data_1A4K # _model_server_result.job_id TFJFz4Lw6w2mQ2WRJm_hPw _model_server_result.datetime_utc '2025-03-04 13:03:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a4k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":5028}' # _entry.id 1A4K # _exptl.entry_id 1A4K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1A4K _cell.length_a 69.316 _cell.length_b 96.823 _cell.length_c 172.73 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A4K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,K,L 1 1 C,D,H,I,J,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf2 A SG CYS 139 L CYS 134 1_555 A SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 B SG CYS 146 H CYS 140 1_555 B SG CYS 202 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A OE1 GLU 84 L GLU 79 1_555 E CD CD . L CD 5028 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc2 A OE1 GLU 86 L GLU 81 1_555 E CD CD . L CD 5028 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc3 A ND1 HIS 98 L HIS 93 4_465 E CD CD . L CD 5028 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc4 A ND2 ASN 143 L ASN 138 1_555 F CD CD . L CD 5029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc5 E CD CD . L CD 5028 1_555 K O HOH . L HOH 5037 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc6 E CD CD . L CD 5028 1_555 K O HOH . L HOH 5038 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc7 E CD CD . L CD 5028 1_555 K O HOH . L HOH 5039 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc8 F CD CD . L CD 5029 1_555 K O HOH . L HOH 5049 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc9 F CD CD . L CD 5029 1_555 K O HOH . L HOH 5057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc10 F CD CD . L CD 5029 1_555 B NE2 HIS 170 H HIS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.141 ? metalc ? metalc11 C OE1 GLU 84 A GLU 79 1_555 H CD CD . A CD 5028 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc12 C OE2 GLU 86 A GLU 81 1_555 H CD CD . A CD 5028 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc13 C ND1 HIS 98 A HIS 93 4_455 H CD CD . A CD 5028 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc14 C ND2 ASN 143 A ASN 138 1_555 I CD CD . A CD 5029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc15 H CD CD . A CD 5028 1_555 M O HOH . A HOH 5051 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc16 H CD CD . A CD 5028 1_555 M O HOH . A HOH 5055 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc17 H CD CD . A CD 5028 1_555 M O HOH . A HOH 5062 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 3.031 ? metalc ? metalc18 I CD CD . A CD 5029 1_555 M O HOH . A HOH 5059 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.053 ? metalc ? metalc19 I CD CD . A CD 5029 1_555 M O HOH . A HOH 5061 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc20 I CD CD . A CD 5029 1_555 M O HOH . A HOH 5071 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1A4K _atom_sites.fract_transf_matrix[1][1] 0.014427 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010328 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005789 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CD L 1 5028 3 CD CD . F 3 CD L 1 5029 90 CD CD . G 4 FRA H 1 3083 1 FRA FRA . H 3 CD A 1 5028 46 CD CD . I 3 CD A 1 5029 91 CD CD . J 4 FRA B 1 3083 2 FRA FRA . K 5 HOH L 1 5030 10 HOH HOH . K 5 HOH L 2 5031 17 HOH HOH . K 5 HOH L 3 5032 21 HOH HOH . K 5 HOH L 4 5033 38 HOH HOH . K 5 HOH L 5 