A 1 HETATM 28 C CBC HEM . . . C 3 29.743 5.164 13.945 1 13.13 ? CBC HEM 155 A 1 HETATM 29 C C1D HEM . . . C 3 34.713 2.562 12.67 1 13.34 ? C1D HEM 155 A 1 HETATM 30 C C2D HEM . . . C 3 35.298 1.672 13.638 1 13.78 ? C2D HEM 155 A 1 HETATM 31 C C3D HEM . . . C 3 36.575 1.496 13.231 1 13.92 ? C3D HEM 155 A 1 HETATM 32 C C4D HEM . . . C 3 36.747 2.236 12.015 1 13.16 ? C4D HEM 155 A 1 HETATM 33 C CMD HEM . . . C 3 34.594 1.03 14.835 1 13.93 ? CMD HEM 155 A 1 HETATM 34 C CAD HEM . . . C 3 37.741 0.869 13.962 1 16.7 ? CAD HEM 155 A 1 HETATM 35 C CBD HEM . . . C 3 38.178 1.552 15.243 1 19.9 ? CBD HEM 155 A 1 HETATM 36 C CGD HEM . . . C 3 39.374 0.868 15.879 1 21.18 ? CGD HEM 155 A 1 HETATM 37 O O1D HEM . . . C 3 39.181 0.138 16.877 1 23.16 ? O1D HEM 155 A 1 HETATM 38 O O2D HEM . . . C 3 40.505 1.052 15.376 1 22.81 ? O2D HEM 155 A 1 HETATM 39 N NA HEM . . . C 3 37.204 3.928 9.628 1 11.57 ? NA HEM 155 A 1 HETATM 40 N NB HEM . . . C 3 34.982 5.448 8.602 1 12.28 ? NB HEM 155 A 1 HETATM 41 N NC HEM . . . C 3 33.409 4.477 10.705 1 11.49 ? NC HEM 155 A 1 HETATM 42 N ND HEM . . . C 3 35.608 2.882 11.673 1 12.66 ? ND HEM 155 A 1 HETATM 43 FE FE HEM . . . C 3 35.33 4.211 10.193 1 13.18 ? FE HEM 155 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #