data_1A4R # _model_server_result.job_id KbeBdWdmUaU7lmmDJmva5Q _model_server_result.datetime_utc '2024-12-02 05:38:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a4r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":400}' # _entry.id 1A4R # _exptl.entry_id 1A4R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 442.216 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'AMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1A4R _cell.length_a 98.65 _cell.length_b 98.65 _cell.length_c 104.16 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A4R _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 105 A CYS 105 1_555 A SG CYS 188 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 105 B CYS 305 1_555 B SG CYS 188 B CYS 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A OG1 THR 17 A THR 17 1_555 C MG MG . A MG 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc2 C MG MG . A MG 199 1_555 D O3B GDP . A GDP 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc3 C MG MG . A MG 199 1_555 D O1B GDP . A GDP 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.102 ? metalc ? metalc4 C MG MG . A MG 199 1_555 F O HOH . A HOH 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? metalc ? metalc5 C MG MG . A MG 199 1_555 F O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? metalc ? metalc6 C MG MG . A MG 199 1_555 F O HOH . A HOH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc7 C MG MG . A MG 199 1_555 F O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? # _chem_comp.formula 'C10 H16 N6 O10 P2' _chem_comp.formula_weight 442.216 _chem_comp.id GNH _chem_comp.mon_nstd_flag . _chem_comp.name 'AMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3B PB GNH sing 174 n n N3B HN31 GNH sing 175 n n N3B HN32 GNH sing 176 n n PB O1B GNH doub 177 n n PB O2B GNH sing 178 n n PB O3A GNH sing 179 n n O2B HOB2 GNH sing 180 n n O3A PA GNH sing 181 n n PA O1A GNH doub 182 n n PA O2A GNH sing 183 n n PA O5' GNH sing 184 n n O2A HOA2 GNH sing 185 n n O5' C5' GNH sing 186 n n C5' C4' GNH sing 187 n n C5' "H5'2" GNH sing 188 n n C5' "H5'1" GNH sing 189 n n C4' O4' GNH sing 190 n n C4' C3' GNH sing 191 n n C4' H4' GNH sing 192 n n O4' C1' GNH sing 193 n n C3' O3' GNH sing 194 n n C3' C2' GNH sing 195 n n C3' H3' GNH sing 196 n n O3' HO3' GNH sing 197 n n C2' O2' GNH sing 198 n n C2' C1' GNH sing 199 n n C2' H2' GNH sing 200 n n O2' HO2' GNH sing 201 n n C1' N9 GNH sing 202 n n C1' H1' GNH sing 203 n n N9 C8 GNH sing 204 n y N9 C4 GNH sing 205 n y C8 N7 GNH doub 206 n y C8 H8 GNH sing 207 n n N7 C5 GNH sing 208 n y C5 C6 GNH sing 209 n y C5 C4 GNH doub 210 n y C6 O6 GNH doub 211 n n C6 N1 GNH sing 212 n y N1 C2 GNH sing 213 n y N1 HN1 GNH sing 214 n n C2 N2 GNH sing 215 n n C2 N3 GNH doub 216 n y N2 HN21 GNH sing 217 n n N2 HN22 GNH sing 218 n n N3 C4 GNH sing 219 n y # _atom_sites.entry_id 1A4R _atom_sites.fract_transf_matrix[1][1] 0.010137 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010137 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009601 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 199 199 MG MG . D 3 GDP A 1 200 200 GDP GDP . E 4 GNH B 1 400 400 GNH GNH . F 5 HOH A 1 1000 1000 HOH HOH . F 5 HOH A 2 1001 1001 HOH HOH . F 5 HOH A 3 1002 1002 HOH HOH . F 5 HOH A 4 1003 1003 HOH HOH . F 5 HOH A 5 1004 1004 HOH HOH . F 5 HOH A 6 1005 1005 HOH HOH . F 5 HOH A 7 1006 1006 HOH HOH . F 5 HOH A 8 1007 1007 HOH HOH . F 5 HOH A 9 1008 1008 HOH HOH . F 5 HOH A 10 1009 1009 HOH HOH . F 5 HOH A 11 1010 1010 HOH HOH . F 5 HOH A 12 1011 1011 HOH HOH . F 5 HOH A 13 1012 1012 HOH