data_1A47 # _model_server_result.job_id U2n52utNl_uY0yoAykKCug _model_server_result.datetime_utc '2024-10-19 16:38:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":686}' # _entry.id 1A47 # _exptl.entry_id 1A47 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1A47 _cell.length_a 73.996 _cell.length_b 97.789 _cell.length_c 116.263 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GLC GLC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 GLC GLC C1 O1 . O4 HO4 . sing 3 ? 3 2 1 GLC GLC C1 O1 . O4 HO4 . sing 4 ? 3 3 2 G6D GLC C1 O1 . O4 HO4 . sing 5 ? 4 2 1 GLC GLC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC A 687 GLC 2 n B GLC 2 B 2 GLC A 688 GLC 2 n B GLC 3 B 3 GLC A 689 GLC 3 n C GLC 1 C 1 GLC A 691 GLC 3 n C GLC 2 C 2 GLC A 692 GLC 3 n C G6D 3 C 3 G6D A 693 G6D 4 n D GLC 1 D 1 GLC A 695 GLC 4 n D GLC 2 D 2 GLC A 696 GLC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E N1 ADH . A ADH 694 1_555 C C4 G6D . C G6D 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale2 E C4 ADH . A ADH 694 1_555 D O1 GLC . D GLC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 B O4 GLC . B GLC 1 1_555 B C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 sing covale ? covale4 B O4 GLC . B GLC 2 1_555 B C1 GLC . B GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 sing covale ? covale5 C O4 GLC . C GLC 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 sing covale ? covale6 C O4 GLC . C GLC 2 1_555 C C1 G6D . C G6D 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 sing covale ? covale7 D O4 GLC . D GLC 1 1_555 D C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 sing metalc ? metalc1 A OD1 ASP 27 A ASP 27 1_555 G CA CA . A CA 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc2 A O ASN 29 A ASN 29 1_555 G CA CA . A CA 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc3 A OD1 ASN 32 A ASN 32 1_555 G CA CA . A CA 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc4 A OD1 ASN 33 A ASN 33 1_555 G CA CA . A CA 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc5 A O GLY 51 A GLY 51 1_555 G CA CA . A CA 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc6 A OD2 ASP 53 A ASP 53 1_555 G CA CA . A CA 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc7 A OD1 ASN 140 A ASN 140 1_555 F CA CA . A CA 685 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc8 A O ILE 191 A ILE 191 1_555 F CA CA . A CA 685 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc9 A OD1 ASP 200 A ASP 200 1_555 F CA CA . A CA 685 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc10 A OD2 ASP 200 A ASP 200 1_555 F CA CA . A CA 685 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc11 A O HIS 234 A HIS 234 1_555 F CA CA . A CA 685 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc12 F CA CA . A CA 685 1_555 H O HOH . A HOH 838 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc13 F CA CA . A CA 685 1_555 H O HOH . A HOH 839 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc14 F CA CA . A CA 685 1_555 H O HOH . A HOH 882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc15 G CA CA . A CA 686 1_555 H O HOH . A HOH 840 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1A47 _atom_sites.fract_transf_matrix[1][1] 0.013514 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010226 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008601 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 ADH A 1 694 694 ADH ACI . F 6 CA A 1 685 685 CA CA . G 6 CA A 1 686 686 CA CA . H 7 HOH A 1 698 698 HOH HOH . H 7 HOH A 2 699 699 HOH HOH . H 7 HOH A 3 700 700 HOH HOH . H 7 HOH A 4 701 701 HOH HOH . H 7 HOH A 5 702 702 HOH HOH . H 7 HOH A 6 703 703 HOH HOH . H 7 HOH A 7 704 704 HOH HOH . H 7 HOH A 8 705 705 HOH HOH . H 7 HOH A 9 706 706 HOH HOH . H 7 HOH A 10 707 707 HOH HOH . H 7 HOH A 11 708 708 HOH HOH . H 7 HOH A 12 709 709 HOH HOH . H 7 HOH A 13 710 710 HOH HOH . H 7 HOH A 14 711 711 HOH HOH . H 7 HOH A 15 712 712 HOH HOH . H 7 HOH A 16 713 713 HOH HOH . H 7 HOH A 17 714 714 HOH HOH . H 7 HOH A 18 715 715 HOH HOH . H 7 HOH A 19 716 716 HOH HOH . H 7 HOH A 20 717 717 HOH HOH . H 7 HOH A 21 718 718 HOH HOH . H 7 HOH A 22 719 719 HOH HOH . H 7 HOH A 23 720 720 HOH HOH . H 7 HOH A 24 721 721 HOH HOH . H 7 HOH A 25 722 722 HOH HOH . H 7 HOH A 26 723 723 HOH HOH . H 7 HOH A 27 724 724 HOH HOH . H 7 HOH A 28 725 725 HOH HOH . H 7 HOH A 29 726 726 HOH HOH . H 7 HOH A 30 727 727 HOH HOH . H 7 HOH A 31 728 728 HOH HOH . H 7 HOH A 32 729 729 HOH HOH . H 7 HOH A 33 730 730 HOH HOH . H 7 HOH A 34 731 731 HOH HOH . H 7 HOH A 35 732 732 HOH HOH . H 7 HOH A 36 733 733 HOH HOH . H 7 HOH A 37 734 734 HOH HOH . H 7 HOH A 38 735 735 HOH HOH . H 7 HOH A 39 736 736 HOH HOH . H 7 HOH A 40 737 737 HOH HOH . H 7 HOH A 41 738 738 HOH HOH . H 7 HOH A 42 739 739 HOH HOH . H 7 HOH A 43 740 740 HOH HOH . H 7 HOH A 44 741 741 HOH HOH . H 7 HOH A 45 742 742 HOH HOH . H 7 HOH A 46 743 743 HOH HOH . H 7 HOH A 47 744 744 HOH HOH . H 7 HOH A 48 745 745 HOH HOH . H 7 HOH A 49 746 746 HOH HOH . H 7 HOH A 50 747 747 HOH HOH . H 7 HOH A 51 748 748 HOH HOH . H 7 HOH A 52 749 749 HOH HOH . H 7 HOH A 53 750 750 HOH HOH . H 7 HOH A 54 751 751 HOH HOH . H 7 HOH A 55 752 752 HOH HOH . H 7 HOH A 56 753 753 HOH HOH . H 7 HOH A 57 754 754 HOH HOH . H 7 HOH A 58 755 755 HOH HOH . H 7 HOH A 59 756 756 HOH HOH . H 7 HOH A 60 757 757 HOH HOH . H 7 HOH A 61 758 758 HOH HOH . H 7 HOH A 62 759 759 HOH HOH . H 7 HOH A 63 760 760 HOH HOH . H 7 HOH A 64 761 761 HOH HOH . H 7 HOH A 65 762 762 HOH HOH . H 7 HOH A 66 763 763 HOH HOH . H 7 HOH A 67 764 764 HOH HOH . H 7 HOH A 68 765 765 HOH HOH . H 7 HOH A 69 766 766 HOH HOH . H 7 HOH A 70 767 767 HOH HOH . H 7 HOH A 71 768 768 HOH HOH . H 7 HOH A 72 769 769 HOH HOH . H 7 HOH A 73 770 770 HOH HOH . H 7 HOH A 74 771 771 HOH HOH . H 7 HOH A 75 772 772 HOH HOH . H 7 HOH A 76 773 773 HOH HOH . H 7 HOH A 77 774 774 HOH HOH . H 7 HOH A 78 775 775 HOH HOH . H 7 HOH A 79 776 776 HOH HOH . H 7 HOH A 80 777 777 HOH HOH . H 7 HOH A 81 778 778 HOH HOH . H 7 HOH A 82 779 779 HOH HOH . H 7 HOH A 83 780 780 HOH HOH . H 7 HOH A 84 781 781 HOH HOH . H 7 HOH A 85 782 782 HOH HOH . H 7 HOH A 86 783 783 HOH HOH . H 7 HOH A 87 784 784 HOH HOH . H 7 HOH A 88 785 785 HOH HOH . H 7 HOH A 89 786 786 HOH HOH . H 7 HOH A 90 787 787 HOH HOH . H 7 HOH A 91 788 788 HOH HOH . H 7 HOH A 92 789 789 HOH HOH . H 7 HOH A 93 790 790 HOH HOH . H 7 HOH A 94 791 791 HOH HOH . H 7 HOH A 95 792 792 HOH HOH . H 7 HOH A 96 793 793 HOH HOH . H 7 HOH A 97 794 794 HOH HOH . H 7 HOH A 98 795 795 HOH HOH . H 7 HOH A 99 796 796 HOH HOH . H 7 HOH A 100 797 797 HOH HOH . H 7 HOH A 101 798 798 HOH HOH . H 7 HOH A 102 799 799 HOH HOH . H 7 HOH A 103 800 800 HOH HOH . H 7 HOH A 104 801 801 HOH HOH . H 7 HOH A 105 802 802 HOH HOH . H 7 HOH A 106 803 803 HOH HOH . H 7 HOH A 107 804 804 HOH HOH . H 7 HOH A 108 805 805 HOH HOH . H 7 HOH A 109 806 806 HOH HOH . H 7 HOH A 110 807 807 HOH HOH . H 7 HOH A 111 808 808 HOH HOH . H 7 HOH A 112 809 809 HOH HOH . H 7 HOH A 113 810 810 HOH HOH . H 7 HOH A 114 811 811 HOH HOH . H 7 HOH A 115 812 812 HOH HOH . H 7 HOH A 116 813 813 HOH HOH . H 7 HOH A 117 814 814 HOH HOH . H 7 HOH A 118 815 815 HOH HOH . H 7 HOH A 119 816 816 HOH HOH . H 7 HOH A 120 817 817 HOH HOH . H 7 HOH A 121 818 818 HOH HOH . H 7 HOH A 122 819 819 HOH HOH . H 7 HOH A 123 820 820 HOH HOH . H 7 HOH A 124 821 821 HOH HOH . H 7 HOH A 125 822 822 HOH HOH . H 7 HOH A 126 823 823 HOH HOH . H 7 HOH A 127 824 824 HOH HOH . H 7 HOH A 128 825 825 HOH HOH . H 7 HOH A 129 826 826 HOH HOH . H 7 HOH A 130 827 827 HOH HOH . H 7 HOH A 131 828 828 HOH HOH . H 7 HOH A 132 829 829 HOH HOH . H 7 HOH A 133 830 830 HOH HOH . H 7 HOH A 134 831 831 HOH HOH . H 7 HOH A 135 832 832 HOH HOH . H 7 HOH A 136 833 833 HOH HOH . H 7 HOH A 137 834 834 HOH HOH . H 7 HOH A 138 835 835 HOH HOH . H 7 HOH A 139 836 836 HOH HOH . H 7 HOH A 140 837 837 HOH HOH . H 7 HOH A 141 838 838 HOH HOH . H 7 HOH A 142 839 839 HOH HOH . H 7 HOH A 143 840 840 HOH HOH . H 7 HOH A 144 841 841 HOH HOH . H 7 HOH A 145 842 842 HOH HOH . H 7 HOH A 146 843 843 HOH HOH . H 7 HOH A 147 844 844 HOH HOH . H 7 HOH A 148 845 845 HOH HOH . H 7 HOH A 149 846 846 HOH HOH . H 7 HOH A 150 847 847 HOH HOH . H 7 HOH A 151 848 848 HOH HOH . H 7 HOH A 152 849 849 HOH HOH . H 7 HOH A 153 850 850 HOH HOH . H 7 HOH A 154 851 851 HOH HOH . H 7 HOH A 155 852 852 HOH HOH . H 7 HOH A 156 853 853 HOH HOH . H 7 HOH A 157 854 854 HOH HOH . H 7 HOH A 158 855 855 HOH HOH . H 7 HOH A 159 856 856 HOH HOH . H 7 HOH A 160 857 857 HOH HOH . H 7 HOH A 161 858 858 HOH HOH . H 7 HOH A 162 859 859 HOH HOH . H 7 HOH A 163 860 860 HOH HOH . H 7 HOH A 164 861 861 HOH HOH . H 7 HOH A 165 862 862 HOH HOH . H 7 HOH A 166 863 863 HOH HOH . H 7 HOH A 167 864 864 HOH HOH . H 7 HOH A 168 865 865 HOH HOH . H 7 HOH A 169 866 866 HOH HOH . H 7 HOH A 170 867 867 HOH HOH . H 7 HOH A 171 868 868 HOH HOH . H 7 HOH A 172 869 869 HOH HOH . H 7 HOH A 173 870 870 HOH HOH . H 7 HOH A 174 871 871 HOH HOH . H 7 HOH A 175 872 872 HOH HOH . H 7 HOH A 176 873 873 HOH HOH . H 7 HOH A 177 874 874 HOH HOH . H 7 HOH A 178 875 875 HOH HOH . H 7 HOH A 179 876 876 HOH HOH . H 7 HOH A 180 877 877 HOH HOH . H 7 HOH A 181 878 878 HOH HOH . H 7 HOH A 182 879 879 HOH HOH . H 7 HOH A 183 880 880 HOH HOH . H 7 HOH A 184 881 881 HOH HOH . H 7 HOH A 185 882 882 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 6 _atom_site.Cartn_x 46.915 _atom_site.Cartn_y -14.829 _atom_site.Cartn_z 12.085 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 11.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 686 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #