data_1A2B # _model_server_result.job_id QdLmo2TGZxHrj00raJy0Fw _model_server_result.datetime_utc '2024-11-27 03:08:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a2b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":538}' # _entry.id 1A2B # _exptl.entry_id 1A2B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.246 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1A2B _cell.length_a 62.02 _cell.length_b 74.78 _cell.length_c 50.52 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A2B _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 20 A THR 19 1_555 B MG MG . A MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc2 A OG1 THR 38 A THR 37 1_555 B MG MG . A MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc3 C O2G GSP . A GSP 538 1_555 B MG MG . A MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc4 C O2B GSP . A GSP 538 1_555 B MG MG . A MG 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc5 B MG MG . A MG 550 1_555 D O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc6 B MG MG . A MG 550 1_555 D O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? # _chem_comp.formula 'C10 H16 N5 O13 P3 S' _chem_comp.formula_weight 539.246 _chem_comp.id GSP _chem_comp.mon_nstd_flag . _chem_comp.name "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O3B GSP sing 129 n n PG S1G GSP doub 130 n n PG O2G GSP sing 131 n n PG O3G GSP sing 132 n n O3B PB GSP sing 133 n n O2G HOG2 GSP sing 134 n n O3G HOG3 GSP sing 135 n n PB O1B GSP doub 136 n n PB O2B GSP sing 137 n n PB O3A GSP sing 138 n n O2B HOB2 GSP sing 139 n n PA O1A GSP doub 140 n n PA O2A GSP sing 141 n n PA O3A GSP sing 142 n n PA O5' GSP sing 143 n n O2A HOA2 GSP sing 144 n n O5' C5' GSP sing 145 n n C5' C4' GSP sing 146 n n C5' "H5'1" GSP sing 147 n n C5' "H5'2" GSP sing 148 n n C4' O4' GSP sing 149 n n C4' C3' GSP sing 150 n n C4' H4' GSP sing 151 n n O4' C1' GSP sing 152 n n C3' O3' GSP sing 153 n n C3' C2' GSP sing 154 n n C3' H3' GSP sing 155 n n O3' HO3' GSP sing 156 n n C2' O2' GSP sing 157 n n C2' C1' GSP sing 158 n n C2' H2' GSP sing 159 n n O2' HO2' GSP sing 160 n n C1' N9 GSP sing 161 n n C1' H1' GSP sing 162 n n N9 C8 GSP sing 163 n y N9 C4 GSP sing 164 n y C8 N7 GSP doub 165 n y C8 H8 GSP sing 166 n n N7 C5 GSP sing 167 n y C5 C6 GSP sing 168 n n C5 C4 GSP doub 169 n y C6 O6 GSP doub 170 n n C6 N1 GSP sing 171 n n N1 C2 GSP sing 172 n n N1 HN1 GSP sing 173 n n C2 N2 GSP sing 174 n n C2 N3 GSP doub 175 n n N2 HN21 GSP sing 176 n n N2 HN22 GSP sing 177 n n N3 C4 GSP sing 178 n n # _atom_sites.entry_id 1A2B _atom_sites.fract_transf_matrix[1][1] 0.016124 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013373 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019794 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 550 550 MG MG . C 3 GSP A 1 538 538 GSP GSP . D 4 HOH A 1 601 601 HOH HOH . D 4 HOH A 2 602 602 HOH HOH . D 4 HOH A 3 603 603 HOH HOH . D 4 HOH A 4 604 604 HOH HOH . D 4 HOH A 5 605 605 HOH HOH . D 4 HOH A 6 606 606 HOH HOH . D 4 HOH A 7 607 607 HOH HOH . D 4 HOH A 8 608 608 HOH HOH . D 4 HOH A 9 609 609 HOH HOH . D 4 HOH A 10 610 610 HOH HOH . D 4 HOH A 11 611 611 HOH HOH . D 4 HOH A 12 612 612 HOH HOH . D 4 HOH A 13 613 613 HOH HOH . D 4 HOH A 14 614 614 HOH HOH . D 4 HOH A 15 615 615 HOH HOH . D 4 HOH A 16 616 616 HOH HOH . D 4 HOH A 17 617 617 HOH HOH . D 4 HOH A 18 618 618 HOH HOH . D 4 HOH A 19 619 619 HOH HOH . D 4 HOH A 20 620 620 HOH HOH . D 4 HOH A 21 621 621 HOH HOH . D 4 HOH A 22 622 622 HOH HOH . D 4 HOH A 23 623 623 HOH HOH . D 4 HOH A 24 624 624 HOH HOH . D 4 HOH A 25 625 625 HOH HOH . D 4 HOH A 26 626 626 HOH HOH . D 4 HOH A 27 627 627 HOH HOH . D 4 HOH A 28 628 628 HOH HOH . D 4 HOH A 29 629 629 HOH HOH . D 4 HOH A 30 630 630 HOH HOH . D 4 HOH A 31 631 631 HOH HOH . D 4 HOH A 32 632 632 HOH HOH . D 4 HOH A 33 633 633 HOH HOH . D 4 HOH A 34 634 634 HOH HOH . D 4 HOH A 35 635 635 HOH HOH . D 4 HOH A 36 636 636 HOH HOH . D 4 HOH A 37 637 637 HOH HOH . D 4 HOH A 38 638 638 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GSP . . . C 3 8.414 29.914 26.76 1 39.52 ? PG GSP 538 A 1 HETATM 2 O O3B GSP . . . C 3 9.749 29.098 27.43 1 44.15 ? O3B GSP 538 A 1 HETATM 3 S S1G GSP . . . C 3 7.359 30.348 28.29 1 37.23 ? S1G GSP 538 A 1 HETATM 4 O O2G GSP . . . C 3 8.968 31.125 26.082 1 31.59 ? O2G GSP 538 A 1 HETATM 5 O O3G GSP . . . C 3 7.836 28.893 25.821 1 32.62 ? O3G GSP 538 A 1 HETATM 6 P PB GSP . . . C 3 11.162 28.658 26.802 1 33.59 ? PB GSP 538 A 1 HETATM 7 O O1B GSP . . . C 3 11.035 27.247 26.481 1 33.83 ? O1B GSP 538 A 1 HETATM 8 O O2B GSP . . . C 3 11.602 29.536 25.648 1 2 ? O2B GSP 538 A 1 HETATM 9 P PA GSP . . . C 3 13.495 29.762 28.283 1 20.33 ? PA GSP 538 A 1 HETATM 10 O O1A GSP . . . C 3 14.404 29.52 27.149 1 24.55 ? O1A GSP 538 A 1 HETATM 11 O O2A GSP . . . C 3 12.987 31.153 28.469 1 18.85 ? O2A GSP 538 A 1 HETATM 12 O O3A GSP . . . C 3 12.244 28.733 28.013 1 25.44 ? O3A GSP 538 A 1 HETATM 13 O O5' GSP . . . C 3 14.15 29.213 29.671 1 13.81 ? O5' GSP 538 A 1 HETATM 14 C C5' GSP . . . C 3 13.448 28.581 30.725 1 22.41 ? C5' GSP 538 A 1 HETATM 15 C C4' GSP . . . C 3 14.216 28.624 32.016 1 33.47 ? C4' GSP 538 A 1 HETATM 16 O O4' GSP . . . C 3 15.288 27.627 32.037 1 37.98 ? O4' GSP 538 A 1 HETATM 17 C C3' GSP . . . C 3 14.913 29.975 32.175 1 37.74 ? C3' GSP 538 A 1 HETATM 18 O O3' GSP . . . C 3 14.96 30.382 33.55 1 29.97 ? O3' GSP 538 A 1 HETATM 19 C C2' GSP . . . C 3 16.349 29.731 31.655 1 40.05 ? C2' GSP 538 A 1 HETATM 20 O O2' GSP . . . C 3 17.316 30.589 32.223 1 42.99 ? O2' GSP 538 A 1 HETATM 21 C C1' GSP . . . C 3 16.617 28.258 32.038 1 41.64 ? C1' GSP 538 A 1 HETATM 22 N N9 GSP . . . C 3 17.46 27.56 31.028 1 32.95 ? N9 GSP 538 A 1 HETATM 23 C C8 GSP . . . C 3 17.487 27.697 29.645 1 29.47 ? C8 GSP 538 A 1 HETATM 24 N N7 GSP . . . C 3 18.329 26.934 29.042 1 18.41 ? N7 GSP 538 A 1 HETATM 25 C C5 GSP . . . C 3 18.923 26.225 30.089 1 24.25 ? C5 GSP 538 A 1 HETATM 26 C C6 GSP . . . C 3 19.962 25.189 30.06 1 22.76 ? C6 GSP 538 A 1 HETATM 27 O O6 GSP . . . C 3 20.561 24.697 29.091 1 29.55 ? O6 GSP 538 A 1 HETATM 28 N N1 GSP . . . C 3 20.269 24.735 31.348 1 14.38 ? N1 GSP 538 A 1 HETATM 29 C C2 GSP . . . C 3 19.673 25.204 32.501 1 19.45 ? C2 GSP 538 A 1 HETATM 30 N N2 GSP . . . C 3 20.048 24.704 33.663 1 12.26 ? N2 GSP 538 A 1 HETATM 31 N N3 GSP . . . C 3 18.718 26.152 32.522 1 13.65 ? N3 GSP 538 A 1 HETATM 32 C C4 GSP . . . C 3 18.394 26.61 31.289 1 24.16 ? C4 GSP 538 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 977 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 32 #