HOH . F 5 HOH A 14 1013 1013 HOH HOH . F 5 HOH A 15 1014 1014 HOH HOH . F 5 HOH A 16 1016 1016 HOH HOH . F 5 HOH A 17 1017 1017 HOH HOH . F 5 HOH A 18 1018 1018 HOH HOH . F 5 HOH A 19 1019 1019 HOH HOH . F 5 HOH A 20 1020 1020 HOH HOH . F 5 HOH A 21 1021 1021 HOH HOH . F 5 HOH A 22 1022 1022 HOH HOH . F 5 HOH A 23 1023 1023 HOH HOH . F 5 HOH A 24 1024 1024 HOH HOH . F 5 HOH A 25 1026 1026 HOH HOH . F 5 HOH A 26 1027 1027 HOH HOH . F 5 HOH A 27 1031 1031 HOH HOH . F 5 HOH A 28 1032 1032 HOH HOH . F 5 HOH A 29 1033 1033 HOH HOH . F 5 HOH A 30 1034 1034 HOH HOH . F 5 HOH A 31 1035 1035 HOH HOH . F 5 HOH A 32 1036 1036 HOH HOH . F 5 HOH A 33 1037 1037 HOH HOH . F 5 HOH A 34 1038 1038 HOH HOH . F 5 HOH A 35 1040 1040 HOH HOH . F 5 HOH A 36 1041 1041 HOH HOH . F 5 HOH A 37 1042 1042 HOH HOH . F 5 HOH A 38 1043 1043 HOH HOH . F 5 HOH A 39 1044 1044 HOH HOH . F 5 HOH A 40 1045 1045 HOH HOH . F 5 HOH A 41 1046 1046 HOH HOH . F 5 HOH A 42 1047 1047 HOH HOH . F 5 HOH A 43 1048 1048 HOH HOH . F 5 HOH A 44 1049 1049 HOH HOH . F 5 HOH A 45 1050 1050 HOH HOH . F 5 HOH A 46 1051 1051 HOH HOH . F 5 HOH A 47 1052 1052 HOH HOH . F 5 HOH A 48 1053 1053 HOH HOH . G 5 HOH B 1 1015 1015 HOH HOH . G 5 HOH B 2 1025 1025 HOH HOH . G 5 HOH B 3 1028 1028 HOH HOH . G 5 HOH B 4 1029 1029 HOH HOH . G 5 HOH B 5 1030 1030 HOH HOH . G 5 HOH B 6 1039 1039 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3B GNH . . . E 4 102.486 24.87 -2.909 1 74.91 ? N3B GNH 400 B 1 HETATM 2 P PB GNH . . . E 4 101.522 25.886 -2.428 1 79.99 ? PB GNH 400 B 1 HETATM 3 O O1B GNH . . . E 4 100.983 25.47 -1.079 1 81.22 ? O1B GNH 400 B 1 HETATM 4 O O2B GNH . . . E 4 100.35 26.25 -3.273 1 83.73 ? O2B GNH 400 B 1 HETATM 5 O O3A GNH . . . E 4 102.409 27.149 -2.136 1 75.86 ? O3A GNH 400 B 1 HETATM 6 P PA GNH . . . E 4 102.98 27.819 -0.775 1 74.56 ? PA GNH 400 B 1 HETATM 7 O O1A GNH . . . E 4 103.932 26.873 -0.157 1 75.41 ? O1A GNH 400 B 1 HETATM 8 O O2A GNH . . . E 4 101.85 28.318 0.057 1 78.65 ? O2A GNH 400 B 1 HETATM 9 O O5' GNH . . . E 4 103.718 29.017 -1.498 1 68.01 ? O5' GNH 400 B 1 HETATM 10 C C5' GNH . . . E 4 104.864 28.849 -2.367 1 63.25 ? C5' GNH 400 B 1 HETATM 11 C C4' GNH . . . E 4 105.993 29.899 -2.1 1 64.58 ? C4' GNH 400 B 1 HETATM 12 O O4' GNH . . . E 4 105.482 31.183 -2.439 1 66.17 ? O4' GNH 400 B 1 HETATM 13 C C3' GNH . . . E 4 106.463 30.062 -0.657 1 67.53 ? C3' GNH 400 B 1 HETATM 14 O O3' GNH . . . E 4 107.873 30.193 -0.594 1 69.11 ? O3' GNH 400 B 1 HETATM 15 C C2' GNH . . . E 4 105.735 31.266 -0.096 1 70.25 ? C2' GNH 400 B 1 HETATM 16 O O2' GNH . . . E 4 106.298 31.889 1.059 1 71.07 ? O2' GNH 400 B 1 HETATM 17 C C1' GNH . . . E 4 105.582 32.139 -1.349 1 63.62 ? C1' GNH 400 B 1 HETATM 18 N N9 GNH . . . E 4 104.315 32.943 -1.51 1 57.58 ? N9 GNH 400 B 1 HETATM 19 C C8 GNH . . . E 4 103 32.536 -1.354 1 53.81 ? C8 GNH 400 B 1 HETATM 20 N N7 GNH . . . E 4 102.073 33.446 -1.556 1 49.46 ? N7 GNH 400 B 1 HETATM 21 C C5 GNH . . . E 4 102.807 34.596 -1.889 1 50.65 ? C5 GNH 400 B 1 HETATM 22 C C6 GNH . . . E 4 102.366 35.971 -2.236 1 46.44 ? C6 GNH 400 B 1 HETATM 23 O O6 GNH . . . E 4 101.206 36.385 -2.306 1 57.12 ? O6 GNH 400 B 1 HETATM 24 N N1 GNH . . . E 4 103.448 36.888 -2.522 1 40.16 ? N1 GNH 400 B 1 HETATM 25 C C2 GNH . . . E 4 104.839 36.556 -2.481 1 44.85 ? C2 GNH 400 B 1 HETATM 26 N N2 GNH . . . E 4 105.733 37.517 -2.767 1 28.21 ? N2 GNH 400 B 1 HETATM 27 N N3 GNH . . . E 4 105.28 35.271 -2.157 1 48.5 ? N3 GNH 400 B 1 HETATM 28 C C4 GNH . . . E 4 104.205 34.323 -1.866 1 54.57 ? C4 GNH 400 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #