data_146D # _model_server_result.job_id toGNXilOZsun0iKOdAB2CA _model_server_result.datetime_utc '2025-03-06 05:30:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 146d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":9}' # _entry.id 146D # _exptl.entry_id 146D _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 388.411 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYROXY-7-METHYLANTHRACENE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 146D _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 146D _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 DDA DDA C1 O1 . O3 HO3 . sing 2 ? 3 2 1 DDL DDA C1 O1 . O3 HO3 . sing 3 ? 3 3 2 MDA DDL C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C DDA 1 C 1 DDA ? 8 DDA 2 n C DDA 2 C 2 DDA ? 7 DDA 3 n D DDA 1 D 1 DDA ? 10 DDA 3 n D DDL 2 D 2 DDL ? 11 DDL 3 n D MDA 3 D 3 MDA ? 12 MDA 2 n E DDA 1 E 1 DDA ? 2 DDA 2 n E DDA 2 E 2 DDA ? 1 DDA 3 n F DDA 1 F 1 DDA ? 4 DDA 3 n F DDL 2 F 2 DDL ? 5 DDL 3 n F MDA 3 F 3 MDA ? 6 MDA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 H C6 CRH . A CRH 9 1_555 C O1 DDA . C DDA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? covale ? covale2 H C2 CRH . A CRH 9 1_555 D O1 DDA . D DDA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale3 I C6 CRH . B CRH 3 1_555 E O1 DDA . E DDA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? covale ? covale4 I C2 CRH . B CRH 3 1_555 F O1 DDA . F DDA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale5 C O3 DDA . C DDA 1 1_555 C C1 DDA . C DDA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 sing covale ? covale6 D O3 DDA . D DDA 1 1_555 D C1 DDL . D DDL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 sing covale ? covale7 D O3 DDL . D DDL 2 1_555 D C1 MDA . D MDA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 sing covale ? covale8 E O3 DDA . E DDA 1 1_555 E C1 DDA . E DDA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 sing covale ? covale9 F O3 DDA . F DDA 1 1_555 F C1 DDL . F DDL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 sing covale ? covale10 F O3 DDL . F DDL 2 1_555 F C1 MDA . F MDA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 sing metalc ? metalc1 H O9 CRH . A CRH 9 1_555 G MG MG . A MG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc2 H O1 CRH . A CRH 9 1_555 G MG MG . A MG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc3 G MG MG . A MG 13 1_555 I O9 CRH . B CRH 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc4 G MG MG . A MG 13 1_555 I O1 CRH . B CRH 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? hydrog WATSON-CRICK hydrog1 A N3 DT 1 A DT 1 1_555 B N1 DA 6 B DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A O4 DT 1 A DT 1 1_555 B N6 DA 6 B DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 DC 2 A DC 2 1_555 B N1 DG 5 B DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N4 DC 2 A DC 2 1_555 B O6 DG 5 B DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O2 DC 2 A DC 2 1_555 B N2 DG 5 B DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DG 3 A DG 3 1_555 B N3 DC 4 B DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N2 DG 3 A DG 3 1_555 B O2 DC 4 B DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O6 DG 3 A DG 3 1_555 B N4 DC 4 B DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DC 4 A DC 4 1_555 B N1 DG 3 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N4 DC 4 A DC 4 1_555 B O6 DG 3 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O2 DC 4 A DC 4 1_555 B N2 DG 3 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DG 5 A DG 5 1_555 B N3 DC 2 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N2 DG 5 A DG 5 1_555 B O2 DC 2 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O6 DG 5 A DG 5 1_555 B N4 DC 2 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DA 6 A DA 6 1_555 B N3 DT 1 B DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 DA 6 A DA 6 1_555 B O4 DT 1 B DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C21 H24 O7' _chem_comp.formula_weight 388.411 _chem_comp.id CRH _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYROXY-7-METHYLANTHRACENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CRH sing 1 n n C1 C13 CRH sing 2 n n C1 O1 CRH doub 3 n n C2 C3 CRH sing 4 n n C2 H21 CRH sing 5 n n C2 H22 CRH sing 6 n n C3 C4 CRH sing 7 n n C3 C1' CRH sing 8 n n C3 H3 CRH sing 9 n n C4 C14 CRH sing 10 n n C4 H41 CRH sing 11 n n C4 H42 CRH sing 12 n n C5 C6 CRH doub 13 n y C5 C11 CRH sing 14 n y C5 H5 CRH sing 15 n n C6 C7 CRH sing 16 n y C6 H6 CRH sing 17 n n C7 C8 CRH doub 18 n y C7 C15 CRH sing 19 n n C8 C12 CRH sing 20 n y C8 O8 CRH sing 21 n n C9 C12 CRH doub 22 n y C9 C13 CRH sing 23 n y C9 O9 CRH sing 24 n n C10 C11 CRH doub 25 n y C10 C14 CRH sing 26 n y C10 H10 CRH sing 27 n n C11 C12 CRH sing 28 n y C13 C14 CRH doub 29 n y C15 H151 CRH sing 30 n n C15 H152 CRH sing 31 n n C15 H153 CRH sing 32 n n O8 HO8 CRH sing 33 n n O9 HO9 CRH sing 34 n n C1' C2' CRH sing 35 n n C1' O1' CRH sing 36 n n C1' H1' CRH sing 37 n n C2' C3' CRH sing 38 n n C2' O2' CRH doub 39 n n C3' C4' CRH sing 40 n n C3' O3' CRH sing 41 n n C3' H3' CRH sing 42 n n C4' C4M CRH sing 43 n n C4' O4' CRH sing 44 n n C4' H4' CRH sing 45 n n C1M O1' CRH sing 46 n n C1M "H1'1" CRH sing 47 n n C1M "H1'2" CRH sing 48 n n C1M "H1'3" CRH sing 49 n n C4M "H4'1" CRH sing 50 n n C4M "H4'2" CRH sing 51 n n C4M "H4'3" CRH sing 52 n n O3' HO3 CRH sing 53 n n O4' HO4 CRH sing 54 n n # _atom_sites.entry_id 146D _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 MG A 1 13 13 MG MG . H 5 CRH A 1 9 9 CRH CRH . I 5 CRH B 1 3 3 CRH CRH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CRH . . . H 5 0.714 -1.731 19.82 1 0.22 ? C1 CRH 9 A 1 HETATM 2 C C2 CRH . . . H 5 0.281 -2.464 21.092 1 0.22 ? C2 CRH 9 A 1 HETATM 3 C C3 CRH . . . H 5 1.51 -2.84 21.926 1 0.21 ? C3 CRH 9 A 1 HETATM 4 C C4 CRH . . . H 5 2.425 -1.642 22.125 1 0.22 ? C4 CRH 9 A 1 HETATM 5 C C5 CRH . . . H 5 5.589 0.998 19.604 1 0.26 ? C5 CRH 9 A 1 HETATM 6 C C6 CRH . . . H 5 6.032 1.676 18.494 1 0.28 ? C6 CRH 9 A 1 HETATM 7 C C7 CRH . . . H 5 5.236 1.689 17.365 1 0.28 ? C7 CRH 9 A 1 HETATM 8 C C8 CRH . . . H 5 4.02 1.02 17.377 1 0.26 ? C8 CRH 9 A 1 HETATM 9 C C9 CRH . . . H 5 2.338 -0.372 18.543 1 0.25 ? C9 CRH 9 A 1 HETATM 10 C C10 CRH . . . H 5 3.987 -0.329 20.743 1 0.23 ? C10 CRH 9 A 1 HETATM 11 C C11 CRH . . . H 5 4.377 0.337 19.613 1 0.24 ? C11 CRH 9 A 1 HETATM 12 C C12 CRH . . . H 5 3.56 0.326 18.5 1 0.24 ? C12 CRH 9 A 1 HETATM 13 C C13 CRH . . . H 5 1.932 -1.05 19.708 1 0.23 ? C13 CRH 9 A 1 HETATM 14 C C14 CRH . . . H 5 2.796 -1.01 20.797 1 0.22 ? C14 CRH 9 A 1 HETATM 15 C C15 CRH . . . H 5 5.796 2.31 16.089 1 0.31 ? C15 CRH 9 A 1 HETATM 16 O O1 CRH . . . H 5 -0.051 -1.747 18.863 1 0.25 ? O1 CRH 9 A 1 HETATM 17 O O8 CRH . . . H 5 3.262 1.05 16.224 1 0.29 ? O8 CRH 9 A 1 HETATM 18 O O9 CRH . . . H 5 1.608 -0.43 17.351 1 0.32 ? O9 CRH 9 A 1 HETATM 19 C C1' CRH . . . H 5 1.034 -3.503 23.229 1 0.25 ? C1' CRH 9 A 1 HETATM 20 C C2' CRH . . . H 5 2.191 -3.937 24.135 1 0.31 ? C2' CRH 9 A 1 HETATM 21 C C3' CRH . . . H 5 2.998 -5.217 23.906 1 0.36 ? C3' CRH 9 A 1 HETATM 22 C C4' CRH . . . H 5 2.979 -5.875 22.502 1 0.49 ? C4' CRH 9 A 1 HETATM 23 C C1M CRH . . . H 5 -0.777 -3.397 24.869 1 0.5 ? C1M CRH 9 A 1 HETATM 24 C C4M CRH . . . H 5 3.853 -7.15 22.457 1 0.66 ? C4M CRH 9 A 1 HETATM 25 O O1' CRH . . . H 5 0.118 -2.715 23.994 1 0.33 ? O1' CRH 9 A 1 HETATM 26 O O2' CRH . . . H 5 2.493 -3.234 25.1 1 0.47 ? O2' CRH 9 A 1 HETATM 27 O O3' CRH . . . H 5 2.575 -6.209 24.835 1 0.62 ? O3' CRH 9 A 1 HETATM 28 O O4' CRH . . . H 5 1.652 -6.31 22.228 1 0.66 ? O4' CRH 9 A 1 HETATM 29 H H21 CRH . . . H 5 -0.343 -1.811 21.682 1 0.26 ? H21 CRH 9 A 1 HETATM 30 H H3 CRH . . . H 5 2.067 -3.568 21.355 1 0.22 ? H3 CRH 9 A 1 HETATM 31 H H41 CRH . . . H 5 3.312 -1.944 22.662 1 0.22 ? H41 CRH 9 A 1 HETATM 32 H H42 CRH . . . H 5 2.047 -0.863 22.77 1 0.25 ? H42 CRH 9 A 1 HETATM 33 H H5 CRH . . . H 5 6.229 0.992 20.473 1 0.26 ? H5 CRH 9 A 1 HETATM 34 H H10 CRH . . . H 5 4.627 -0.299 21.613 1 0.24 ? H10 CRH 9 A 1 HETATM 35 H H151 CRH . . . H 5 6.452 3.116 16.38 1 0.31 ? H151 CRH 9 A 1 HETATM 36 H H152 CRH . . . H 5 6.335 1.548 15.546 1 0.31 ? H152 CRH 9 A 1 HETATM 37 H H153 CRH . . . H 5 4.981 2.701 15.498 1 0.35 ? H153 CRH 9 A 1 HETATM 38 H HO8 CRH . . . H 5 3.727 1.468 15.498 1 0.3 ? HO8 CRH 9 A 1 HETATM 39 H H1' CRH . . . H 5 0.482 -4.378 22.921 1 0.28 ? H1' CRH 9 A 1 HETATM 40 H H3' CRH . . . H 5 4.028 -4.94 24.078 1 0.52 ? H3' CRH 9 A 1 HETATM 41 H H4' CRH . . . H 5 3.321 -5.152 21.777 1 0.62 ? H4' CRH 9 A 1 HETATM 42 H "H1'1" CRH . . . H 5 -1.084 -2.707 25.64 1 0.68 ? "H1'1" CRH 9 A 1 HETATM 43 H "H1'2" CRH . . . H 5 -1.638 -3.741 24.314 1 0.91 ? "H1'2" CRH 9 A 1 HETATM 44 H "H1'3" CRH . . . H 5 -0.279 -4.223 25.355 1 0.82 ? "H1'3" CRH 9 A 1 HETATM 45 H "H4'1" CRH . . . H 5 3.842 -7.631 21.49 1 0.84 ? "H4'1" CRH 9 A 1 HETATM 46 H "H4'2" CRH . . . H 5 4.876 -6.906 22.7 1 0.73 ? "H4'2" CRH 9 A 1 HETATM 47 H "H4'3" CRH . . . H 5 3.49 -7.859 23.187 1 0.71 ? "H4'3" CRH 9 A 1 HETATM 48 H HO3 CRH . . . H 5 1.665 -6.428 24.62 1 0.71 ? HO3 CRH 9 A 1 HETATM 49 H HO4 CRH . . . H 5 1.601 -6.547 21.299 1 0.9 ? HO4 CRH 9 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 608 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 49 #