data_1A14 # _model_server_result.job_id bmMBY5X-VzBEIL95WcQCjQ _model_server_result.datetime_utc '2025-01-02 23:34:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a14 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":475}' # _entry.id 1A14 # _exptl.entry_id 1A14 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1A14 _cell.length_a 165.3 _cell.length_b 165.3 _cell.length_c 182.4 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A14 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 165.3 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 165.3 0 0 4 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 165.3 165.3 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 4 5 4 MAN MAN C1 O1 . O2 HO2 . sing 5 ? 4 6 5 MAN MAN C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 A 1 NAG N 200 NAG 4 n D NAG 2 A 2 NAG N 200 NAG 4 n D BMA 3 A 3 BMA N 200 MAN 4 n D MAN 4 A 4 MAN N 200 MAN 4 n D MAN 5 A 5 MAN N 200 MAN 4 n D MAN 6 A 6 MAN N 200 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 N CYS 92 1_555 A SG CYS 337 N CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 43 N CYS 124 1_555 A SG CYS 48 N CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf3 A SG CYS 95 N CYS 175 1_555 A SG CYS 113 N CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf4 A SG CYS 103 N CYS 183 1_555 A SG CYS 150 N CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf5 A SG CYS 152 N CYS 232 1_555 A SG CYS 157 N CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf6 A SG CYS 198 N CYS 278 1_555 A SG CYS 211 N CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf7 A SG CYS 200 N CYS 280 1_555 A SG CYS 209 N CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf8 A SG CYS 238 N CYS 318 1_555 A SG CYS 256 N CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 A SG CYS 341 N CYS 421 1_555 A SG CYS 367 N CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 C SG CYS 23 L CYS 23 1_555 C SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 A ND2 ASN 5 N ASN 86 1_555 G C1 NAG . N NAG 477 1_555 ? ? ? A ? ? ? ? ? ? ? ? 1.536 ? covale ? covale2 A ND2 ASN 65 N ASN 146 1_555 F C1 NAG . N NAG 476 1_555 ? ? ? A ? ? ? ? ? ? ? ? 1.45 ? covale ? covale3 A ND2 ASN 120 N ASN 200 1_555 D C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale4 D O4 NAG . A NAG 1 1_555 D C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 D O4 NAG . A NAG 2 1_555 D C1 BMA . A BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale6 D O3 BMA . A BMA 3 1_555 D C1 MAN . A MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? covale ? covale7 D O2 MAN . A MAN 4 1_555 D C1 MAN . A MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale8 D O2 MAN . A MAN 5 1_555 D C1 MAN . A MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? metalc ? metalc1 A O ASP 213 N ASP 293 1_555 H CA CA . N CA 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.064 ? metalc ? metalc2 A O GLY 217 N GLY 297 1_555 H CA CA . N CA 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc3 A OD2 ASP 244 N ASP 324 1_555 H CA CA . N CA 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.4 ? metalc ? metalc4 A O ASN 266 N ASN 347 1_555 H CA CA . N CA 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 240 n n C1 O1 MAN sing 241 n n C1 O5 MAN sing 242 n n C1 H1 MAN sing 243 n n C2 C3 MAN sing 244 n n C2 O2 MAN sing 245 n n C2 H2 MAN sing 246 n n C3 C4 MAN sing 247 n n C3 O3 MAN sing 248 n n C3 H3 MAN sing 249 n n C4 C5 MAN sing 250 n n C4 O4 MAN sing 251 n n C4 H4 MAN sing 252 n n C5 C6 MAN sing 253 n n C5 O5 MAN sing 254 n n C5 H5 MAN sing 255 n n C6 O6 MAN sing 256 n n C6 H61 MAN sing 257 n n C6 H62 MAN sing 258 n n O1 HO1 MAN sing 259 n n O2 HO2 MAN sing 260 n n O3 HO3 MAN sing 261 n n O4 HO4 MAN sing 262 n n O6 HO6 MAN sing 263 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1A14 _atom_sites.fract_transf_matrix[1][1] 0.00605 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00605 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005482 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 MAN N 1 475 200 MAN MAN G F 6 NAG N 1 476 146 NAG NAG A G 6 NAG N 1 477 86 NAG NAG A H 7 CA N 1 478 469 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . G E 5 41.396 107.718 44.33 1 39.21 ? C1 MAN 475 N 1 HETATM 2 C C2 MAN . . G E 5 41.13 109.155 43.644 1 45.69 ? C2 MAN 475 N 1 HETATM 3 C C3 MAN . . G E 5 41.347 110.266 44.659 1 38.13 ? C3 MAN 475 N 1 HETATM 4 C C4 MAN . . G E 5 40.579 109.888 45.932 1 25.84 ? C4 MAN 475 N 1 HETATM 5 C C5 MAN . . G E 5 40.113 108.444 46.16 1 15.02 ? C5 MAN 475 N 1 HETATM 6 C C6 MAN . . G E 5 38.856 107.817 45.404 1 16.95 ? C6 MAN 475 N 1 HETATM 7 O O2 MAN . . G E 5 39.847 109.426 43.049 1 32.14 ? O2 MAN 475 N 1 HETATM 8 O O3 MAN . . G E 5 40.939 111.541 44.184 1 51.86 ? O3 MAN 475 N 1 HETATM 9 O O4 MAN . . G E 5 41.564 110.045 46.852 1 9.86 ? O4 MAN 475 N 1 HETATM 10 O O5 MAN . . G E 5 41.177 107.664 45.824 1 16.15 ? O5 MAN 475 N 1 HETATM 11 O O6 MAN . . G E 5 39.193 106.636 44.539 1 9.74 ? O6 MAN 475 N 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #