data_12GS # _model_server_result.job_id xbL2DH4spZqWlCWURq5DpQ _model_server_result.datetime_utc '2024-10-13 14:19:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 12gs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":210}' # _entry.id 12GS # _exptl.entry_id 12GS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 433.563 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-gamma-glutamyl-S-nonyl-L-cysteinylglycine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.47 _cell.angle_gamma 90 _cell.entry_id 12GS _cell.length_a 77.912 _cell.length_b 89.427 _cell.length_c 68.945 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 12GS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C19 H35 N3 O6 S' _chem_comp.formula_weight 433.563 _chem_comp.id 0HH _chem_comp.mon_nstd_flag . _chem_comp.name L-gamma-glutamyl-S-nonyl-L-cysteinylglycine _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA 0HH sing 1 n n N H 0HH sing 2 n n N H2 0HH sing 3 n n CA C 0HH sing 4 n n CA CB 0HH sing 5 n n CA HA 0HH sing 6 n n C O 0HH doub 7 n n C OXT 0HH sing 8 n n CB CG 0HH sing 9 n n CB HB2 0HH sing 10 n n CB HB3 0HH sing 11 n n CG CD 0HH sing 12 n n CG HG2 0HH sing 13 n n CG HG3 0HH sing 14 n n CD OE1 0HH doub 15 n n OXT HXT 0HH sing 16 n n N1 CA1 0HH sing 17 n n N1 H1 0HH sing 18 n n CA1 CB1 0HH sing 19 n n CA1 C1 0HH sing 20 n n CA1 HA1 0HH sing 21 n n CB1 SG 0HH sing 22 n n CB1 HB21 0HH sing 23 n n CB1 HB31 0HH sing 24 n n SG C11 0HH sing 25 n n C1 O1 0HH doub 26 n n C11 C2 0HH sing 27 n n C11 H11 0HH sing 28 n n C11 H12 0HH sing 29 n n C2 C3 0HH sing 30 n n C2 H21 0HH sing 31 n n C2 H22 0HH sing 32 n n C3 C4 0HH sing 33 n n C3 H31 0HH sing 34 n n C3 H32 0HH sing 35 n n C4 C5 0HH sing 36 n n C4 H41 0HH sing 37 n n C4 H42 0HH sing 38 n n C5 C6 0HH sing 39 n n C5 H51 0HH sing 40 n n C5 H52 0HH sing 41 n n C6 C7 0HH sing 42 n n C6 H61 0HH sing 43 n n C6 H62 0HH sing 44 n n C7 C8 0HH sing 45 n n C7 H71 0HH sing 46 n n C7 H72 0HH sing 47 n n C8 C9 0HH sing 48 n n C8 H81 0HH sing 49 n n C8 H82 0HH sing 50 n n C9 H91 0HH sing 51 n n C9 H92 0HH sing 52 n n C9 H93 0HH sing 53 n n N2 CA2 0HH sing 54 n n N2 H3 0HH sing 55 n n CA2 CC 0HH sing 56 n n CA2 HA2 0HH sing 57 n n CA2 HA3 0HH sing 58 n n CC O2 0HH doub 59 n n CC OXT1 0HH sing 60 n n OXT1 HXT1 0HH sing 61 n n CD N1 0HH sing 62 n n C1 N2 0HH sing 63 n n # _atom_sites.entry_id 12GS _atom_sites.fract_transf_matrix[1][1] 0.012835 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001683 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0HH A 1 210 1 0HH GLU . D 3 MES A 1 211 1 MES MES . E 2 0HH B 1 210 1 0HH GLU . F 3 MES B 1 211 2 MES MES . G 4 HOH A 1 212 2 HOH HOH . G 4 HOH A 2 213 4 HOH HOH . G 4 HOH A 3 214 5 HOH HOH . G 4 HOH A 4 215 8 HOH HOH . G 4 HOH A 5 216 10 HOH HOH . G 4 HOH A 6 217 12 HOH HOH . G 4 HOH A 7 218 13 HOH HOH . G 4 HOH A 8 219 15 HOH HOH . G 4 HOH A 9 220 16 HOH HOH . G 4 HOH A 10 221 18 HOH HOH . G 4 HOH A 11 222 24 HOH HOH . G 4 HOH A 12 223 25 HOH HOH . G 4 HOH A 13 224 28 HOH HOH . G 4 HOH A 14 225 31 HOH HOH . G 4 HOH A 15 226 32 HOH HOH . G 4 HOH A 16 227 33 HOH HOH . G 4 HOH A 17 228 34 HOH HOH . G 4 HOH A 18 229 36 HOH HOH . G 4 HOH A 19 230 37 HOH HOH . G 4 HOH A 20 231 38 HOH HOH . G 4 HOH A 21 232 43 HOH HOH . G 4 HOH A 22 233 46 HOH HOH . G 4 HOH A 23 234 47 HOH HOH . G 4 HOH A 24 235 51 HOH HOH . G 4 HOH A 25 236 55 HOH HOH . G 4 HOH A 26 237 56 HOH HOH . G 4 HOH A 27 238 57 HOH HOH . G 4 HOH A 28 239 58 HOH HOH . G 4 HOH A 29 240 60 HOH HOH . G 4 HOH A 30 241 61 HOH HOH . G 4 HOH A 31 242 62 HOH HOH . G 4 HOH A 32 243 65 HOH HOH . G 4 HOH A 33 244 66 HOH HOH . G 4 HOH A 34 245 69 HOH HOH . G 4 HOH A 35 246 71 HOH HOH . G 4 HOH A 36 247 81 HOH HOH . G 4 HOH A 37 248 84 HOH HOH . G 4 HOH A 38 249 85 HOH HOH . G 4 HOH A 39 250 87 HOH HOH . G 4 HOH A 40 251 88 HOH HOH . G 4 HOH A 41 252 90 HOH HOH . G 4 HOH A 42 253 94 HOH HOH . G 4 HOH A 43 254 95 HOH HOH . G 4 HOH A 44 255 96 HOH HOH . G 4 HOH A 45 256 97 HOH HOH . G 4 HOH A 46 257 99 HOH HOH . G 4 HOH A 47 258 100 HOH HOH . G 4 HOH A 48 259 108 HOH HOH . G 4 HOH A 49 260 112 HOH HOH . G 4 HOH A 50 261 113 HOH HOH . G 4 HOH A 51 262 117 HOH HOH . G 4 HOH A 52 263 118 HOH HOH . G 4 HOH A 53 264 120 HOH HOH . G 4 HOH A 54 265 122 HOH HOH . G 4 HOH A 55 266 123 HOH HOH . G 4 HOH A 56 267 124 HOH HOH . G 4 HOH A 57 268 127 HOH HOH . G 4 HOH A 58 269 130 HOH HOH . G 4 HOH A 59 270 134 HOH HOH . G 4 HOH A 60 271 137 HOH HOH . G 4 HOH A 61 272 139 HOH HOH . G 4 HOH A 62 273 141 HOH HOH . G 4 HOH A 63 274 145 HOH HOH . G 4 HOH A 64 275 146 HOH HOH . G 4 HOH A 65 276 147 HOH HOH . G 4 HOH A 66 277 151 HOH HOH . G 4 HOH A 67 278 153 HOH HOH . G 4 HOH A 68 279 155 HOH HOH . G 4 HOH A 69 280 157 HOH HOH . G 4 HOH A 70 281 159 HOH HOH . G 4 HOH A 71 282 160 HOH HOH . G 4 HOH A 72 283 163 HOH HOH . G 4 HOH A 73 284 164 HOH HOH . G 4 HOH A 74 285 166 HOH HOH . G 4 HOH A 75 286 168 HOH HOH . G 4 HOH A 76 287 169 HOH HOH . G 4 HOH A 77 288 174 HOH HOH . G 4 HOH A 78 289 179 HOH HOH . G 4 HOH A 79 290 1 HOH HOH . G 4 HOH A 80 291 9 HOH HOH . G 4 HOH A 81 292 82 HOH HOH . H 4 HOH B 1 212 6 HOH HOH . H 4 HOH B 2 213 7 HOH HOH . H 4 HOH B 3 214 11 HOH HOH . H 4 HOH B 4 215 14 HOH HOH . H 4 HOH B 5 216 17 HOH HOH . H 4 HOH B 6 217 19 HOH HOH . H 4 HOH B 7 218 20 HOH HOH . H 4 HOH B 8 219 21 HOH HOH . H 4 HOH B 9 220 22 HOH HOH . H 4 HOH B 10 221 23 HOH HOH . H 4 HOH B 11 222 26 HOH HOH . H 4 HOH B 12 223 27 HOH HOH . H 4 HOH B 13 224 29 HOH HOH . H 4 HOH B 14 225 30 HOH HOH . H 4 HOH B 15 226 35 HOH HOH . H 4 HOH B 16 227 39 HOH HOH . H 4 HOH B 17 228 40 HOH HOH . H 4 HOH B 18 229 41 HOH HOH . H 4 HOH B 19 230 42 HOH HOH . H 4 HOH B 20 231 44 HOH HOH . H 4 HOH B 21 232 45 HOH HOH . H 4 HOH B 22 233 48 HOH HOH . H 4 HOH B 23 234 49 HOH HOH . H 4 HOH B 24 235 50 HOH HOH . H 4 HOH B 25 236 52 HOH HOH . H 4 HOH B 26 237 53 HOH HOH . H 4 HOH B 27 238 54 HOH HOH . H 4 HOH B 28 239 59 HOH HOH . H 4 HOH B 29 240 63 HOH HOH . H 4 HOH B 30 241 64 HOH HOH . H 4 HOH B 31 242 67 HOH HOH . H 4 HOH B 32 243 68 HOH HOH . H 4 HOH B 33 244 70 HOH HOH . H 4 HOH B 34 245 72 HOH HOH . H 4 HOH B 35 246 73 HOH HOH . H 4 HOH B 36 247 74 HOH HOH . H 4 HOH B 37 248 75 HOH HOH . H 4 HOH B 38 249 76 HOH HOH . H 4 HOH B 39 250 78 HOH HOH . H 4 HOH B 40 251 79 HOH HOH . H 4 HOH B 41 252 80 HOH HOH . H 4 HOH B 42 253 86 HOH HOH . H 4 HOH B 43 254 89 HOH HOH . H 4 HOH B 44 255 91 HOH HOH . H 4 HOH B 45 256 92 HOH HOH . H 4 HOH B 46 257 93 HOH HOH . H 4 HOH B 47 258 98 HOH HOH . H 4 HOH B 48 259 101 HOH HOH . H 4 HOH B 49 260 102 HOH HOH . H 4 HOH B 50 261 103 HOH HOH . H 4 HOH B 51 262 104 HOH HOH . H 4 HOH B 52 263 105 HOH HOH . H 4 HOH B 53 264 106 HOH HOH . H 4 HOH B 54 265 107 HOH HOH . H 4 HOH B 55 266 109 HOH HOH . H 4 HOH B 56 267 110 HOH HOH . H 4 HOH B 57 268 111 HOH HOH . H 4 HOH B 58 269 114 HOH HOH . H 4 HOH B 59 270 115 HOH HOH . H 4 HOH B 60 271 116 HOH HOH . H 4 HOH B 61 272 119 HOH HOH . H 4 HOH B 62 273 121 HOH HOH . H 4 HOH B 63 274 125 HOH HOH . H 4 HOH B 64 275 126 HOH HOH . H 4 HOH B 65 276 128 HOH HOH . H 4 HOH B 66 277 129 HOH HOH . H 4 HOH B 67 278 131 HOH HOH . H 4 HOH B 68 279 132 HOH HOH . H 4 HOH B 69 280 133 HOH HOH . H 4 HOH B 70 281 135 HOH HOH . H 4 HOH B 71 282 136 HOH HOH . H 4 HOH B 72 283 138 HOH HOH . H 4 HOH B 73 284 140 HOH HOH . H 4 HOH B 74 285 142 HOH HOH . H 4 HOH B 75 286 143 HOH HOH . H 4 HOH B 76 287 144 HOH HOH . H 4 HOH B 77 288 148 HOH HOH . H 4 HOH B 78 289 149 HOH HOH . H 4 HOH B 79 290 150 HOH HOH . H 4 HOH B 80 291 152 HOH HOH . H 4 HOH B 81 292 154 HOH HOH . H 4 HOH B 82 293 156 HOH HOH . H 4 HOH B 83 294 158 HOH HOH . H 4 HOH B 84 295 161 HOH HOH . H 4 HOH B 85 296 162 HOH HOH . H 4 HOH B 86 297 165 HOH HOH . H 4 HOH B 87 298 167 HOH HOH . H 4 HOH B 88 299 170 HOH HOH . H 4 HOH B 89 300 171 HOH HOH . H 4 HOH B 90 301 172 HOH HOH . H 4 HOH B 91 302 173 HOH HOH . H 4 HOH B 92 303 175 HOH HOH . H 4 HOH B 93 304 176 HOH HOH . H 4 HOH B 94 305 177 HOH HOH . H 4 HOH B 95 306 178 HOH HOH . H 4 HOH B 96 307 180 HOH HOH . H 4 HOH B 97 308 181 HOH HOH . H 4 HOH B 98 309 3 HOH HOH . H 4 HOH B 99 310 77 HOH HOH . H 4 HOH B 100 311 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 0HH . . . E 2 16.85 12.896 9.769 1 3.26 ? N 0HH 210 B 1 HETATM 2 C CA 0HH . . . E 2 16.98 13.819 8.6 1 7.68 ? CA 0HH 210 B 1 HETATM 3 C C 0HH . . . E 2 17.826 15.023 8.991 1 4.95 ? C 0HH 210 B 1 HETATM 4 O O 0HH . . . E 2 18.395 15.67 8.091 1 6.01 ? O 0HH 210 B 1 HETATM 5 C CB 0HH . . . E 2 15.594 14.286 8.149 1 6.52 ? CB 0HH 210 B 1 HETATM 6 C CG 0HH . . . E 2 15.587 15.185 6.912 1 10.59 ? CG 0HH 210 B 1 HETATM 7 C CD 0HH . . . E 2 14.204 15.308 6.295 1 11.67 ? CD 0HH 210 B 1 HETATM 8 O OE1 0HH . . . E 2 13.191 15.107 6.974 1 6.97 ? OE1 0HH 210 B 1 HETATM 9 O OXT 0HH . . . E 2 17.913 15.299 10.206 1 8.33 ? OXT 0HH 210 B 1 HETATM 10 N N1 0HH . . . E 2 14.16 15.661 5.013 1 12.58 ? N1 0HH 210 B 1 HETATM 11 C CA1 0HH . . . E 2 12.895 15.771 4.301 1 11.2 ? CA1 0HH 210 B 1 HETATM 12 C CB1 0HH . . . E 2 12.274 17.158 4.482 1 13.35 ? CB1 0HH 210 B 1 HETATM 13 S SG 0HH . . . E 2 13.167 18.528 3.739 1 17.2 ? SG 0HH 210 B 1 HETATM 14 C C1 0HH . . . E 2 13.075 15.451 2.82 1 12.1 ? C1 0HH 210 B 1 HETATM 15 O O1 0HH . . . E 2 14.195 15.376 2.309 1 10.05 ? O1 0HH 210 B 1 HETATM 16 C C11 0HH . . . E 2 12.233 19.922 4.4 1 14.98 ? C11 0HH 210 B 1 HETATM 17 C C2 0HH . . . E 2 10.838 20.007 3.825 1 22.72 ? C2 0HH 210 B 1 HETATM 18 C C3 0HH . . . E 2 10.854 20.551 2.41 1 24.14 ? C3 0HH 210 B 1 HETATM 19 C C4 0HH . . . E 2 9.528 21.217 2.081 1 31.88 ? C4 0HH 210 B 1 HETATM 20 C C5 0HH . . . E 2 9.326 21.373 0.587 1 34.37 ? C5 0HH 210 B 1 HETATM 21 C C6 0HH . . . E 2 10.489 22.103 -0.071 1 41.45 ? C6 0HH 210 B 1 HETATM 22 C C7 0HH . . . E 2 10.405 23.613 0.131 1 39.92 ? C7 0HH 210 B 1 HETATM 23 C C8 0HH . . . E 2 9.641 24.29 -0.986 1 39.47 ? C8 0HH 210 B 1 HETATM 24 C C9 0HH . . . E 2 9.144 25.656 -0.549 1 43.88 ? C9 0HH 210 B 1 HETATM 25 N N2 0HH . . . E 2 11.961 15.24 2.133 1 13.96 ? N2 0HH 210 B 1 HETATM 26 C CA2 0HH . . . E 2 12.031 14.902 0.728 1 17.67 ? CA2 0HH 210 B 1 HETATM 27 C CC 0HH . . . E 2 11.762 13.425 0.535 1 16.81 ? CC 0HH 210 B 1 HETATM 28 O O2 0HH . . . E 2 11.579 13 -0.623 1 18.99 ? O2 0HH 210 B 1 HETATM 29 O OXT1 0HH . . . E 2 11.729 12.694 1.545 1 15.49 ? OXT1 0HH 210 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #