data_1A4Z # _model_server_result.job_id SPshpBDjEam4u_Fiptx46w _model_server_result.datetime_utc '2024-11-08 22:30:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a4z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 1A4Z # _exptl.entry_id 1A4Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1A4Z _cell.length_a 122.6 _cell.length_b 198.4 _cell.length_c 91.6 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A4Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O2A NAD . A NAD 501 1_555 E SM SM . A SM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc2 E SM SM . A SM 502 1_555 M O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc3 H O2A NAD . B NAD 501 1_555 G SM SM . B SM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc4 G SM SM . B SM 502 1_555 N O HOH . B HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc5 J O2A NAD . C NAD 501 1_555 I SM SM . C SM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc6 I SM SM . C SM 502 1_555 O O HOH . C HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc7 L O2A NAD . D NAD 501 1_555 K SM SM . D SM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc8 K SM SM . D SM 502 1_555 P O HOH . D HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 1A4Z _atom_sites.fract_transf_matrix[1][1] 0.008157 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00504 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010917 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SM A 1 502 502 SM SM . F 3 NAD A 1 501 501 NAD NAD . G 2 SM B 1 502 502 SM SM . H 3 NAD B 1 501 501 NAD NAD . I 2 SM C 1 502 502 SM SM . J 3 NAD C 1 501 501 NAD NAD . K 2 SM D 1 502 502 SM SM . L 3 NAD D 1 501 501 NAD NAD . M 4 HOH A 1 503 601 HOH HOH . M 4 HOH A 2 504 602 HOH HOH . M 4 HOH A 3 505 603 HOH HOH . M 4 HOH A 4 506 604 HOH HOH . M 4 HOH A 5 507 605 HOH HOH . M 4 HOH A 6 508 606 HOH HOH . M 4 HOH A 7 509 607 HOH HOH . M 4 HOH A 8 510 608 HOH HOH . M 4 HOH A 9 511 609 HOH HOH . M 4 HOH A 10 512 610 HOH HOH . M 4 HOH A 11 513 611 HOH HOH . M 4 HOH A 12 514 612 HOH HOH . M 4 HOH A 13 515 614 HOH HOH . M 4 HOH A 14 516 615 HOH HOH . M 4 HOH A 15 517 616 HOH HOH . M 4 HOH A 16 518 617 HOH HOH . M 4 HOH A 17 519 618 HOH HOH . M 4 HOH A 18 520 619 HOH HOH . M 4 HOH A 19 521 620 HOH HOH . M 4 HOH A 20 522 621 HOH HOH . M 4 HOH A 21 523 622 HOH HOH . M 4 HOH A 22 524 612 HOH HOH . M 4 HOH A 23 525 613 HOH HOH . M 4 HOH A 24 526 605 HOH HOH . M 4 HOH A 25 527 606 HOH HOH . M 4 HOH A 26 528 607 HOH HOH . N 4 HOH B 1 503 613 HOH HOH . N 4 HOH B 2 504 601 HOH HOH . N 4 HOH B 3 505 602 HOH HOH . N 4 HOH B 4 506 603 HOH HOH . N 4 HOH B 5 507 604 HOH HOH . N 4 HOH B 6 508 605 HOH HOH . N 4 HOH B 7 509 606 HOH HOH . N 4 HOH B 8 510 607 HOH HOH . N 4 HOH B 9 511 608 HOH HOH . N 4 HOH B 10 512 609 HOH HOH . N 4 HOH B 11 513 610 HOH HOH . N 4 HOH B 12 514 611 HOH HOH . N 4 HOH B 13 515 614 HOH HOH . N 4 HOH B 14 516 615 HOH HOH . N 4 HOH B 15 517 616 HOH HOH . N 4 HOH B 16 518 617 HOH HOH . N 4 HOH B 17 519 618 HOH HOH . N 4 HOH B 18 520 619 HOH HOH . N 4 HOH B 19 521 620 HOH HOH . N 4 HOH B 20 522 621 HOH HOH . N 4 HOH B 21 523 622 HOH HOH . N 4 HOH B 22 524 606 HOH HOH . N 4 HOH B 23 525 607 HOH HOH . O 4 HOH C 1 503 601 HOH HOH . O 4 HOH C 2 504 602 HOH HOH . O 4 HOH C 3 505 603 HOH HOH . O 4 HOH C 4 506 604 HOH HOH . O 4 HOH C 5 507 605 HOH HOH . O 4 HOH C 6 508 608 HOH HOH . O 4 HOH C 7 509 609 HOH HOH . O 4 HOH C 8 510 610 HOH HOH . O 4 HOH C 9 511 611 HOH HOH . O 4 HOH C 10 512 612 HOH HOH . O 4 HOH C 11 513 613 HOH HOH . O 4 HOH C 12 514 615 HOH HOH . O 4 HOH C 13 515 616 HOH HOH . O 4 HOH C 14 516 617 HOH HOH . O 4 HOH C 15 517 618 HOH HOH . O 4 HOH C 16 518 619 HOH HOH . O 4 HOH C 17 519 620 HOH HOH . O 4 HOH C 18 520 621 HOH HOH . P 4 HOH D 1 503 614 HOH HOH . P 4 HOH D 2 504 622 HOH HOH . P 4 HOH D 3 505 601 HOH HOH . P 4 HOH D 4 506 602 HOH HOH . P 4 HOH D 5 507 603 HOH HOH . P 4 HOH D 6 508 604 HOH HOH . P 4 HOH D 7 509 608 HOH HOH . P 4 HOH D 8 510 609 HOH HOH . P 4 HOH D 9 511 610 HOH HOH . P 4 HOH D 10 512 611 HOH HOH . P 4 HOH D 11 513 612 HOH HOH . P 4 HOH D 12 514 613 HOH HOH . P 4 HOH D 13 515 614 HOH HOH . P 4 HOH D 14 516 615 HOH HOH . P 4 HOH D 15 517 616 HOH HOH . P 4 HOH D 16 518 617 HOH HOH . P 4 HOH D 17 519 618 HOH HOH . P 4 HOH D 18 520 619 HOH HOH . P 4 HOH D 19 521 620 HOH HOH . P 4 HOH D 20 522 621 HOH HOH . P 4 HOH D 21 523 622 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . F 3 44.008 102.331 5.491 1 11.48 ? PA NAD 501 A 1 HETATM 2 O O1A NAD . . . F 3 43.295 103.14 6.507 1 11.48 ? O1A NAD 501 A 1 HETATM 3 O O2A NAD . . . F 3 42.939 101.407 4.919 1 11.48 ? O2A NAD 501 A 1 HETATM 4 O O5B NAD . . . F 3 45.052 101.397 6.166 1 11.48 ? O5B NAD 501 A 1 HETATM 5 C C5B NAD . . . F 3 46.423 101.88 6.26 1 11.48 ? C5B NAD 501 A 1 HETATM 6 C C4B NAD . . . F 3 47.266 101.038 7.214 1 11.48 ? C4B NAD 501 A 1 HETATM 7 O O4B NAD . . . F 3 46.466 100.713 8.371 1 11.48 ? O4B NAD 501 A 1 HETATM 8 C C3B NAD . . . F 3 47.659 99.689 6.567 1 11.48 ? C3B NAD 501 A 1 HETATM 9 O O3B NAD . . . F 3 48.835 99.182 7.202 1 11.48 ? O3B NAD 501 A 1 HETATM 10 C C2B NAD . . . F 3 46.447 98.835 6.988 1 11.48 ? C2B NAD 501 A 1 HETATM 11 O O2B NAD . . . F 3 46.823 97.458 6.998 1 11.48 ? O2B NAD 501 A 1 HETATM 12 C C1B NAD . . . F 3 46.221 99.3 8.426 1 11.48 ? C1B NAD 501 A 1 HETATM 13 N N9A NAD . . . F 3 44.844 99.042 8.831 1 11.48 ? N9A NAD 501 A 1 HETATM 14 C C8A NAD . . . F 3 43.696 99 8.067 1 11.48 ? C8A NAD 501 A 1 HETATM 15 N N7A NAD . . . F 3 42.548 98.772 8.813 1 11.48 ? N7A NAD 501 A 1 HETATM 16 C C5A NAD . . . F 3 43.035 98.675 10.094 1 11.48 ? C5A NAD 501 A 1 HETATM 17 C C6A NAD . . . F 3 42.336 98.555 11.28 1 11.48 ? C6A NAD 501 A 1 HETATM 18 N N6A NAD . . . F 3 40.998 98.43 11.356 1 11.48 ? N6A NAD 501 A 1 HETATM 19 N N1A NAD . . . F 3 43.05 98.596 12.464 1 11.48 ? N1A NAD 501 A 1 HETATM 20 C C2A NAD . . . F 3 44.427 98.759 12.437 1 11.48 ? C2A NAD 501 A 1 HETATM 21 N N3A NAD . . . F 3 45.143 98.881 11.258 1 11.48 ? N3A NAD 501 A 1 HETATM 22 C C4A NAD . . . F 3 44.385 98.833 10.105 1 11.48 ? C4A NAD 501 A 1 HETATM 23 O O3 NAD . . . F 3 44.79 103.385 4.539 1 11.48 ? O3 NAD 501 A 1 HETATM 24 P PN NAD . . . F 3 45.466 103.158 3.07 1 11.48 ? PN NAD 501 A 1 HETATM 25 O O1N NAD . . . F 3 44.331 102.744 2.145 1 11.48 ? O1N NAD 501 A 1 HETATM 26 O O2N NAD . . . F 3 46.5 102.086 3.026 1 11.48 ? O2N NAD 501 A 1 HETATM 27 O O5D NAD . . . F 3 46.241 104.576 2.492 1 11.48 ? O5D NAD 501 A 1 HETATM 28 C C5D NAD . . . F 3 45.493 105.765 2.003 1 11.48 ? C5D NAD 501 A 1 HETATM 29 C C4D NAD . . . F 3 45.025 106.632 3.179 1 11.48 ? C4D NAD 501 A 1 HETATM 30 O O4D NAD . . . F 3 46.171 107.001 3.981 1 11.48 ? O4D NAD 501 A 1 HETATM 31 C C3D NAD . . . F 3 44.48 108 2.685 1 11.48 ? C3D NAD 501 A 1 HETATM 32 O O3D NAD . . . F 3 43.582 108.556 3.657 1 11.48 ? O3D NAD 501 A 1 HETATM 33 C C2D NAD . . . F 3 45.758 108.855 2.649 1 11.48 ? C2D NAD 501 A 1 HETATM 34 O O2D NAD . . . F 3 45.396 110.241 2.714 1 11.48 ? O2D NAD 501 A 1 HETATM 35 C C1D NAD . . . F 3 46.339 108.42 3.999 1 11.48 ? C1D NAD 501 A 1 HETATM 36 N N1N NAD . . . F 3 47.728 108.876 4.052 1 11.48 ? N1N NAD 501 A 1 HETATM 37 C C2N NAD . . . F 3 48.109 109.728 5.018 1 11.48 ? C2N NAD 501 A 1 HETATM 38 C C3N NAD . . . F 3 49.395 110.162 5.07 1 11.48 ? C3N NAD 501 A 1 HETATM 39 C C7N NAD . . . F 3 49.862 111.021 6.014 1 11.48 ? C7N NAD 501 A 1 HETATM 40 O O7N NAD . . . F 3 51.091 111.124 6.252 1 11.48 ? O7N NAD 501 A 1 HETATM 41 N N7N NAD . . . F 3 49.026 111.787 6.719 1 11.48 ? N7N NAD 501 A 1 HETATM 42 C C4N NAD . . . F 3 50.26 109.729 4.138 1 11.48 ? C4N NAD 501 A 1 HETATM 43 C C5N NAD . . . F 3 49.9 108.881 3.162 1 11.48 ? C5N NAD 501 A 1 HETATM 44 C C6N NAD . . . F 3 48.581 108.45 3.14 1 11.48 ? C6N NAD 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 214 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #