data_1A3W # _model_server_result.job_id y98Nml_cNRbYCj4rpj2AlA _model_server_result.datetime_utc '2024-11-21 16:21:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a3w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1007}' # _entry.id 1A3W # _exptl.entry_id 1A3W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.116 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 1,6-di-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.3 _cell.angle_gamma 90 _cell.entry_id 1A3W _cell.length_a 109.4 _cell.length_b 102.7 _cell.length_c 110.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A3W _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 67.318312 0 102.605758 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 51 A ASN 51 1_555 F K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? metalc ? metalc2 A OG SER 53 A SER 53 1_555 F K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.305 ? metalc ? metalc3 A OD1 ASP 84 A ASP 84 1_555 F K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc4 A O THR 85 A THR 85 1_555 F K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.031 ? metalc ? metalc5 A OE2 GLU 242 A GLU 242 1_555 E MN MN . A MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc6 A OD2 ASP 266 A ASP 266 1_555 E MN MN . A MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc7 E MN MN . A MN 1001 1_555 C O1P PGA . A PGA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc8 E MN MN . A MN 1001 1_555 C O1 PGA . A PGA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc9 F K K . A K 1002 1_555 C O4P PGA . A PGA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.286 ? metalc ? metalc10 B OD1 ASN 51 B ASN 51 1_555 J K K . B K 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? metalc ? metalc11 B OG SER 53 B SER 53 1_555 J K K . B K 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.394 ? metalc ? metalc12 B O ASP 84 B ASP 84 1_555 J K K . B K 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.672 ? metalc ? metalc13 B OD1 ASP 84 B ASP 84 1_555 J K K . B K 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc14 B O THR 85 B THR 85 1_555 J K K . B K 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc15 B OE2 GLU 242 B GLU 242 1_555 I MN MN . B MN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc16 B OD2 ASP 266 B ASP 266 1_555 I MN MN . B MN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc17 I MN MN . B MN 1003 1_555 G O1P PGA . B PGA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc18 I MN MN . B MN 1003 1_555 G O1 PGA . B PGA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc19 J K K . B K 1004 1_555 G O4P PGA . B PGA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.202 ? # _chem_comp.formula 'C6 H14 O12 P2' _chem_comp.formula_weight 340.116 _chem_comp.id FBP _chem_comp.mon_nstd_flag n _chem_comp.name 1,6-di-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms BETA-FRUCTOSE-1,6-DIPHOSPHATE;FRUCTOSE-1,6-BISPHOSPHATE;1,6-di-O-phosphono-beta-D-fructose;1,6-di-O-phosphono-D-fructose;1,6-di-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P FBP doub 83 n n P1 O2P FBP sing 84 n n P1 O3P FBP sing 85 n n P1 O1 FBP sing 86 n n O2P HOP2 FBP sing 87 n n O3P HOP3 FBP sing 88 n n O1 C1 FBP sing 89 n n C1 C2 FBP sing 90 n n C1 H11 FBP sing 91 n n C1 H12 FBP sing 92 n n C2 O2 FBP sing 93 n n C2 C3 FBP sing 94 n n C2 O5 FBP sing 95 n n O2 HO2 FBP sing 96 n n C3 O3 FBP sing 97 n n C3 C4 FBP sing 98 n n C3 H3 FBP sing 99 n n O3 HO3 FBP sing 100 n n C4 O4 FBP sing 101 n n C4 C5 FBP sing 102 n n C4 H4 FBP sing 103 n n O4 HO4 FBP sing 104 n n C5 O5 FBP sing 105 n n C5 C6 FBP sing 106 n n C5 H5 FBP sing 107 n n C6 O6 FBP sing 108 n n C6 H61 FBP sing 109 n n C6 H62 FBP sing 110 n n O6 P2 FBP sing 111 n n P2 O4P FBP doub 112 n n P2 O5P FBP sing 113 n n P2 O6P FBP sing 114 n n O5P HOP5 FBP sing 115 n n O6P HOP6 FBP sing 116 n n # _pdbx_chem_comp_identifier.comp_id FBP _pdbx_chem_comp_identifier.identifier b-D-Fruf1PO36PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1A3W _atom_sites.fract_transf_matrix[1][1] 0.009141 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003749 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009737 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009746 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PGA A 1 1005 1005 PGA PGA . D 3 FBP A 1 1007 1007 FBP FBP . E 4 MN A 1 1001 1001 MN MN . F 5 K A 1 1002 1002 K K . G 2 PGA B 1 1006 1006 PGA PGA . H 3 FBP B 1 1008 1008 FBP FBP . I 4 MN B 1 1003 1003 MN MN . J 5 K B 1 1004 1004 K K . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 FBP . . . D 3 34.544 23.304 37.93 1 20 ? P1 FBP 1007 A 1 HETATM 2 O O1P FBP . . . D 3 35.72 23.905 37.251 1 20 ? O1P FBP 1007 A 1 HETATM 3 O O2P FBP . . . D 3 33.531 22.902 36.917 1 20 ? O2P FBP 1007 A 1 HETATM 4 O O3P FBP . . . D 3 33.966 24.246 38.924 1 20 ? O3P FBP 1007 A 1 HETATM 5 O O1 FBP . . . D 3 35.036 22.01 38.71 1 20 ? O1 FBP 1007 A 1 HETATM 6 C C1 FBP . . . D 3 34.159 21.245 39.543 1 20 ? C1 FBP 1007 A 1 HETATM 7 C C2 FBP . . . D 3 34.73 19.823 39.644 1 20 ? C2 FBP 1007 A 1 HETATM 8 O O2 FBP . . . D 3 33.884 19.008 40.463 1 20 ? O2 FBP 1007 A 1 HETATM 9 C C3 FBP . . . D 3 36.16 19.841 40.207 1 20 ? C3 FBP 1007 A 1 HETATM 10 O O3 FBP . . . D 3 36.227 19.88 41.61 1 20 ? O3 FBP 1007 A 1 HETATM 11 C C4 FBP . . . D 3 36.801 18.59 39.639 1 20 ? C4 FBP 1007 A 1 HETATM 12 O O4 FBP . . . D 3 38.195 18.802 39.414 1 20 ? O4 FBP 1007 A 1 HETATM 13 C C5 FBP . . . D 3 36.078 18.479 38.273 1 20 ? C5 FBP 1007 A 1 HETATM 14 O O5 FBP . . . D 3 34.841 19.228 38.32 1 20 ? O5 FBP 1007 A 1 HETATM 15 C C6 FBP . . . D 3 35.747 17.04 37.904 1 20 ? C6 FBP 1007 A 1 HETATM 16 O O6 FBP . . . D 3 36.829 16.514 37.113 1 20 ? O6 FBP 1007 A 1 HETATM 17 P P2 FBP . . . D 3 36.49 15.499 35.919 1 20 ? P2 FBP 1007 A 1 HETATM 18 O O4P FBP . . . D 3 35.778 14.332 36.484 1 20 ? O4P FBP 1007 A 1 HETATM 19 O O5P FBP . . . D 3 35.644 16.195 34.934 1 20 ? O5P FBP 1007 A 1 HETATM 20 O O6P FBP . . . D 3 37.748 15.077 35.261 1 20 ? O6P FBP 1007 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 20 #