data_1A4F # _model_server_result.job_id xOtQt2k9lgzigQYj6u64CQ _model_server_result.datetime_utc '2024-12-13 13:03:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a4f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":150}' # _entry.id 1A4F # _exptl.entry_id 1A4F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1A4F _cell.length_a 81.59 _cell.length_b 81.59 _cell.length_c 107.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A4F _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 81.59 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc2 C FE HEM . A HEM 150 1_555 D O1 OXY . A OXY 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? metalc ? metalc3 C FE HEM . A HEM 150 1_555 D O2 OXY . A OXY 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 E FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc5 E FE HEM . B HEM 150 1_555 F O1 OXY . B OXY 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? metalc ? metalc6 E FE HEM . B HEM 150 1_555 F O2 OXY . B OXY 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.003 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1A4F _atom_sites.fract_transf_matrix[1][1] 0.012256 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009321 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 150 150 HEM HEM . D 4 OXY A 1 151 150 OXY OXY . E 3 HEM B 1 150 150 HEM HEM . F 4 OXY B 1 151 150 OXY OXY . G 5 HOH A 1 152 3 HOH HOH . G 5 HOH A 2 153 7 HOH HOH . G 5 HOH A 3 154 8 HOH HOH . G 5 HOH A 4 155 9 HOH HOH . G 5 HOH A 5 156 10 HOH HOH . G 5 HOH A 6 157 12 HOH HOH . G 5 HOH A 7 158 14 HOH HOH . G 5 HOH A 8 159 20 HOH HOH . G 5 HOH A 9 160 22 HOH HOH . G 5 HOH A 10 161 24 HOH HOH . G 5 HOH A 11 162 25 HOH HOH . G 5 HOH A 12 163 31 HOH HOH . G 5 HOH A 13 164 33 HOH HOH . G 5 HOH A 14 165 38 HOH HOH . G 5 HOH A 15 166 40 HOH HOH . G 5 HOH A 16 167 41 HOH HOH . G 5 HOH A 17 168 49 HOH HOH . G 5 HOH A 18 169 51 HOH HOH . G 5 HOH A 19 170 58 HOH HOH . G 5 HOH A 20 171 60 HOH HOH . G 5 HOH A 21 172 61 HOH HOH . G 5 HOH A 22 173 62 HOH HOH . G 5 HOH A 23 174 63 HOH HOH . G 5 HOH A 24 175 64 HOH HOH . G 5 HOH A 25 176 66 HOH HOH . G 5 HOH A 26 177 67 HOH HOH . G 5 HOH A 27 178 68 HOH HOH . G 5 HOH A 28 179 70 HOH HOH . G 5 HOH A 29 180 72 HOH HOH . G 5 HOH A 30 181 73 HOH HOH . G 5 HOH A 31 182 74 HOH HOH . G 5 HOH A 32 183 75 HOH HOH . G 5 HOH A 33 184 76 HOH HOH . G 5 HOH A 34 185 77 HOH HOH . G 5 HOH A 35 186 78 HOH HOH . G 5 HOH A 36 187 80 HOH HOH . G 5 HOH A 37 188 81 HOH HOH . G 5 HOH A 38 189 82 HOH HOH . G 5 HOH A 39 190 83 HOH HOH . G 5 HOH A 40 191 87 HOH HOH . G 5 HOH A 41 192 89 HOH HOH . G 5 HOH A 42 193 90 HOH HOH . G 5 HOH A 43 194 92 HOH HOH . G 5 HOH A 44 195 93 HOH HOH . G 5 HOH A 45 196 94 HOH HOH . G 5 HOH A 46 197 95 HOH HOH . G 5 HOH A 47 198 97 HOH HOH . G 5 HOH A 48 199 98 HOH HOH . G 5 HOH A 49 200 101 HOH HOH . G 5 HOH A 50 201 105 HOH HOH . G 5 HOH A 51 202 106 HOH HOH . H 5 HOH B 1 152 1 HOH HOH . H 5 HOH B 2 153 2 HOH HOH . H 5 HOH B 3 154 4 HOH HOH . H 5 HOH B 4 155 5 HOH HOH . H 5 HOH B 5 156 6 HOH HOH . H 5 HOH B 6 157 11 HOH HOH . H 5 HOH B 7 158 13 HOH HOH . H 5 HOH B 8 159 15 HOH HOH . H 5 HOH B 9 160 16 HOH HOH . H 5 HOH B 10 161 17 HOH HOH . H 5 HOH B 11 162 18 HOH HOH . H 5 HOH B 12 163 19 HOH HOH . H 5 HOH B 13 164 21 HOH HOH . H 5 HOH B 14 165 23 HOH HOH . H 5 HOH B 15 166 26 HOH HOH . H 5 HOH B 16 167 27 HOH HOH . H 5 HOH B 17 168 28 HOH HOH . H 5 HOH B 18 169 29 HOH HOH . H 5 HOH B 19 170 30 HOH HOH . H 5 HOH B 20 171 32 HOH HOH . H 5 HOH B 21 172 34 HOH HOH . H 5 HOH B 22 173 35 HOH HOH . H 5 HOH B 23 174 36 HOH HOH . H 5 HOH B 24 175 37 HOH HOH . H 5 HOH B 25 176 39 HOH HOH . H 5 HOH B 26 177 42 HOH HOH . H 5 HOH B 27 178 43 HOH HOH . H 5 HOH B 28 179 44 HOH HOH . H 5 HOH B 29 180 45 HOH HOH . H 5 HOH B 30 181 46 HOH HOH . H 5 HOH B 31 182 47 HOH HOH . H 5 HOH B 32 183 48 HOH HOH . H 5 HOH B 33 184 50 HOH HOH . H 5 HOH B 34 185 52 HOH HOH . H 5 HOH B 35 186 53 HOH HOH . H 5 HOH B 36 187 54 HOH HOH . H 5 HOH B 37 188 55 HOH HOH . H 5 HOH B 38 189 56 HOH HOH . H 5 HOH B 39 190 57 HOH HOH . H 5 HOH B 40 191 59 HOH HOH . H 5 HOH B 41 192 65 HOH HOH . H 5 HOH B 42 193 69 HOH HOH . H 5 HOH B 43 194 71 HOH HOH . H 5 HOH B 44 195 79 HOH HOH . H 5 HOH B 45 196 84 HOH HOH . H 5 HOH B 46 197 85 HOH HOH . H 5 HOH B 47 198 86 HOH HOH . H 5 HOH B 48 199 88 HOH HOH . H 5 HOH B 49 200 91 HOH HOH . H 5 HOH B 50 201 96 HOH HOH . H 5 HOH B 51 202 99 HOH HOH . H 5 HOH B 52 203 100 HOH HOH . H 5 HOH B 53 204 102 HOH HOH . H 5 HOH B 54 205 103 HOH HOH . H 5 HOH B 55 206 104 HOH HOH . H 5 HOH B 56 207 107 HOH HOH . H 5 HOH B 57 208 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 3 59.638 -6.211 21.105 1 16.48 ? CHA HEM 150 B 1 HETATM 2 C CHB HEM . . . E 3 58.118 -1.843 19.87 1 16.38 ? CHB HEM 150 B 1 HETATM 3 C CHC HEM . . . E 3 54.908 -2.047 23.503 1 17.23 ? CHC HEM 150 B 1 HETATM 4 C CHD HEM . . . E 3 56.877 -6.217 25.048 1 18.45 ? CHD HEM 150 B 1 HETATM 5 C C1A HEM . . . E 3 59.566 -5.004 20.447 1 17.62 ? C1A HEM 150 B 1 HETATM 6 C C2A HEM . . . E 3 60.345 -4.541 19.361 1 14.68 ? C2A HEM 150 B 1 HETATM 7 C C3A HEM . . . E 3 59.956 -3.331 19.031 1 17.68 ? C3A HEM 150 B 1 HETATM 8 C C4A HEM . . . E 3 58.872 -2.99 19.923 1 16.24 ? C4A HEM 150 B 1 HETATM 9 C CMA HEM . . . E 3 60.554 -2.447 17.901 1 19.05 ? CMA HEM 150 B 1 HETATM 10 C CAA HEM . . . E 3 61.583 -5.27 18.836 1 23.14 ? CAA HEM 150 B 1 HETATM 11 C CBA HEM . . . E 3 61.458 -6.303 17.832 1 48.01 ? CBA HEM 150 B 1 HETATM 12 C CGA HEM . . . E 3 62.709 -6.742 17.122 1 55.92 ? CGA HEM 150 B 1 HETATM 13 O O1A HEM . . . E 3 62.543 -7.835 16.518 1 62.37 ? O1A HEM 150 B 1 HETATM 14 O O2A HEM . . . E 3 63.664 -5.95 17.265 1 59.79 ? O2A HEM 150 B 1 HETATM 15 C C1B HEM . . . E 3 57.094 -1.565 20.753 1 18.89 ? C1B HEM 150 B 1 HETATM 16 C C2B HEM . . . E 3 56.302 -0.331 20.726 1 12.54 ? C2B HEM 150 B 1 HETATM 17 C C3B HEM . . . E 3 55.416 -0.358 21.713 1 17.15 ? C3B HEM 150 B 1 HETATM 18 C C4B HEM . . . E 3 55.648 -1.611 22.423 1 16.85 ? C4B HEM 150 B 1 HETATM 19 C CMB HEM . . . E 3 56.571 0.738 19.69 1 5.63 ? CMB HEM 150 B 1 HETATM 20 C CAB HEM . . . E 3 54.368 0.68 22.21 1 17.37 ? CAB HEM 150 B 1 HETATM 21 C CBB HEM . . . E 3 53.142 0.807 21.767 1 19.08 ? CBB HEM 150 B 1 HETATM 22 C C1C HEM . . . E 3 55.154 -3.182 24.265 1 15.25 ? C1C HEM 150 B 1 HETATM 23 C C2C HEM . . . E 3 54.652 -3.445 25.556 1 7.44 ? C2C HEM 150 B 1 HETATM 24 C C3C HEM . . . E 3 55.219 -4.579 25.973 1 9.78 ? C3C HEM 150 B 1 HETATM 25 C C4C HEM . . . E 3 56.066 -5.056 24.93 1 11.17 ? C4C HEM 150 B 1 HETATM 26 C CMC HEM . . . E 3 53.659 -2.604 26.388 1 12.45 ? CMC HEM 150 B 1 HETATM 27 C CAC HEM . . . E 3 55.087 -5.335 27.297 1 13.83 ? CAC HEM 150 B 1 HETATM 28 C CBC HEM . . . E 3 54.134 -5.03 28.169 1 23.52 ? CBC HEM 150 B 1 HETATM 29 C C1D HEM . . . E 3 57.825 -6.613 24.12 1 14.28 ? C1D HEM 150 B 1 HETATM 30 C C2D HEM . . . E 3 58.679 -7.796 24.18 1 13.38 ? C2D HEM 150 B 1 HETATM 31 C C3D HEM . . . E 3 59.376 -7.802 23.076 1 16.64 ? C3D HEM 150 B 1 HETATM 32 C C4D HEM . . . E 3 59.047 -6.623 22.276 1 17.76 ? C4D HEM 150 B 1 HETATM 33 C CMD HEM . . . E 3 58.687 -8.841 25.295 1 11.97 ? CMD HEM 150 B 1 HETATM 34 C CAD HEM . . . E 3 60.467 -8.791 22.636 1 25.57 ? CAD HEM 150 B 1 HETATM 35 C CBD HEM . . . E 3 61.777 -8.622 23.465 1 32.45 ? CBD HEM 150 B 1 HETATM 36 C CGD HEM . . . E 3 62.853 -9.514 22.841 1 44.67 ? CGD HEM 150 B 1 HETATM 37 O O1D HEM . . . E 3 62.419 -10.391 22.004 1 53.58 ? O1D HEM 150 B 1 HETATM 38 O O2D HEM . . . E 3 64.041 -9.318 23.168 1 50.31 ? O2D HEM 150 B 1 HETATM 39 N NA HEM . . . E 3 58.61 -4.039 20.8 1 18.7 ? NA HEM 150 B 1 HETATM 40 N NB HEM . . . E 3 56.678 -2.32 21.826 1 19.18 ? NB HEM 150 B 1 HETATM 41 N NC HEM . . . E 3 56.041 -4.21 23.857 1 19.25 ? NC HEM 150 B 1 HETATM 42 N ND HEM . . . E 3 58.084 -5.902 22.947 1 16.71 ? ND HEM 150 B 1 HETATM 43 FE FE HEM . . . E 3 57.342 -4.154 22.341 1 19.83 ? FE HEM 150 B 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #