data_1A4F # _model_server_result.job_id nYtRon2-k9TL96nRGLsf9A _model_server_result.datetime_utc '2024-12-03 22:58:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a4f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":151}' # _entry.id 1A4F # _exptl.entry_id 1A4F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 31.999 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OXYGEN MOLECULE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1A4F _cell.length_a 81.59 _cell.length_b 81.59 _cell.length_c 107.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A4F _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 81.59 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc2 C FE HEM . A HEM 150 1_555 D O1 OXY . A OXY 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? metalc ? metalc3 C FE HEM . A HEM 150 1_555 D O2 OXY . A OXY 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 E FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc5 E FE HEM . B HEM 150 1_555 F O1 OXY . B OXY 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? metalc ? metalc6 E FE HEM . B HEM 150 1_555 F O2 OXY . B OXY 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.003 ? # _chem_comp.formula O2 _chem_comp.formula_weight 31.999 _chem_comp.id OXY _chem_comp.mon_nstd_flag . _chem_comp.name 'OXYGEN MOLECULE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 O1 _chem_comp_bond.atom_id_2 O2 _chem_comp_bond.comp_id OXY _chem_comp_bond.value_order doub _chem_comp_bond.pdbx_ordinal 319 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 1A4F _atom_sites.fract_transf_matrix[1][1] 0.012256 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009321 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 150 150 HEM HEM . D 4 OXY A 1 151 150 OXY OXY . E 3 HEM B 1 150 150 HEM HEM . F 4 OXY B 1 151 150 OXY OXY . G 5 HOH A 1 152 3 HOH HOH . G 5 HOH A 2 153 7 HOH HOH . G 5 HOH A 3 154 8 HOH HOH . G 5 HOH A 4 155 9 HOH HOH . G 5 HOH A 5 156 10 HOH HOH . G 5 HOH A 6 157 12 HOH HOH . G 5 HOH A 7 158 14 HOH HOH . G 5 HOH A 8 159 20 HOH HOH . G 5 HOH A 9 160 22 HOH HOH . G 5 HOH A 10 161 24 HOH HOH . G 5 HOH A 11 162 25 HOH HOH . G 5 HOH A 12 163 31 HOH HOH . G 5 HOH A 13 164 33 HOH HOH . G 5 HOH A 14 165 38 HOH HOH . G 5 HOH A 15 166 40 HOH HOH . G 5 HOH A 16 167 41 HOH HOH . G 5 HOH A 17 168 49 HOH HOH . G 5 HOH A 18 169 51 HOH HOH . G 5 HOH A 19 170 58 HOH HOH . G 5 HOH A 20 171 60 HOH HOH . G 5 HOH A 21 172 61 HOH HOH . G 5 HOH A 22 173 62 HOH HOH . G 5 HOH A 23 174 63 HOH HOH . G 5 HOH A 24 175 64 HOH HOH . G 5 HOH A 25 176 66 HOH HOH . G 5 HOH A 26 177 67 HOH HOH . G 5 HOH A 27 178 68 HOH HOH . G 5 HOH A 28 179 70 HOH HOH . G 5 HOH A 29 180 72 HOH HOH . G 5 HOH A 30 181 73 HOH HOH . G 5 HOH A 31 182 74 HOH HOH . G 5 HOH A 32 183 75 HOH HOH . G 5 HOH A 33 184 76 HOH HOH . G 5 HOH A 34 185 77 HOH HOH . G 5 HOH A 35 186 78 HOH HOH . G 5 HOH A 36 187 80 HOH HOH . G 5 HOH A 37 188 81 HOH HOH . G 5 HOH A 38 189 82 HOH HOH . G 5 HOH A 39 190 83 HOH HOH . G 5 HOH A 40 191 87 HOH HOH . G 5 HOH A 41 192 89 HOH HOH . G 5 HOH A 42 193 90 HOH HOH . G 5 HOH A 43 194 92 HOH HOH . G 5 HOH A 44 195 93 HOH HOH . G 5 HOH A 45 196 94 HOH HOH . G 5 HOH A 46 197 95 HOH HOH . G 5 HOH A 47 198 97 HOH HOH . G 5 HOH A 48 199 98 HOH HOH . G 5 HOH A 49 200 101 HOH HOH . G 5 HOH A 50 201 105 HOH HOH . G 5 HOH A 51 202 106 HOH HOH . H 5 HOH B 1 152 1 HOH HOH . H 5 HOH B 2 153 2 HOH HOH . H 5 HOH B 3 154 4 HOH HOH . H 5 HOH B 4 155 5 HOH HOH . H 5 HOH B 5 156 6 HOH HOH . H 5 HOH B 6 157 11 HOH HOH . H 5 HOH B 7 158 13 HOH HOH . H 5 HOH B 8 159 15 HOH HOH . H 5 HOH B 9 160 16 HOH HOH . H 5 HOH B 10 161 17 HOH HOH . H 5 HOH B 11 162 18 HOH HOH . H 5 HOH B 12 163 19 HOH HOH . H 5 HOH B 13 164 21 HOH HOH . H 5 HOH B 14 165 23 HOH HOH . H 5 HOH B 15 166 26 HOH HOH . H 5 HOH B 16 167 27 HOH HOH . H 5 HOH B 17 168 28 HOH HOH . H 5 HOH B 18 169 29 HOH HOH . H 5 HOH B 19 170 30 HOH HOH . H 5 HOH B 20 171 32 HOH HOH . H 5 HOH B 21 172 34 HOH HOH . H 5 HOH B 22 173 35 HOH HOH . H 5 HOH B 23 174 36 HOH HOH . H 5 HOH B 24 175 37 HOH HOH . H 5 HOH B 25 176 39 HOH HOH . H 5 HOH B 26 177 42 HOH HOH . H 5 HOH B 27 178 43 HOH HOH . H 5 HOH B 28 179 44 HOH HOH . H 5 HOH B 29 180 45 HOH HOH . H 5 HOH B 30 181 46 HOH HOH . H 5 HOH B 31 182 47 HOH HOH . H 5 HOH B 32 183 48 HOH HOH . H 5 HOH B 33 184 50 HOH HOH . H 5 HOH B 34 185 52 HOH HOH . H 5 HOH B 35 186 53 HOH HOH . H 5 HOH B 36 187 54 HOH HOH . H 5 HOH B 37 188 55 HOH HOH . H 5 HOH B 38 189 56 HOH HOH . H 5 HOH B 39 190 57 HOH HOH . H 5 HOH B 40 191 59 HOH HOH . H 5 HOH B 41 192 65 HOH HOH . H 5 HOH B 42 193 69 HOH HOH . H 5 HOH B 43 194 71 HOH HOH . H 5 HOH B 44 195 79 HOH HOH . H 5 HOH B 45 196 84 HOH HOH . H 5 HOH B 46 197 85 HOH HOH . H 5 HOH B 47 198 86 HOH HOH . H 5 HOH B 48 199 88 HOH HOH . H 5 HOH B 49 200 91 HOH HOH . H 5 HOH B 50 201 96 HOH HOH . H 5 HOH B 51 202 99 HOH HOH . H 5 HOH B 52 203 100 HOH HOH . H 5 HOH B 53 204 102 HOH HOH . H 5 HOH B 54 205 103 HOH HOH . H 5 HOH B 55 206 104 HOH HOH . H 5 HOH B 56 207 107 HOH HOH . H 5 HOH B 57 208 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 OXY . . . D 4 37.643 18.726 39.604 1 18.09 ? O1 OXY 151 A 1 HETATM 2 O O2 OXY . . . D 4 38.302 19.384 38.817 1 43.77 ? O2 OXY 151 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 2 #