5034 43 HOH HOH . K 5 HOH L 6 5035 45 HOH HOH . K 5 HOH L 7 5036 48 HOH HOH . K 5 HOH L 8 5037 49 HOH HOH . K 5 HOH L 9 5038 50 HOH HOH . K 5 HOH L 10 5039 53 HOH HOH . K 5 HOH L 11 5040 60 HOH HOH . K 5 HOH L 12 5041 63 HOH HOH . K 5 HOH L 13 5042 67 HOH HOH . K 5 HOH L 14 5043 73 HOH HOH . K 5 HOH L 15 5044 75 HOH HOH . K 5 HOH L 16 5045 79 HOH HOH . K 5 HOH L 17 5046 80 HOH HOH . K 5 HOH L 18 5047 86 HOH HOH . K 5 HOH L 19 5048 87 HOH HOH . K 5 HOH L 20 5049 98 HOH HOH . K 5 HOH L 21 5050 112 HOH HOH . K 5 HOH L 22 5051 123 HOH HOH . K 5 HOH L 23 5052 125 HOH HOH . K 5 HOH L 24 5053 126 HOH HOH . K 5 HOH L 25 5054 131 HOH HOH . K 5 HOH L 26 5055 132 HOH HOH . K 5 HOH L 27 5056 133 HOH HOH . K 5 HOH L 28 5057 134 HOH HOH . K 5 HOH L 29 5058 136 HOH HOH . K 5 HOH L 30 5059 143 HOH HOH . K 5 HOH L 31 5060 144 HOH HOH . K 5 HOH L 32 5061 146 HOH HOH . K 5 HOH L 33 5062 162 HOH HOH . K 5 HOH L 34 5063 164 HOH HOH . K 5 HOH L 35 5064 167 HOH HOH . K 5 HOH L 36 5065 171 HOH HOH . K 5 HOH L 37 5066 174 HOH HOH . K 5 HOH L 38 5067 176 HOH HOH . K 5 HOH L 39 5068 183 HOH HOH . K 5 HOH L 40 5069 184 HOH HOH . K 5 HOH L 41 5070 192 HOH HOH . K 5 HOH L 42 5071 198 HOH HOH . K 5 HOH L 43 5072 200 HOH HOH . K 5 HOH L 44 5073 203 HOH HOH . K 5 HOH L 45 5074 205 HOH HOH . K 5 HOH L 46 5075 206 HOH HOH . K 5 HOH L 47 5076 209 HOH HOH . K 5 HOH L 48 5077 215 HOH HOH . K 5 HOH L 49 5078 216 HOH HOH . K 5 HOH L 50 5079 217 HOH HOH . L 5 HOH H 1 3084 2 HOH HOH . L 5 HOH H 2 3085 4 HOH HOH . L 5 HOH H 3 3086 7 HOH HOH . L 5 HOH H 4 3087 13 HOH HOH . L 5 HOH H 5 3088 14 HOH HOH . L 5 HOH H 6 3089 22 HOH HOH . L 5 HOH H 7 3090 23 HOH HOH . L 5 HOH H 8 3091 24 HOH HOH . L 5 HOH H 9 3092 27 HOH HOH . L 5 HOH H 10 3093 29 HOH HOH . L 5 HOH H 11 3094 33 HOH HOH . L 5 HOH H 12 3095 34 HOH HOH . L 5 HOH H 13 3096 36 HOH HOH . L 5 HOH H 14 3097 37 HOH HOH . L 5 HOH H 15 3098 40 HOH HOH . L 5 HOH H 16 3099 44 HOH HOH . L 5 HOH H 17 3100 47 HOH HOH . L 5 HOH H 18 3101 56 HOH HOH . L 5 HOH H 19 3102 58 HOH HOH . L 5 HOH H 20 3103 61 HOH HOH . L 5 HOH H 21 3104 62 HOH HOH . L 5 HOH H 22 3105 68 HOH HOH . L 5 HOH H 23 3106 76 HOH HOH . L 5 HOH H 24 3107 78 HOH HOH . L 5 HOH H 25 3108 82 HOH HOH . L 5 HOH H 26 3109 84 HOH HOH . L 5 HOH H 27 3110 89 HOH HOH . L 5 HOH H 28 3111 93 HOH HOH . L 5 HOH H 29 3112 94 HOH HOH . L 5 HOH H 30 3113 106 HOH HOH . L 5 HOH H 31 3114 121 HOH HOH . L 5 HOH H 32 3115 128 HOH HOH . L 5 HOH H 33 3116 138 HOH HOH . L 5 HOH H 34 3117 140 HOH HOH . L 5 HOH H 35 3118 147 HOH HOH . L 5 HOH H 36 3119 153 HOH HOH . L 5 HOH H 37 3120 157 HOH HOH . L 5 HOH H 38 3121 158 HOH HOH . L 5 HOH H 39 3122 160 HOH HOH . L 5 HOH H 40 3123 161 HOH HOH . L 5 HOH H 41 3124 169 HOH HOH . L 5 HOH H 42 3125 177 HOH HOH . L 5 HOH H 43 3126 180 HOH HOH . L 5 HOH H 44 3127 188 HOH HOH . L 5 HOH H 45 3128 193 HOH HOH . L 5 HOH H 46 3129 197 HOH HOH . L 5 HOH H 47 3130 201 HOH HOH . L 5 HOH H 48 3131 202 HOH HOH . L 5 HOH H 49 3132 208 HOH HOH . L 5 HOH H 50 3133 212 HOH HOH . L 5 HOH H 51 3134 214 HOH HOH . M 5 HOH A 1 5030 15 HOH HOH . M 5 HOH A 2 5031 16 HOH HOH . M 5 HOH A 3 5032 19 HOH HOH . M 5 HOH A 4 5033 20 HOH HOH . M 5 HOH A 5 5034 28 HOH HOH . M 5 HOH A 6 5035 30 HOH HOH . M 5 HOH A 7 5036 32 HOH HOH . M 5 HOH A 8 5037 35 HOH HOH . M 5 HOH A 9 5038 39 HOH HOH . M 5 HOH A 10 5039 42 HOH HOH . M 5 HOH A 11 5040 51 HOH HOH . M 5 HOH A 12 5041 52 HOH HOH . M 5 HOH A 13 5042 54 HOH HOH . M 5 HOH A 14 5043 55 HOH HOH . M 5 HOH A 15 5044 59 HOH HOH . M 5 HOH A 16 5045 64 HOH HOH . M 5 HOH A 17 5046 65 HOH HOH . M 5 HOH A 18 5047 69 HOH HOH . M 5 HOH A 19 5048 70 HOH HOH . M 5 HOH A 20 5049 71 HOH HOH . M 5 HOH A 21 5050 72 HOH HOH . M 5 HOH A 22 5051 74 HOH HOH . M 5 HOH A 23 5052 81 HOH HOH . M 5 HOH A 24 5053 85 HOH HOH . M 5 HOH A 25 5054 88 HOH HOH . M 5 HOH A 26 5055 92 HOH HOH . M 5 HOH A 27 5056 96 HOH HOH . M 5 HOH A 28 5057 99 HOH HOH . M 5 HOH A 29 5058 101 HOH HOH . M 5 HOH A 30 5059 102 HOH HOH . M 5 HOH A 31 5060 104 HOH HOH . M 5 HOH A 32 5061 105 HOH HOH . M 5 HOH A 33 5062 108 HOH HOH . M 5 HOH A 34 5063 109 HOH HOH . M 5 HOH A 35 5064 111 HOH HOH . M 5 HOH A 36 5065 113 HOH HOH . M 5 HOH A 37 5066 114 HOH HOH . M 5 HOH A 38 5067 115 HOH HOH . M 5 HOH A 39 5068 116 HOH HOH . M 5 HOH A 40 5069 117 HOH HOH . M 5 HOH A 41 5070 118 HOH HOH . M 5 HOH A 42 5071 119 HOH HOH . M 5 HOH A 43 5072 120 HOH HOH . M 5 HOH A 44 5073 122 HOH HOH . M 5 HOH A 45 5074 127 HOH HOH . M 5 HOH A 46 5075 129 HOH HOH . M 5 HOH A 47 5076 130 HOH HOH . M 5 HOH A 48 5077 135 HOH HOH . M 5 HOH A 49 5078 141 HOH HOH . M 5 HOH A 50 5079 145 HOH HOH . M 5 HOH A 51 5080 148 HOH HOH . M 5 HOH A 52 5081 149 HOH HOH . M 5 HOH A 53 5082 150 HOH HOH . M 5 HOH A 54 5083 155 HOH HOH . M 5 HOH A 55 5084 156 HOH HOH . M 5 HOH A 56 5085 159 HOH HOH . M 5 HOH A 57 5086 165 HOH HOH . M 5 HOH A 58 5087 168 HOH HOH . M 5 HOH A 59 5088 170 HOH HOH . M 5 HOH A 60 5089 172 HOH HOH . M 5 HOH A 61 5090 173 HOH HOH . M 5 HOH A 62 5091 178 HOH HOH . M 5 HOH A 63 5092 179 HOH HOH . M 5 HOH A 64 5093 181 HOH HOH . M 5 HOH A 65 5094 185 HOH HOH . M 5 HOH A 66 5095 187 HOH HOH . M 5 HOH A 67 5096 194 HOH HOH . M 5 HOH A 68 5097 196 HOH HOH . M 5 HOH A 69 5098 210 HOH HOH . N 5 HOH B 1 3084 3 HOH HOH . N 5 HOH B 2 3085 5 HOH HOH . N 5 HOH B 3 3086 6 HOH HOH . N 5 HOH B 4 3087 8 HOH HOH . N 5 HOH B 5 3088 9 HOH HOH . N 5 HOH B 6 3089 11 HOH HOH . N 5 HOH B 7 3090 12 HOH HOH . N 5 HOH B 8 3091 18 HOH HOH . N 5 HOH B 9 3092 25 HOH HOH . N 5 HOH B 10 3093 26 HOH HOH . N 5 HOH B 11 3094 31 HOH HOH . N 5 HOH B 12 3095 41 HOH HOH . N 5 HOH B 13 3096 57 HOH HOH . N 5 HOH B 14 3097 66 HOH HOH . N 5 HOH B 15 3098 77 HOH HOH . N 5 HOH B 16 3099 83 HOH HOH . N 5 HOH B 17 3100 95 HOH HOH . N 5 HOH B 18 3101 97 HOH HOH . N 5 HOH B 19 3102 100 HOH HOH . N 5 HOH B 20 3103 103 HOH HOH . N 5 HOH B 21 3104 107 HOH HOH . N 5 HOH B 22 3105 110 HOH HOH . N 5 HOH B 23 3106 124 HOH HOH . N 5 HOH B 24 3107 137 HOH HOH . N 5 HOH B 25 3108 139 HOH HOH . N 5 HOH B 26 3109 142 HOH HOH . N 5 HOH B 27 3110 151 HOH HOH . N 5 HOH B 28 3111 152 HOH HOH . N 5 HOH B 29 3112 154 HOH HOH . N 5 HOH B 30 3113 163 HOH HOH . N 5 HOH B 31 3114 166 HOH HOH . N 5 HOH B 32 3115 175 HOH HOH . N 5 HOH B 33 3116 182 HOH HOH . N 5 HOH B 34 3117 186 HOH HOH . N 5 HOH B 35 3118 189 HOH HOH . N 5 HOH B 36 3119 190 HOH HOH . N 5 HOH B 37 3120 191 HOH HOH . N 5 HOH B 38 3121 195 HOH HOH . N 5 HOH B 39 3122 199 HOH HOH . N 5 HOH B 40 3123 204 HOH HOH . N 5 HOH B 41 3124 207 HOH HOH . N 5 HOH B 42 3125 211 HOH HOH . N 5 HOH B 43 3126 213 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 33.972 _atom_site.Cartn_y 79.502 _atom_site.Cartn_z 1.981 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.41 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 5028 _atom_site.auth_asym_id L _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #