data_1A4H # _model_server_result.job_id TUy4Z_fJzTHrvJFVwFvA7g _model_server_result.datetime_utc '2024-11-16 14:58:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a4h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1A4H # _exptl.entry_id 1A4H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 560.636 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GELDANAMYCIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1A4H _cell.length_a 74.12 _cell.length_b 74.12 _cell.length_c 111.35 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A4H _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 74.12 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H40 N2 O9' _chem_comp.formula_weight 560.636 _chem_comp.id GDM _chem_comp.mon_nstd_flag . _chem_comp.name GELDANAMYCIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 GDM doub 70 n n O2 C6 GDM sing 71 n n O2 C23 GDM sing 72 n n O3 C7 GDM sing 73 n n O3 C24 GDM sing 74 n n O4 C24 GDM doub 75 n n O5 C11 GDM sing 76 n n O5 HO5 GDM sing 77 n n O6 C12 GDM sing 78 n n O6 C27 GDM sing 79 n n O7 C17 GDM sing 80 n n O7 C29 GDM sing 81 n n O8 C18 GDM doub 82 n n O9 C21 GDM doub 83 n n N1 C1 GDM sing 84 n n N1 C20 GDM sing 85 n n N1 HN1 GDM sing 86 n n N2 C24 GDM sing 87 n n N2 HN21 GDM sing 88 n n N2 HN22 GDM sing 89 n n C1 C2 GDM sing 90 n n C2 C3 GDM doub 91 e n C2 C22 GDM sing 92 n n C3 C4 GDM sing 93 n n C3 H3 GDM sing 94 n n C4 C5 GDM doub 95 z n C4 H4 GDM sing 96 n n C5 C6 GDM sing 97 n n C5 H5 GDM sing 98 n n C6 C7 GDM sing 99 n n C6 H6 GDM sing 100 n n C7 C8 GDM sing 101 n n C7 H7 GDM sing 102 n n C8 C9 GDM doub 103 e n C8 C25 GDM sing 104 n n C9 C10 GDM sing 105 n n C9 H9 GDM sing 106 n n C10 C11 GDM sing 107 n n C10 C26 GDM sing 108 n n C10 H10 GDM sing 109 n n C11 C12 GDM sing 110 n n C11 H11 GDM sing 111 n n C12 C13 GDM sing 112 n n C12 H12 GDM sing 113 n n C13 C14 GDM sing 114 n n C13 H131 GDM sing 115 n n C13 H132 GDM sing 116 n n C14 C15 GDM sing 117 n n C14 C28 GDM sing 118 n n C14 H14 GDM sing 119 n n C15 C16 GDM sing 120 n n C15 H151 GDM sing 121 n n C15 H152 GDM sing 122 n n C16 C17 GDM doub 123 n n C16 C21 GDM sing 124 n n C17 C18 GDM sing 125 n n C18 C19 GDM sing 126 n n C19 C20 GDM doub 127 n n C19 H19 GDM sing 128 n n C20 C21 GDM sing 129 n n C22 H221 GDM sing 130 n n C22 H222 GDM sing 131 n n C22 H223 GDM sing 132 n n C23 H231 GDM sing 133 n n C23 H232 GDM sing 134 n n C23 H233 GDM sing 135 n n C25 H251 GDM sing 136 n n C25 H252 GDM sing 137 n n C25 H253 GDM sing 138 n n C26 H261 GDM sing 139 n n C26 H262 GDM sing 140 n n C26 H263 GDM sing 141 n n C27 H271 GDM sing 142 n n C27 H272 GDM sing 143 n n C27 H273 GDM sing 144 n n C28 H281 GDM sing 145 n n C28 H282 GDM sing 146 n n C28 H283 GDM sing 147 n n C29 H291 GDM sing 148 n n C29 H292 GDM sing 149 n n C29 H293 GDM sing 150 n n # _atom_sites.entry_id 1A4H _atom_sites.fract_transf_matrix[1][1] 0.013492 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013492 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008981 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDM A 1 300 300 GDM GMY . C 3 HOH A 1 400 400 HOH HOH . C 3 HOH A 2 401 401 HOH HOH . C 3 HOH A 3 402 402 HOH HOH . C 3 HOH A 4 403 403 HOH HOH . C 3 HOH A 5 404 404 HOH HOH . C 3 HOH A 6 405 405 HOH HOH . C 3 HOH A 7 406 406 HOH HOH . C 3 HOH A 8 407 407 HOH HOH . C 3 HOH A 9 408 408 HOH HOH . C 3 HOH A 10 409 409 HOH HOH . C 3 HOH A 11 410 410 HOH HOH . C 3 HOH A 12 411 411 HOH HOH . C 3 HOH A 13 412 412 HOH HOH . C 3 HOH A 14 413 413 HOH HOH . C 3 HOH A 15 414 414 HOH HOH . C 3 HOH A 16 415 415 HOH HOH . C 3 HOH A 17 416 416 HOH HOH . C 3 HOH A 18 417 417 HOH HOH . C 3 HOH A 19 418 418 HOH HOH . C 3 HOH A 20 419 419 HOH HOH . C 3 HOH A 21 420 420 HOH HOH . C 3 HOH A 22 421 421 HOH HOH . C 3 HOH A 23 422 422 HOH HOH . C 3 HOH A 24 423 423 HOH HOH . C 3 HOH A 25 424 424 HOH HOH . C 3 HOH A 26 425 425 HOH HOH . C 3 HOH A 27 426 426 HOH HOH . C 3 HOH A 28 427 427 HOH HOH . C 3 HOH A 29 428 428 HOH HOH . C 3 HOH A 30 429 429 HOH HOH . C 3 HOH A 31 430 430 HOH HOH . C 3 HOH A 32 431 431 HOH HOH . C 3 HOH A 33 432 432 HOH HOH . C 3 HOH A 34 433 433 HOH HOH . C 3 HOH A 35 434 434 HOH HOH . C 3 HOH A 36 435 435 HOH HOH . C 3 HOH A 37 436 436 HOH HOH . C 3 HOH A 38 437 437 HOH HOH . C 3 HOH A 39 438 438 HOH HOH . C 3 HOH A 40 439 439 HOH HOH . C 3 HOH A 41 440 440 HOH HOH . C 3 HOH A 42 441 441 HOH HOH . C 3 HOH A 43 442 442 HOH HOH . C 3 HOH A 44 443 443 HOH HOH . C 3 HOH A 45 444 444 HOH HOH . C 3 HOH A 46 445 445 HOH HOH . C 3 HOH A 47 446 446 HOH HOH . C 3 HOH A 48 447 447 HOH HOH . C 3 HOH A 49 448 448 HOH HOH . C 3 HOH A 50 449 449 HOH HOH . C 3 HOH A 51 450 450 HOH HOH . C 3 HOH A 52 451 451 HOH HOH . C 3 HOH A 53 452 452 HOH HOH . C 3 HOH A 54 453 453 HOH HOH . C 3 HOH A 55 454 454 HOH HOH . C 3 HOH A 56 455 455 HOH HOH . C 3 HOH A 57 456 456 HOH HOH . C 3 HOH A 58 457 457 HOH HOH . C 3 HOH A 59 458 458 HOH HOH . C 3 HOH A 60 459 459 HOH HOH . C 3 HOH A 61 460 460 HOH HOH . C 3 HOH A 62 461 461 HOH HOH . C 3 HOH A 63 462 462 HOH HOH . C 3 HOH A 64 463 463 HOH HOH . C 3 HOH A 65 464 464 HOH HOH . C 3 HOH A 66 465 465 HOH HOH . C 3 HOH A 67 466 466 HOH HOH . C 3 HOH A 68 467 467 HOH HOH . C 3 HOH A 69 468 468 HOH HOH . C 3 HOH A 70 469 469 HOH HOH . C 3 HOH A 71 470 470 HOH HOH . C 3 HOH A 72 471 471 HOH HOH . C 3 HOH A 73 472 472 HOH HOH . C 3 HOH A 74 473 473 HOH HOH . C 3 HOH A 75 474 474 HOH HOH . C 3 HOH A 76 475 475 HOH HOH . C 3 HOH A 77 476 476 HOH HOH . C 3 HOH A 78 477 477 HOH HOH . C 3 HOH A 79 478 478 HOH HOH . C 3 HOH A 80 479 479 HOH HOH . C 3 HOH A 81 480 480 HOH HOH . C 3 HOH A 82 481 481 HOH HOH . C 3 HOH A 83 482 482 HOH HOH . C 3 HOH A 84 483 483 HOH HOH . C 3 HOH A 85 484 484 HOH HOH . C 3 HOH A 86 485 485 HOH HOH . C 3 HOH A 87 486 486 HOH HOH . C 3 HOH A 88 487 487 HOH HOH . C 3 HOH A 89 488 488 HOH HOH . C 3 HOH A 90 489 489 HOH HOH . C 3 HOH A 91 490 490 HOH HOH . C 3 HOH A 92 491 491 HOH HOH . C 3 HOH A 93 492 492 HOH HOH . C 3 HOH A 94 493 493 HOH HOH . C 3 HOH A 95 494 494 HOH HOH . C 3 HOH A 96 495 495 HOH HOH . C 3 HOH A 97 496 496 HOH HOH . C 3 HOH A 98 497 497 HOH HOH . C 3 HOH A 99 498 498 HOH HOH . C 3 HOH A 100 499 499 HOH HOH . C 3 HOH A 101 500 500 HOH HOH . C 3 HOH A 102 501 501 HOH HOH . C 3 HOH A 103 502 502 HOH HOH . C 3 HOH A 104 503 503 HOH HOH . C 3 HOH A 105 504 504 HOH HOH . C 3 HOH A 106 505 505 HOH HOH . C 3 HOH A 107 506 506 HOH HOH . C 3 HOH A 108 507 507 HOH HOH . C 3 HOH A 109 508 508 HOH HOH . C 3 HOH A 110 509 509 HOH HOH . C 3 HOH A 111 510 510 HOH HOH . C 3 HOH A 112 511 511 HOH HOH . C 3 HOH A 113 512 512 HOH HOH . C 3 HOH A 114 513 513 HOH HOH . C 3 HOH A 115 514 514 HOH HOH . C 3 HOH A 116 515 515 HOH HOH . C 3 HOH A 117 516 516 HOH HOH . C 3 HOH A 118 517 517 HOH HOH . C 3 HOH A 119 518 518 HOH HOH . C 3 HOH A 120 519 519 HOH HOH . C 3 HOH A 121 520 520 HOH HOH . C 3 HOH A 122 521 521 HOH HOH . C 3 HOH A 123 522 522 HOH HOH . C 3 HOH A 124 523 523 HOH HOH . C 3 HOH A 125 524 524 HOH HOH . C 3 HOH A 126 525 525 HOH HOH . C 3 HOH A 127 526 526 HOH HOH . C 3 HOH A 128 527 527 HOH HOH . C 3 HOH A 129 528 528 HOH HOH . C 3 HOH A 130 529 529 HOH HOH . C 3 HOH A 131 530 530 HOH HOH . C 3 HOH A 132 531 531 HOH HOH . C 3 HOH A 133 532 532 HOH HOH . C 3 HOH A 134 533 533 HOH HOH . C 3 HOH A 135 534 534 HOH HOH . C 3 HOH A 136 535 535 HOH HOH . C 3 HOH A 137 536 536 HOH HOH . C 3 HOH A 138 537 537 HOH HOH . C 3 HOH A 139 538 538 HOH HOH . C 3 HOH A 140 539 539 HOH HOH . C 3 HOH A 141 540 540 HOH HOH . C 3 HOH A 142 541 541 HOH HOH . C 3 HOH A 143 542 542 HOH HOH . C 3 HOH A 144 543 543 HOH HOH . C 3 HOH A 145 544 544 HOH HOH . C 3 HOH A 146 545 545 HOH HOH . C 3 HOH A 147 546 546 HOH HOH . C 3 HOH A 148 547 547 HOH HOH . C 3 HOH A 149 548 548 HOH HOH . C 3 HOH A 150 549 549 HOH HOH . C 3 HOH A 151 550 550 HOH HOH . C 3 HOH A 152 551 551 HOH HOH . C 3 HOH A 153 552 552 HOH HOH . C 3 HOH A 154 553 553 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 GDM . . . B 2 11.898 -4.106 -0.077 1 27.57 ? O1 GDM 300 A 1 HETATM 2 O O2 GDM . . . B 2 18.316 -2.734 -2.338 1 42.57 ? O2 GDM 300 A 1 HETATM 3 O O3 GDM . . . B 2 18.306 -4.396 -4.57 1 36.1 ? O3 GDM 300 A 1 HETATM 4 O O4 GDM . . . B 2 19.821 -3.257 -5.713 1 35.35 ? O4 GDM 300 A 1 HETATM 5 O O5 GDM . . . B 2 14.676 -1.045 -9.501 1 36.18 ? O5 GDM 300 A 1 HETATM 6 O O6 GDM . . . B 2 14.563 1.448 -7.639 1 33.11 ? O6 GDM 300 A 1 HETATM 7 O O7 GDM . . . B 2 11.438 -4.414 -8.256 1 35.58 ? O7 GDM 300 A 1 HETATM 8 O O8 GDM . . . B 2 13.201 -6.302 -6.597 1 32.81 ? O8 GDM 300 A 1 HETATM 9 O O9 GDM . . . B 2 10.477 -2.628 -3.899 1 33.43 ? O9 GDM 300 A 1 HETATM 10 N N1 GDM . . . B 2 11.419 -4.621 -2.308 1 23.52 ? N1 GDM 300 A 1 HETATM 11 N N2 GDM . . . B 2 20.461 -5.093 -4.851 1 38.3 ? N2 GDM 300 A 1 HETATM 12 C C1 GDM . . . B 2 11.946 -3.771 -1.272 1 28.15 ? C1 GDM 300 A 1 HETATM 13 C C2 GDM . . . B 2 12.587 -2.355 -1.405 1 28.13 ? C2 GDM 300 A 1 HETATM 14 C C3 GDM . . . B 2 13.818 -2.408 -2.034 1 31.86 ? C3 GDM 300 A 1 HETATM 15 C C4 GDM . . . B 2 14.902 -1.403 -2.237 1 37.74 ? C4 GDM 300 A 1 HETATM 16 C C5 GDM . . . B 2 16.195 -1.727 -2.568 1 42.56 ? C5 GDM 300 A 1 HETATM 17 C C6 GDM . . . B 2 17.005 -3.009 -2.825 1 37.88 ? C6 GDM 300 A 1 HETATM 18 C C7 GDM . . . B 2 17.452 -3.252 -4.295 1 33.83 ? C7 GDM 300 A 1 HETATM 19 C C8 GDM . . . B 2 16.481 -3.208 -5.457 1 25.87 ? C8 GDM 300 A 1 HETATM 20 C C9 GDM . . . B 2 16.68 -2.36 -6.483 1 25.15 ? C9 GDM 300 A 1 HETATM 21 C C10 GDM . . . B 2 16.041 -1.975 -7.8 1 29.86 ? C10 GDM 300 A 1 HETATM 22 C C11 GDM . . . B 2 15.434 -0.654 -8.327 1 32.85 ? C11 GDM 300 A 1 HETATM 23 C C12 GDM . . . B 2 14.432 0.062 -7.381 1 32.66 ? C12 GDM 300 A 1 HETATM 24 C C13 GDM . . . B 2 12.942 -0.268 -7.526 1 31.66 ? C13 GDM 300 A 1 HETATM 25 C C14 GDM . . . B 2 12.371 -0.808 -6.199 1 30.13 ? C14 GDM 300 A 1 HETATM 26 C C15 GDM . . . B 2 11.223 -1.847 -6.504 1 29.11 ? C15 GDM 300 A 1 HETATM 27 C C16 GDM . . . B 2 11.362 -3.286 -6.025 1 28.06 ? C16 GDM 300 A 1 HETATM 28 C C17 GDM . . . B 2 11.723 -4.368 -6.823 1 27.17 ? C17 GDM 300 A 1 HETATM 29 C C18 GDM . . . B 2 12.456 -5.53 -6.018 1 25.56 ? C18 GDM 300 A 1 HETATM 30 C C19 GDM . . . B 2 12.204 -5.685 -4.54 1 24.92 ? C19 GDM 300 A 1 HETATM 31 C C20 GDM . . . B 2 11.538 -4.718 -3.851 1 24.93 ? C20 GDM 300 A 1 HETATM 32 C C21 GDM . . . B 2 11.08 -3.478 -4.551 1 28 ? C21 GDM 300 A 1 HETATM 33 C C22 GDM . . . B 2 12.012 -1.067 -0.662 1 31.51 ? C22 GDM 300 A 1 HETATM 34 C C23 GDM . . . B 2 18.522 -2.758 -0.942 1 38.63 ? C23 GDM 300 A 1 HETATM 35 C C24 GDM . . . B 2 19.521 -4.168 -5.003 1 34.05 ? C24 GDM 300 A 1 HETATM 36 C C25 GDM . . . B 2 15.788 -4.524 -5.398 1 31.22 ? C25 GDM 300 A 1 HETATM 37 C C26 GDM . . . B 2 17.263 -2.256 -8.665 1 31.16 ? C26 GDM 300 A 1 HETATM 38 C C27 GDM . . . B 2 15.158 2.253 -6.638 1 37.25 ? C27 GDM 300 A 1 HETATM 39 C C28 GDM . . . B 2 12.302 0.291 -5.071 1 29.44 ? C28 GDM 300 A 1 HETATM 40 C C29 GDM . . . B 2 10.642 -5.362 -9.133 1 46.28 ? C29 GDM 300 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 40 #