data_195D # _model_server_result.job_id qskBneNZvDEdqbYIWCIWXg _model_server_result.datetime_utc '2024-11-12 21:22:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 195d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":25}' # _entry.id 195D # _exptl.entry_id 195D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.464 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NETROPSIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 195D _cell.length_a 25.49 _cell.length_b 40.87 _cell.length_c 67.019 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 195D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DT 5 A DT 5 1_555 B N1 DA 8 B DA 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O4 DT 5 A DT 5 1_555 B N6 DA 8 B DA 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 DT 6 A DT 6 1_555 B N1 DA 7 B DA 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O4 DT 6 A DT 6 1_555 B N6 DA 7 B DA 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 DA 7 A DA 7 1_555 B N3 DT 6 B DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N6 DA 7 A DA 7 1_555 B O4 DT 6 B DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 DA 8 A DA 8 1_555 B N3 DT 5 B DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N6 DA 8 A DA 8 1_555 B O4 DT 5 B DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 DC 9 A DC 9 1_555 B N1 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N4 DC 9 A DC 9 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O2 DC 9 A DC 9 1_555 B N2 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DG 10 A DG 10 1_555 B N3 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N2 DG 10 A DG 10 1_555 B O2 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O6 DG 10 A DG 10 1_555 B N4 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N3 DC 11 A DC 11 1_555 B N1 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N4 DC 11 A DC 11 1_555 B O6 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O2 DC 11 A DC 11 1_555 B N2 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N1 DG 12 A DG 12 1_555 B N3 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N2 DG 12 A DG 12 1_555 B O2 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O6 DG 12 A DG 12 1_555 B N4 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C18 H26 N10 O3' _chem_comp.formula_weight 430.464 _chem_comp.id NT _chem_comp.mon_nstd_flag . _chem_comp.name NETROPSIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 NT doub 152 n n C1 N2 NT sing 153 n n C1 N3 NT sing 154 n n N1 HN1 NT sing 155 n n N2 HN21 NT sing 156 n n N2 HN22 NT sing 157 n n N3 C2 NT sing 158 n n N3 HN3 NT sing 159 n n C2 C3 NT sing 160 n n C2 H21 NT sing 161 n n C2 H22 NT sing 162 n n C3 O1 NT doub 163 n n C3 N4 NT sing 164 n n N4 C4 NT sing 165 n n N4 HN4 NT sing 166 n n C4 C5 NT sing 167 n y C4 C7 NT doub 168 n y C5 C6 NT doub 169 n y C5 H5 NT sing 170 n n C6 N5 NT sing 171 n y C6 C9 NT sing 172 n n N5 C8 NT sing 173 n n N5 C7 NT sing 174 n y C8 H81 NT sing 175 n n C8 H82 NT sing 176 n n C8 H83 NT sing 177 n n C7 H7 NT sing 178 n n C9 O2 NT doub 179 n n C9 N6 NT sing 180 n n N6 C10 NT sing 181 n n N6 HN6 NT sing 182 n n C10 C11 NT sing 183 n y C10 C13 NT doub 184 n y C11 C12 NT doub 185 n y C11 H11 NT sing 186 n n C12 N7 NT sing 187 n y C12 C15 NT sing 188 n n N7 C14 NT sing 189 n n N7 C13 NT sing 190 n y C14 H141 NT sing 191 n n C14 H142 NT sing 192 n n C14 H143 NT sing 193 n n C13 H13 NT sing 194 n n C15 O3 NT doub 195 n n C15 N8 NT sing 196 n n N8 C16 NT sing 197 n n N8 HN8 NT sing 198 n n C16 C17 NT sing 199 n n C16 H161 NT sing 200 n n C16 H162 NT sing 201 n n C17 C18 NT sing 202 n n C17 H171 NT sing 203 n n C17 H172 NT sing 204 n n C18 N9 NT doub 205 n n C18 N10 NT sing 206 n n N9 HN9 NT sing 207 n n N10 HN01 NT sing 208 n n N10 HN02 NT sing 209 n n # _atom_sites.entry_id 195D _atom_sites.fract_transf_matrix[1][1] 0.039231 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014921 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NT B 1 25 25 NT NT . D 3 HOH A 1 26 26 HOH HOH . D 3 HOH A 2 27 27 HOH HOH . D 3 HOH A 3 28 28 HOH HOH . D 3 HOH A 4 29 29 HOH HOH . D 3 HOH A 5 30 30 HOH HOH . D 3 HOH A 6 31 31 HOH HOH . D 3 HOH A 7 33 33 HOH HOH . D 3 HOH A 8 34 34 HOH HOH . D 3 HOH A 9 35 35 HOH HOH . D 3 HOH A 10 37 37 HOH HOH . D 3 HOH A 11 38 38 HOH HOH . D 3 HOH A 12 41 41 HOH HOH . D 3 HOH A 13 47 47 HOH HOH . D 3 HOH A 14 49 49 HOH HOH . D 3 HOH A 15 50 50 HOH HOH . D 3 HOH A 16 53 53 HOH HOH . D 3 HOH A 17 54 54 HOH HOH . D 3 HOH A 18 55 55 HOH HOH . D 3 HOH A 19 56 56 HOH HOH . D 3 HOH A 20 58 58 HOH HOH . D 3 HOH A 21 60 60 HOH HOH . D 3 HOH A 22 61 61 HOH HOH . D 3 HOH A 23 65 65 HOH HOH . D 3 HOH A 24 68 68 HOH HOH . D 3 HOH A 25 69 69 HOH HOH . D 3 HOH A 26 71 71 HOH HOH . D 3 HOH A 27 75 75 HOH HOH . D 3 HOH A 28 82 82 HOH HOH . D 3 HOH A 29 85 85 HOH HOH . D 3 HOH A 30 87 87 HOH HOH . D 3 HOH A 31 91 91 HOH HOH . D 3 HOH A 32 92 92 HOH HOH . D 3 HOH A 33 95 95 HOH HOH . D 3 HOH A 34 98 98 HOH HOH . D 3 HOH A 35 100 100 HOH HOH . D 3 HOH A 36 103 103 HOH HOH . D 3 HOH A 37 104 104 HOH HOH . D 3 HOH A 38 106 106 HOH HOH . D 3 HOH A 39 107 107 HOH HOH . D 3 HOH A 40 110 110 HOH HOH . D 3 HOH A 41 112 112 HOH HOH . E 3 HOH B 1 32 32 HOH HOH . E 3 HOH B 2 36 36 HOH HOH . E 3 HOH B 3 39 39 HOH HOH . E 3 HOH B 4 40 40 HOH HOH . E 3 HOH B 5 42 42 HOH HOH . E 3 HOH B 6 43 43 HOH HOH . E 3 HOH B 7 44 44 HOH HOH . E 3 HOH B 8 45 45 HOH HOH . E 3 HOH B 9 46 46 HOH HOH . E 3 HOH B 10 48 48 HOH HOH . E 3 HOH B 11 51 51 HOH HOH . E 3 HOH B 12 52 52 HOH HOH . E 3 HOH B 13 57 57 HOH HOH . E 3 HOH B 14 59 59 HOH HOH . E 3 HOH B 15 62 62 HOH HOH . E 3 HOH B 16 63 63 HOH HOH . E 3 HOH B 17 64 64 HOH HOH . E 3 HOH B 18 66 66 HOH HOH . E 3 HOH B 19 67 67 HOH HOH . E 3 HOH B 20 70 70 HOH HOH . E 3 HOH B 21 72 72 HOH HOH . E 3 HOH B 22 73 73 HOH HOH . E 3 HOH B 23 74 74 HOH HOH . E 3 HOH B 24 76 76 HOH HOH . E 3 HOH B 25 77 77 HOH HOH . E 3 HOH B 26 78 78 HOH HOH . E 3 HOH B 27 79 79 HOH HOH . E 3 HOH B 28 80 80 HOH HOH . E 3 HOH B 29 81 81 HOH HOH . E 3 HOH B 30 83 83 HOH HOH . E 3 HOH B 31 84 84 HOH HOH . E 3 HOH B 32 86 86 HOH HOH . E 3 HOH B 33 88 88 HOH HOH . E 3 HOH B 34 89 89 HOH HOH . E 3 HOH B 35 90 90 HOH HOH . E 3 HOH B 36 93 93 HOH HOH . E 3 HOH B 37 94 94 HOH HOH . E 3 HOH B 38 96 96 HOH HOH . E 3 HOH B 39 97 97 HOH HOH . E 3 HOH B 40 99 99 HOH HOH . E 3 HOH B 41 101 101 HOH HOH . E 3 HOH B 42 102 102 HOH HOH . E 3 HOH B 43 105 105 HOH HOH . E 3 HOH B 44 108 108 HOH HOH . E 3 HOH B 45 109 109 HOH HOH . E 3 HOH B 46 111 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NT . . . C 2 14.853 25.195 2.033 1 48.96 ? C1 NT 25 B 1 HETATM 2 N N1 NT . . . C 2 15.841 24.317 2.138 1 47.59 ? N1 NT 25 B 1 HETATM 3 N N2 NT . . . C 2 14.842 26.039 1.01 1 50.61 ? N2 NT 25 B 1 HETATM 4 N N3 NT . . . C 2 14.005 25.392 3.045 1 49.09 ? N3 NT 25 B 1 HETATM 5 C C2 NT . . . C 2 13.246 24.295 3.629 1 46.32 ? C2 NT 25 B 1 HETATM 6 C C3 NT . . . C 2 12.088 24.776 4.489 1 44.55 ? C3 NT 25 B 1 HETATM 7 O O1 NT . . . C 2 11.538 25.874 4.28 1 44.28 ? O1 NT 25 B 1 HETATM 8 N N4 NT . . . C 2 11.8 23.88 5.458 1 42.23 ? N4 NT 25 B 1 HETATM 9 C C4 NT . . . C 2 10.685 24.005 6.229 1 39.21 ? C4 NT 25 B 1 HETATM 10 C C5 NT . . . C 2 10.278 23.148 7.236 1 38.85 ? C5 NT 25 B 1 HETATM 11 C C6 NT . . . C 2 9.046 23.615 7.739 1 39.49 ? C6 NT 25 B 1 HETATM 12 N N5 NT . . . C 2 8.736 24.785 7.036 1 39.07 ? N5 NT 25 B 1 HETATM 13 C C8 NT . . . C 2 7.523 25.705 7.227 1 38.53 ? C8 NT 25 B 1 HETATM 14 C C7 NT . . . C 2 9.683 24.973 6.162 1 39.06 ? C7 NT 25 B 1 HETATM 15 C C9 NT . . . C 2 8.366 23.126 8.889 1 40.85 ? C9 NT 25 B 1 HETATM 16 O O2 NT . . . C 2 7.199 23.455 9.144 1 42.01 ? O2 NT 25 B 1 HETATM 17 N N6 NT . . . C 2 9.069 22.541 9.901 1 39.71 ? N6 NT 25 B 1 HETATM 18 C C10 NT . . . C 2 8.507 21.859 10.945 1 37.69 ? C10 NT 25 B 1 HETATM 19 C C11 NT . . . C 2 9.23 21.182 11.911 1 37.63 ? C11 NT 25 B 1 HETATM 20 C C12 NT . . . C 2 8.325 20.476 12.712 1 37.78 ? C12 NT 25 B 1 HETATM 21 N N7 NT . . . C 2 7.029 20.762 12.228 1 36.36 ? N7 NT 25 B 1 HETATM 22 C C14 NT . . . C 2 5.698 20.427 12.869 1 35.67 ? C14 NT 25 B 1 HETATM 23 C C13 NT . . . C 2 7.162 21.55 11.201 1 36.96 ? C13 NT 25 B 1 HETATM 24 C C15 NT . . . C 2 8.701 19.731 13.863 1 38.65 ? C15 NT 25 B 1 HETATM 25 O O3 NT . . . C 2 7.931 18.967 14.468 1 38.12 ? O3 NT 25 B 1 HETATM 26 N N8 NT . . . C 2 9.907 19.89 14.424 1 38.01 ? N8 NT 25 B 1 HETATM 27 C C16 NT . . . C 2 10.322 19.204 15.62 1 38.18 ? C16 NT 25 B 1 HETATM 28 C C17 NT . . . C 2 10.928 17.87 15.328 1 39.14 ? C17 NT 25 B 1 HETATM 29 C C18 NT . . . C 2 11.577 17.329 16.576 1 41.35 ? C18 NT 25 B 1 HETATM 30 N N9 NT . . . C 2 10.998 16.377 17.302 1 43.19 ? N9 NT 25 B 1 HETATM 31 N N10 NT . . . C 2 12.605 18.023 17.048 1 40.96 ? N10 NT 25 B 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #