data_1A46 # _model_server_result.job_id A8Dvz6gZ6nVIGCtA185vSA _model_server_result.datetime_utc '2024-12-27 00:38:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a46 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":548}' # _entry.id 1A46 # _exptl.entry_id 1A46 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.12 _cell.angle_gamma 90 _cell.entry_id 1A46 _cell.length_a 71.3 _cell.length_b 73.09 _cell.length_c 73.82 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A46 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 B OG SER 205 H SER 195 1_555 F C 00K . H 00K 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? covale ? covale2 C C GLU 10 I GLU 362 1_555 C N TYS 11 I TYS 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 C C TYS 11 I TYS 363 1_555 C N LEU 12 I LEU 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? metalc ? metalc1 B O LYS 174 H LYS 169 1_555 E NA NA . H NA 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc2 B O THR 177 H THR 172 1_555 E NA NA . H NA 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc3 B O PHE 215 H PHE 204 4_546 E NA NA . H NA 549 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc4 B O ARG 233 H ARG 221 1_555 D NA NA . H NA 548 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc5 B O LYS 236 H LYS 224 1_555 D NA NA . H NA 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc6 H O HOH . H HOH 416 1_555 D NA NA . H NA 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc7 H O HOH . H HOH 443 1_555 D NA NA . H NA 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc8 H O HOH . H HOH 468 1_555 E NA NA . H NA 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc9 H O HOH . H HOH 529 1_555 E NA NA . H NA 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc10 H O HOH . H HOH 530 1_555 D NA NA . H NA 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc11 H O HOH . H HOH 531 1_555 D NA NA . H NA 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1A46 _atom_sites.fract_transf_matrix[1][1] 0.014025 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002757 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013682 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA H 1 548 548 NA NA . E 4 NA H 1 549 549 NA NA . F 5 00K H 1 372 372 00K 00K . G 6 HOH L 1 393 393 HOH HOH . G 6 HOH L 2 420 420 HOH HOH . G 6 HOH L 3 426 426 HOH HOH . G 6 HOH L 4 451 451 HOH HOH . G 6 HOH L 5 459 459 HOH HOH . G 6 HOH L 6 477 477 HOH HOH . G 6 HOH L 7 486 486 HOH HOH . G 6 HOH L 8 488 488 HOH HOH . G 6 HOH L 9 491 491 HOH HOH . G 6 HOH L 10 495 495 HOH HOH . G 6 HOH L 11 507 507 HOH HOH . G 6 HOH L 12 513 513 HOH HOH . G 6 HOH L 13 527 527 HOH HOH . G 6 HOH L 14 539 539 HOH HOH . G 6 HOH L 15 540 540 HOH HOH . H 6 HOH H 1 381 381 HOH HOH . H 6 HOH H 2 382 382 HOH HOH . H 6 HOH H 3 383 383 HOH HOH . H 6 HOH H 4 384 384 HOH HOH . H 6 HOH H 5 385 385 HOH HOH . H 6 HOH H 6 386 386 HOH HOH . H 6 HOH H 7 387 387 HOH HOH . H 6 HOH H 8 388 388 HOH HOH . H 6 HOH H 9 389 389 HOH HOH . H 6 HOH H 10 390 390 HOH HOH . H 6 HOH H 11 391 391 HOH HOH . H 6 HOH H 12 392 392 HOH HOH . H 6 HOH H 13 394 394 HOH HOH . H 6 HOH H 14 395 395 HOH HOH . H 6 HOH H 15 396 396 HOH HOH . H 6 HOH H 16 397 397 HOH HOH . H 6 HOH H 17 398 398 HOH HOH . H 6 HOH H 18 399 399 HOH HOH . H 6 HOH H 19 401 401 HOH HOH . H 6 HOH H 20 402 402 HOH HOH . H 6 HOH H 21 403 403 HOH HOH . H 6 HOH H 22 404 404 HOH HOH . H 6 HOH H 23 405 405 HOH HOH . H 6 HOH H 24 406 406 HOH HOH . H 6 HOH H 25 407 407 HOH HOH . H 6 HOH H 26 408 408 HOH HOH . H 6 HOH H 27 409 409 HOH HOH . H 6 HOH H 28 410 410 HOH HOH . H 6 HOH H 29 411 411 HOH HOH . H 6 HOH H 30 412 412 HOH HOH . H 6 HOH H 31 413 413 HOH HOH . H 6 HOH H 32 414 414 HOH HOH . H 6 HOH H 33 415 415 HOH HOH . H 6 HOH H 34 416 416 HOH HOH . H 6 HOH H 35 417 417 HOH HOH . H 6 HOH H 36 418 418 HOH HOH . H 6 HOH H 37 419 419 HOH HOH . H 6 HOH H 38 421 421 HOH HOH . H 6 HOH H 39 422 422 HOH HOH . H 6 HOH H 40 423 423 HOH HOH . H 6 HOH H 41 424 424 HOH HOH . H 6 HOH H 42 425 425 HOH HOH . H 6 HOH H 43 427 427 HOH HOH . H 6 HOH H 44 428 428 HOH HOH . H 6 HOH H 45 429 429 HOH HOH . H 6 HOH H 46 431 431 HOH HOH . H 6 HOH H 47 432 432 HOH HOH . H 6 HOH H 48 433 433 HOH HOH . H 6 HOH H 49 434 434 HOH HOH . H 6 HOH H 50 435 435 HOH HOH . H 6 HOH H 51 436 436 HOH HOH . H 6 HOH H 52 438 438 HOH HOH . H 6 HOH H 53 439 439 HOH HOH . H 6 HOH H 54 440 440 HOH HOH . H 6 HOH H 55 441 441 HOH HOH . H 6 HOH H 56 442 442 HOH HOH . H 6 HOH H 57 443 443 HOH HOH . H 6 HOH H 58 444 444 HOH HOH . H 6 HOH H 59 445 445 HOH HOH . H 6 HOH H 60 446 446 HOH HOH . H 6 HOH H 61 447 447 HOH HOH . H 6 HOH H 62 448 448 HOH HOH . H 6 HOH H 63 449 449 HOH HOH . H 6 HOH H 64 450 450 HOH HOH . H 6 HOH H 65 452 452 HOH HOH . H 6 HOH H 66 453 453 HOH HOH . H 6 HOH H 67 454 454 HOH HOH . H 6 HOH H 68 455 455 HOH HOH . H 6 HOH H 69 456 456 HOH HOH . H 6 HOH H 70 457 457 HOH HOH . H 6 HOH H 71 458 458 HOH HOH . H 6 HOH H 72 460 460 HOH HOH . H 6 HOH H 73 461 461 HOH HOH . H 6 HOH H 74 462 462 HOH HOH . H 6 HOH H 75 463 463 HOH HOH . H 6 HOH H 76 464 464 HOH HOH . H 6 HOH H 77 465 465 HOH HOH . H 6 HOH H 78 466 466 HOH HOH . H 6 HOH H 79 467 467 HOH HOH . H 6 HOH H 80 468 468 HOH HOH . H 6 HOH H 81 469 469 HOH HOH . H 6 HOH H 82 470 470 HOH HOH . H 6 HOH H 83 471 471 HOH HOH . H 6 HOH H 84 472 472 HOH HOH . H 6 HOH H 85 473 473 HOH HOH . H 6 HOH H 86 474 474 HOH HOH . H 6 HOH H 87 475 475 HOH HOH . H 6 HOH H 88 476 476 HOH HOH . H 6 HOH H 89 478 478 HOH HOH . H 6 HOH H 90 479 479 HOH HOH . H 6 HOH H 91 480 480 HOH HOH . H 6 HOH H 92 481 481 HOH HOH . H 6 HOH H 93 482 482 HOH HOH . H 6 HOH H 94 483 483 HOH HOH . H 6 HOH H 95 484 484 HOH HOH . H 6 HOH H 96 485 485 HOH HOH . H 6 HOH H 97 487 487 HOH HOH . H 6 HOH H 98 489 489 HOH HOH . H 6 HOH H 99 490 490 HOH HOH . H 6 HOH H 100 492 492 HOH HOH . H 6 HOH H 101 493 493 HOH HOH . H 6 HOH H 102 494 494 HOH HOH . H 6 HOH H 103 496 496 HOH HOH . H 6 HOH H 104 497 497 HOH HOH . H 6 HOH H 105 498 498 HOH HOH . H 6 HOH H 106 499 499 HOH HOH . H 6 HOH H 107 500 500 HOH HOH . H 6 HOH H 108 501 501 HOH HOH . H 6 HOH H 109 502 502 HOH HOH . H 6 HOH H 110 503 503 HOH HOH . H 6 HOH H 111 504 504 HOH HOH . H 6 HOH H 112 505 505 HOH HOH . H 6 HOH H 113 506 506 HOH HOH . H 6 HOH H 114 508 508 HOH HOH . H 6 HOH H 115 509 509 HOH HOH . H 6 HOH H 116 510 510 HOH HOH . H 6 HOH H 117 511 511 HOH HOH . H 6 HOH H 118 512 512 HOH HOH . H 6 HOH H 119 514 514 HOH HOH . H 6 HOH H 120 515 515 HOH HOH . H 6 HOH H 121 516 516 HOH HOH . H 6 HOH H 122 517 517 HOH HOH . H 6 HOH H 123 518 518 HOH HOH . H 6 HOH H 124 519 519 HOH HOH . H 6 HOH H 125 520 520 HOH HOH . H 6 HOH H 126 521 521 HOH HOH . H 6 HOH H 127 523 523 HOH HOH . H 6 HOH H 128 524 524 HOH HOH . H 6 HOH H 129 525 525 HOH HOH . H 6 HOH H 130 526 526 HOH HOH . H 6 HOH H 131 528 528 HOH HOH . H 6 HOH H 132 529 529 HOH HOH . H 6 HOH H 133 530 530 HOH HOH . H 6 HOH H 134 531 531 HOH HOH . H 6 HOH H 135 532 532 HOH HOH . H 6 HOH H 136 533 533 HOH HOH . H 6 HOH H 137 534 534 HOH HOH . H 6 HOH H 138 535 535 HOH HOH . H 6 HOH H 139 536 536 HOH HOH . H 6 HOH H 140 537 537 HOH HOH . H 6 HOH H 141 538 538 HOH HOH . H 6 HOH H 142 541 541 HOH HOH . H 6 HOH H 143 542 542 HOH HOH . H 6 HOH H 144 543 543 HOH HOH . H 6 HOH H 145 544 544 HOH HOH . H 6 HOH H 146 545 545 HOH HOH . H 6 HOH H 147 546 546 HOH HOH . H 6 HOH H 148 547 547 HOH HOH . I 6 HOH I 1 437 437 HOH HOH . I 6 HOH I 2 522 522 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 5.205 _atom_site.Cartn_y -14.157 _atom_site.Cartn_z 31.004 _atom_site.occupancy 0.82 _atom_site.B_iso_or_equiv 24.43 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 548 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #