data_12AS # _model_server_result.job_id Lxo2LINz1OSTgH9wSJssGw _model_server_result.datetime_utc '2024-11-21 14:27:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 12as # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":332}' # _entry.id 12AS # _exptl.entry_id 12AS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.59 _cell.angle_gamma 90 _cell.entry_id 12AS _cell.length_a 53 _cell.length_b 126.13 _cell.length_c 52.86 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 12AS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 12AS _atom_sites.fract_transf_matrix[1][1] 0.018868 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005264 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007928 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01964 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ASN A 1 331 1 ASN ASN . D 3 AMP A 1 332 2 AMP AMP . E 2 ASN B 1 331 1 ASN ASN . F 3 AMP B 1 332 2 AMP AMP . G 4 HOH A 1 333 8 HOH HOH . G 4 HOH A 2 334 9 HOH HOH . G 4 HOH A 3 335 10 HOH HOH . G 4 HOH A 4 336 11 HOH HOH . G 4 HOH A 5 337 15 HOH HOH . G 4 HOH A 6 338 16 HOH HOH . G 4 HOH A 7 339 17 HOH HOH . G 4 HOH A 8 340 19 HOH HOH . G 4 HOH A 9 341 21 HOH HOH . G 4 HOH A 10 342 22 HOH HOH . G 4 HOH A 11 343 24 HOH HOH . G 4 HOH A 12 344 25 HOH HOH . G 4 HOH A 13 345 30 HOH HOH . G 4 HOH A 14 346 31 HOH HOH . G 4 HOH A 15 347 32 HOH HOH . G 4 HOH A 16 348 33 HOH HOH . G 4 HOH A 17 349 36 HOH HOH . G 4 HOH A 18 350 38 HOH HOH . G 4 HOH A 19 351 39 HOH HOH . G 4 HOH A 20 352 42 HOH HOH . G 4 HOH A 21 353 45 HOH HOH . G 4 HOH A 22 354 46 HOH HOH . G 4 HOH A 23 355 47 HOH HOH . G 4 HOH A 24 356 48 HOH HOH . G 4 HOH A 25 357 49 HOH HOH . G 4 HOH A 26 358 50 HOH HOH . G 4 HOH A 27 359 52 HOH HOH . G 4 HOH A 28 360 53 HOH HOH . G 4 HOH A 29 361 55 HOH HOH . G 4 HOH A 30 362 59 HOH HOH . G 4 HOH A 31 363 60 HOH HOH . G 4 HOH A 32 364 61 HOH HOH . G 4 HOH A 33 365 62 HOH HOH . G 4 HOH A 34 366 64 HOH HOH . G 4 HOH A 35 367 68 HOH HOH . G 4 HOH A 36 368 74 HOH HOH . G 4 HOH A 37 369 76 HOH HOH . G 4 HOH A 38 370 77 HOH HOH . G 4 HOH A 39 371 79 HOH HOH . G 4 HOH A 40 372 82 HOH HOH . G 4 HOH A 41 373 84 HOH HOH . G 4 HOH A 42 374 86 HOH HOH . G 4 HOH A 43 375 87 HOH HOH . G 4 HOH A 44 376 88 HOH HOH . G 4 HOH A 45 377 90 HOH HOH . G 4 HOH A 46 378 91 HOH HOH . G 4 HOH A 47 379 93 HOH HOH . G 4 HOH A 48 380 94 HOH HOH . G 4 HOH A 49 381 95 HOH HOH . G 4 HOH A 50 382 97 HOH HOH . G 4 HOH A 51 383 98 HOH HOH . G 4 HOH A 52 384 101 HOH HOH . G 4 HOH A 53 385 102 HOH HOH . G 4 HOH A 54 386 106 HOH HOH . G 4 HOH A 55 387 107 HOH HOH . G 4 HOH A 56 388 109 HOH HOH . G 4 HOH A 57 389 111 HOH HOH . G 4 HOH A 58 390 112 HOH HOH . G 4 HOH A 59 391 113 HOH HOH . G 4 HOH A 60 392 114 HOH HOH . G 4 HOH A 61 393 117 HOH HOH . G 4 HOH A 62 394 120 HOH HOH . G 4 HOH A 63 395 121 HOH HOH . G 4 HOH A 64 396 123 HOH HOH . G 4 HOH A 65 397 130 HOH HOH . G 4 HOH A 66 398 132 HOH HOH . G 4 HOH A 67 399 134 HOH HOH . G 4 HOH A 68 400 137 HOH HOH . G 4 HOH A 69 401 140 HOH HOH . G 4 HOH A 70 402 142 HOH HOH . G 4 HOH A 71 403 144 HOH HOH . G 4 HOH A 72 404 148 HOH HOH . G 4 HOH A 73 405 150 HOH HOH . G 4 HOH A 74 406 153 HOH HOH . G 4 HOH A 75 407 156 HOH HOH . G 4 HOH A 76 408 157 HOH HOH . G 4 HOH A 77 409 160 HOH HOH . G 4 HOH A 78 410 161 HOH HOH . G 4 HOH A 79 411 162 HOH HOH . G 4 HOH A 80 412 163 HOH HOH . G 4 HOH A 81 413 164 HOH HOH . G 4 HOH A 82 414 165 HOH HOH . G 4 HOH A 83 415 166 HOH HOH . G 4 HOH A 84 416 168 HOH HOH . G 4 HOH A 85 417 169 HOH HOH . G 4 HOH A 86 418 174 HOH HOH . G 4 HOH A 87 419 177 HOH HOH . G 4 HOH A 88 420 178 HOH HOH . G 4 HOH A 89 421 179 HOH HOH . G 4 HOH A 90 422 181 HOH HOH . G 4 HOH A 91 423 185 HOH HOH . G 4 HOH A 92 424 187 HOH HOH . G 4 HOH A 93 425 188 HOH HOH . G 4 HOH A 94 426 189 HOH HOH . G 4 HOH A 95 427 191 HOH HOH . G 4 HOH A 96 428 193 HOH HOH . G 4 HOH A 97 429 194 HOH HOH . G 4 HOH A 98 430 195 HOH HOH . G 4 HOH A 99 431 197 HOH HOH . G 4 HOH A 100 432 199 HOH HOH . G 4 HOH A 101 433 202 HOH HOH . G 4 HOH A 102 434 203 HOH HOH . H 4 HOH B 1 333 1 HOH HOH . H 4 HOH B 2 334 2 HOH HOH . H 4 HOH B 3 335 3 HOH HOH . H 4 HOH B 4 336 4 HOH HOH . H 4 HOH B 5 337 5 HOH HOH . H 4 HOH B 6 338 6 HOH HOH . H 4 HOH B 7 339 7 HOH HOH . H 4 HOH B 8 340 12 HOH HOH . H 4 HOH B 9 341 13 HOH HOH . H 4 HOH B 10 342 14 HOH HOH . H 4 HOH B 11 343 18 HOH HOH . H 4 HOH B 12 344 20 HOH HOH . H 4 HOH B 13 345 23 HOH HOH . H 4 HOH B 14 346 26 HOH HOH . H 4 HOH B 15 347 27 HOH HOH . H 4 HOH B 16 348 28 HOH HOH . H 4 HOH B 17 349 29 HOH HOH . H 4 HOH B 18 350 34 HOH HOH . H 4 HOH B 19 351 35 HOH HOH . H 4 HOH B 20 352 37 HOH HOH . H 4 HOH B 21 353 40 HOH HOH . H 4 HOH B 22 354 41 HOH HOH . H 4 HOH B 23 355 43 HOH HOH . H 4 HOH B 24 356 44 HOH HOH . H 4 HOH B 25 357 51 HOH HOH . H 4 HOH B 26 358 54 HOH HOH . H 4 HOH B 27 359 56 HOH HOH . H 4 HOH B 28 360 57 HOH HOH . H 4 HOH B 29 361 58 HOH HOH . H 4 HOH B 30 362 63 HOH HOH . H 4 HOH B 31 363 65 HOH HOH . H 4 HOH B 32 364 66 HOH HOH . H 4 HOH B 33 365 67 HOH HOH . H 4 HOH B 34 366 69 HOH HOH . H 4 HOH B 35 367 70 HOH HOH . H 4 HOH B 36 368 71 HOH HOH . H 4 HOH B 37 369 72 HOH HOH . H 4 HOH B 38 370 73 HOH HOH . H 4 HOH B 39 371 75 HOH HOH . H 4 HOH B 40 372 78 HOH HOH . H 4 HOH B 41 373 80 HOH HOH . H 4 HOH B 42 374 81 HOH HOH . H 4 HOH B 43 375 83 HOH HOH . H 4 HOH B 44 376 85 HOH HOH . H 4 HOH B 45 377 89 HOH HOH . H 4 HOH B 46 378 92 HOH HOH . H 4 HOH B 47 379 96 HOH HOH . H 4 HOH B 48 380 99 HOH HOH . H 4 HOH B 49 381 100 HOH HOH . H 4 HOH B 50 382 103 HOH HOH . H 4 HOH B 51 383 104 HOH HOH . H 4 HOH B 52 384 105 HOH HOH . H 4 HOH B 53 385 108 HOH HOH . H 4 HOH B 54 386 110 HOH HOH . H 4 HOH B 55 387 115 HOH HOH . H 4 HOH B 56 388 116 HOH HOH . H 4 HOH B 57 389 118 HOH HOH . H 4 HOH B 58 390 119 HOH HOH . H 4 HOH B 59 391 122 HOH HOH . H 4 HOH B 60 392 124 HOH HOH . H 4 HOH B 61 393 125 HOH HOH . H 4 HOH B 62 394 126 HOH HOH . H 4 HOH B 63 395 127 HOH HOH . H 4 HOH B 64 396 128 HOH HOH . H 4 HOH B 65 397 129 HOH HOH . H 4 HOH B 66 398 131 HOH HOH . H 4 HOH B 67 399 133 HOH HOH . H 4 HOH B 68 400 135 HOH HOH . H 4 HOH B 69 401 136 HOH HOH . H 4 HOH B 70 402 138 HOH HOH . H 4 HOH B 71 403 139 HOH HOH . H 4 HOH B 72 404 141 HOH HOH . H 4 HOH B 73 405 143 HOH HOH . H 4 HOH B 74 406 145 HOH HOH . H 4 HOH B 75 407 146 HOH HOH . H 4 HOH B 76 408 147 HOH HOH . H 4 HOH B 77 409 149 HOH HOH . H 4 HOH B 78 410 151 HOH HOH . H 4 HOH B 79 411 152 HOH HOH . H 4 HOH B 80 412 154 HOH HOH . H 4 HOH B 81 413 155 HOH HOH . H 4 HOH B 82 414 158 HOH HOH . H 4 HOH B 83 415 159 HOH HOH . H 4 HOH B 84 416 167 HOH HOH . H 4 HOH B 85 417 170 HOH HOH . H 4 HOH B 86 418 171 HOH HOH . H 4 HOH B 87 419 172 HOH HOH . H 4 HOH B 88 420 173 HOH HOH . H 4 HOH B 89 421 175 HOH HOH . H 4 HOH B 90 422 176 HOH HOH . H 4 HOH B 91 423 180 HOH HOH . H 4 HOH B 92 424 182 HOH HOH . H 4 HOH B 93 425 183 HOH HOH . H 4 HOH B 94 426 184 HOH HOH . H 4 HOH B 95 427 186 HOH HOH . H 4 HOH B 96 428 190 HOH HOH . H 4 HOH B 97 429 192 HOH HOH . H 4 HOH B 98 430 196 HOH HOH . H 4 HOH B 99 431 198 HOH HOH . H 4 HOH B 100 432 200 HOH HOH . H 4 HOH B 101 433 201 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . F 3 39.692 48.035 16.041 1 25.5 ? P AMP 332 B 1 HETATM 2 O O1P AMP . . . F 3 40.107 49.319 16.688 1 30.03 ? O1P AMP 332 B 1 HETATM 3 O O2P AMP . . . F 3 38.214 47.993 15.822 1 13.88 ? O2P AMP 332 B 1 HETATM 4 O O3P AMP . . . F 3 40.486 47.9 14.696 1 27.1 ? O3P AMP 332 B 1 HETATM 5 O O5' AMP . . . F 3 40.194 46.764 16.921 1 12.34 ? O5' AMP 332 B 1 HETATM 6 C C5' AMP . . . F 3 39.613 46.451 18.194 1 8.33 ? C5' AMP 332 B 1 HETATM 7 C C4' AMP . . . F 3 40.499 45.343 18.793 1 10.82 ? C4' AMP 332 B 1 HETATM 8 O O4' AMP . . . F 3 40.497 44.116 18.005 1 2.57 ? O4' AMP 332 B 1 HETATM 9 C C3' AMP . . . F 3 41.952 45.88 18.795 1 5.22 ? C3' AMP 332 B 1 HETATM 10 O O3' AMP . . . F 3 42.152 46.601 20.04 1 2.97 ? O3' AMP 332 B 1 HETATM 11 C C2' AMP . . . F 3 42.78 44.593 18.705 1 17.54 ? C2' AMP 332 B 1 HETATM 12 O O2' AMP . . . F 3 43.073 44.15 20.053 1 2 ? O2' AMP 332 B 1 HETATM 13 C C1' AMP . . . F 3 41.852 43.645 17.92 1 2 ? C1' AMP 332 B 1 HETATM 14 N N9 AMP . . . F 3 42.166 43.581 16.5 1 4.65 ? N9 AMP 332 B 1 HETATM 15 C C8 AMP . . . F 3 41.93 44.486 15.537 1 9.38 ? C8 AMP 332 B 1 HETATM 16 N N7 AMP . . . F 3 42.415 44.166 14.29 1 7.29 ? N7 AMP 332 B 1 HETATM 17 C C5 AMP . . . F 3 42.989 42.947 14.539 1 14.48 ? C5 AMP 332 B 1 HETATM 18 C C6 AMP . . . F 3 43.672 42.082 13.687 1 9.82 ? C6 AMP 332 B 1 HETATM 19 N N6 AMP . . . F 3 43.904 42.327 12.399 1 2 ? N6 AMP 332 B 1 HETATM 20 N N1 AMP . . . F 3 44.14 40.939 14.227 1 24.49 ? N1 AMP 332 B 1 HETATM 21 C C2 AMP . . . F 3 43.922 40.698 15.521 1 10.59 ? C2 AMP 332 B 1 HETATM 22 N N3 AMP . . . F 3 43.29 41.433 16.429 1 6.08 ? N3 AMP 332 B 1 HETATM 23 C C4 AMP . . . F 3 42.842 42.574 15.86 1 10.97 ? C4 AMP 332 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #