data_1A2T
#
_model_server_result.job_id            7xNH9OUtSgA2w98C117luQ 
_model_server_result.datetime_utc      '2024-11-23 12:46:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1a2t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":151}' 
#
_entry.id    1A2T 
#
_exptl.entry_id    1A2T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              402.188 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "THYMIDINE-3',5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1A2T 
_cell.length_a            48.2 
_cell.length_b            48.2 
_cell.length_c            63 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1A2T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C THR 22 A THR 22 1_555 A N CME 23 A CME 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C CME 23 A CME 23 1_555 A N LYS 24 A LYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
metalc ? metalc1 A OD2 ASP 21 A ASP 21 1_555 B CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc2 A OD1 ASP 40 A ASP 40 1_555 B CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc3 A O THR 41 A THR 41 1_555 B CA CA . A CA 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? 
metalc ? metalc4 B CA CA . A CA 150 1_555 C O4P THP . A THP 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc5 B CA CA . A CA 150 1_555 D O HOH . A HOH 211 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc6 B CA CA . A CA 150 1_555 D O HOH . A HOH 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.53 ? 
metalc ? metalc7 B CA CA . A CA 150 1_555 D O HOH . A HOH 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
#
_chem_comp.formula           'C10 H16 N2 O11 P2' 
_chem_comp.formula_weight    402.188 
_chem_comp.id                THP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "THYMIDINE-3',5'-DIPHOSPHATE" 
_chem_comp.type              'dna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P2 O4P THP doub 298 n n 
P2 O5P THP sing 299 n n 
P2 O6P THP sing 300 n n 
P2 O5' THP sing 301 n n 
O5P HOP5 THP sing 302 n n 
O6P HOP6 THP sing 303 n n 
P1 O1P THP doub 304 n n 
P1 O2P THP sing 305 n n 
P1 O3P THP sing 306 n n 
P1 O3' THP sing 307 n n 
O2P HOP2 THP sing 308 n n 
O3P HOP3 THP sing 309 n n 
O5' C5' THP sing 310 n n 
C5' C4' THP sing 311 n n 
C5' "H5'1" THP sing 312 n n 
C5' "H5'2" THP sing 313 n n 
C4' O4' THP sing 314 n n 
C4' C3' THP sing 315 n n 
C4' H4' THP sing 316 n n 
O4' C1' THP sing 317 n n 
C3' O3' THP sing 318 n n 
C3' C2' THP sing 319 n n 
C3' H3' THP sing 320 n n 
C2' C1' THP sing 321 n n 
C2' "H2'1" THP sing 322 n n 
C2' "H2'2" THP sing 323 n n 
C1' N1 THP sing 324 n n 
C1' H1' THP sing 325 n n 
N1 C2 THP sing 326 n n 
N1 C6 THP sing 327 n n 
C2 O2 THP doub 328 n n 
C2 N3 THP sing 329 n n 
N3 C4 THP sing 330 n n 
N3 H3 THP sing 331 n n 
C4 O4 THP doub 332 n n 
C4 C5 THP sing 333 n n 
C5 C5M THP sing 334 n n 
C5 C6 THP doub 335 n n 
C5M H51 THP sing 336 n n 
C5M H52 THP sing 337 n n 
C5M H53 THP sing 338 n n 
C6 H6 THP sing 339 n n 
#
_atom_sites.entry_id                     1A2T 
_atom_sites.fract_transf_matrix[1][1]    0.020747 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020747 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015873 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 150 142 CA CA . 
C 3 THP A 1 151 143 THP THP . 
D 4 HOH A 1 201 201 HOH HOH . 
D 4 HOH A 2 202 202 HOH HOH . 
D 4 HOH A 3 203 203 HOH HOH . 
D 4 HOH A 4 204 204 HOH HOH . 
D 4 HOH A 5 205 205 HOH HOH . 
D 4 HOH A 6 206 206 HOH HOH . 
D 4 HOH A 7 207 207 HOH HOH . 
D 4 HOH A 8 208 208 HOH HOH . 
D 4 HOH A 9 209 209 HOH HOH . 
D 4 HOH A 10 210 210 HOH HOH . 
D 4 HOH A 11 211 211 HOH HOH . 
D 4 HOH A 12 213 213 HOH HOH . 
D 4 HOH A 13 214 214 HOH HOH . 
D 4 HOH A 14 215 215 HOH HOH . 
D 4 HOH A 15 216 216 HOH HOH . 
D 4 HOH A 16 217 217 HOH HOH . 
D 4 HOH A 17 218 218 HOH HOH . 
D 4 HOH A 18 219 219 HOH HOH . 
D 4 HOH A 19 220 220 HOH HOH . 
D 4 HOH A 20 221 221 HOH HOH . 
D 4 HOH A 21 222 222 HOH HOH . 
D 4 HOH A 22 223 223 HOH HOH . 
D 4 HOH A 23 224 224 HOH HOH . 
D 4 HOH A 24 225 225 HOH HOH . 
D 4 HOH A 25 226 226 HOH HOH . 
D 4 HOH A 26 227 227 HOH HOH . 
D 4 HOH A 27 228 228 HOH HOH . 
D 4 HOH A 28 229 229 HOH HOH . 
D 4 HOH A 29 231 231 HOH HOH . 
D 4 HOH A 30 232 232 HOH HOH . 
D 4 HOH A 31 233 233 HOH HOH . 
D 4 HOH A 32 234 234 HOH HOH . 
D 4 HOH A 33 235 235 HOH HOH . 
D 4 HOH A 34 236 236 HOH HOH . 
D 4 HOH A 35 237 237 HOH HOH . 
D 4 HOH A 36 238 238 HOH HOH . 
D 4 HOH A 37 239 239 HOH HOH . 
D 4 HOH A 38 241 241 HOH HOH . 
D 4 HOH A 39 242 242 HOH HOH . 
D 4 HOH A 40 243 243 HOH HOH . 
D 4 HOH A 41 245 245 HOH HOH . 
D 4 HOH A 42 246 246 HOH HOH . 
D 4 HOH A 43 247 247 HOH HOH . 
D 4 HOH A 44 248 248 HOH HOH . 
D 4 HOH A 45 250 250 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P2 THP . . . C 3 6.331 13.975 20.338 1 36.04 ? P2 THP 151 A 1 
HETATM 2 O O4P THP . . . C 3 5.39 14.012 19.152 1 36.42 ? O4P THP 151 A 1 
HETATM 3 O O5P THP . . . C 3 7.578 14.752 20.07 1 33.16 ? O5P THP 151 A 1 
HETATM 4 O O6P THP . . . C 3 6.523 12.642 20.915 1 37.02 ? O6P THP 151 A 1 
HETATM 5 P P1 THP . . . C 3 5.015 11.768 26.113 1 38 ? P1 THP 151 A 1 
HETATM 6 O O1P THP . . . C 3 5.129 11.593 27.561 1 46.21 ? O1P THP 151 A 1 
HETATM 7 O O2P THP . . . C 3 6.286 11.672 25.409 1 39 ? O2P THP 151 A 1 
HETATM 8 O O3P THP . . . C 3 3.907 11.076 25.471 1 46.07 ? O3P THP 151 A 1 
HETATM 9 O O5' THP . . . C 3 5.581 14.725 21.518 1 36.05 ? O5' THP 151 A 1 
HETATM 10 C C5' THP . . . C 3 4.576 14.169 22.378 1 36.38 ? C5' THP 151 A 1 
HETATM 11 C C4' THP . . . C 3 5.071 14.261 23.817 1 35.64 ? C4' THP 151 A 1 
HETATM 12 O O4' THP . . . C 3 5.336 15.619 24.201 1 33.82 ? O4' THP 151 A 1 
HETATM 13 C C3' THP . . . C 3 3.992 13.847 24.752 1 35.68 ? C3' THP 151 A 1 
HETATM 14 O O3' THP . . . C 3 4.594 13.327 25.97 1 40.65 ? O3' THP 151 A 1 
HETATM 15 C C2' THP . . . C 3 3.234 15.133 24.963 1 31.31 ? C2' THP 151 A 1 
HETATM 16 C C1' THP . . . C 3 4.324 16.123 25.092 1 31.59 ? C1' THP 151 A 1 
HETATM 17 N N1 THP . . . C 3 3.871 17.469 24.702 1 31.96 ? N1 THP 151 A 1 
HETATM 18 C C2 THP . . . C 3 3.554 18.327 25.708 1 33.14 ? C2 THP 151 A 1 
HETATM 19 O O2 THP . . . C 3 3.846 18.186 26.873 1 36.44 ? O2 THP 151 A 1 
HETATM 20 N N3 THP . . . C 3 2.934 19.442 25.369 1 34 ? N3 THP 151 A 1 
HETATM 21 C C4 THP . . . C 3 2.717 19.877 24.081 1 35.78 ? C4 THP 151 A 1 
HETATM 22 O O4 THP . . . C 3 2.126 20.944 23.894 1 35.88 ? O4 THP 151 A 1 
HETATM 23 C C5 THP . . . C 3 3.211 19.011 23.037 1 33.08 ? C5 THP 151 A 1 
HETATM 24 C C5M THP . . . C 3 2.973 19.436 21.566 1 28.14 ? C5M THP 151 A 1 
HETATM 25 C C6 THP . . . C 3 3.786 17.85 23.385 1 31.62 ? C6 THP 151 A 1 
HETATM 26 H H3 THP . . . C 3 2.582 20.01 26.125 1 0 ? H3 THP 151 A 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           228 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           26 
#