data_1A50 # _model_server_result.job_id qlnrEHilAQnm6XLdOnvZJA _model_server_result.datetime_utc '2024-11-05 00:23:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a50 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":901}' # _entry.id 1A50 # _exptl.entry_id 1A50 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.5 _cell.angle_gamma 90 _cell.entry_id 1A50 _cell.length_a 182.7 _cell.length_b 60.7 _cell.length_c 67.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A50 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 182.7 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B NZ LYS 86 B LYS 87 1_555 E C4A PLP . B PLP 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? metalc ? metalc1 B O GLY 231 B GLY 232 1_555 D NA NA . B NA 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc2 B O PHE 305 B PHE 306 1_555 D NA NA . B NA 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc3 B O SER 307 B SER 308 1_555 D NA NA . B NA 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc4 G O HOH . B HOH 1016 1_555 D NA NA . B NA 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc5 G O HOH . B HOH 1162 1_555 D NA NA . B NA 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 1A50 _atom_sites.fract_transf_matrix[1][1] 0.005473 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000431 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016474 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014861 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FIP A 1 270 270 FIP FIP . D 4 NA B 1 2000 2000 NA NA . E 5 PLP B 1 901 901 PLP PLP . F 6 HOH A 1 1010 1010 HOH HOH . F 6 HOH A 2 1012 1012 HOH HOH . F 6 HOH A 3 1023 1023 HOH HOH . F 6 HOH A 4 1025 1025 HOH HOH . F 6 HOH A 5 1029 1029 HOH HOH . F 6 HOH A 6 1033 1033 HOH HOH . F 6 HOH A 7 1037 1037 HOH HOH . F 6 HOH A 8 1041 1041 HOH HOH . F 6 HOH A 9 1042 1042 HOH HOH . F 6 HOH A 10 1049 1049 HOH HOH . F 6 HOH A 11 1056 1056 HOH HOH . F 6 HOH A 12 1057 1057 HOH HOH . F 6 HOH A 13 1061 1061 HOH HOH . F 6 HOH A 14 1065 1065 HOH HOH . F 6 HOH A 15 1069 1069 HOH HOH . F 6 HOH A 16 1071 1071 HOH HOH . F 6 HOH A 17 1073 1073 HOH HOH . F 6 HOH A 18 1092 1092 HOH HOH . F 6 HOH A 19 1100 1100 HOH HOH . F 6 HOH A 20 1103 1103 HOH HOH . F 6 HOH A 21 1106 1106 HOH HOH . F 6 HOH A 22 1107 1107 HOH HOH . F 6 HOH A 23 1109 1109 HOH HOH . F 6 HOH A 24 1113 1113 HOH HOH . F 6 HOH A 25 1115 1115 HOH HOH . F 6 HOH A 26 1116 1116 HOH HOH . F 6 HOH A 27 1121 1121 HOH HOH . F 6 HOH A 28 1124 1124 HOH HOH . F 6 HOH A 29 1132 1132 HOH HOH . F 6 HOH A 30 1140 1140 HOH HOH . F 6 HOH A 31 1141 1141 HOH HOH . F 6 HOH A 32 1148 1148 HOH HOH . F 6 HOH A 33 1152 1152 HOH HOH . F 6 HOH A 34 1158 1158 HOH HOH . F 6 HOH A 35 1161 1161 HOH HOH . F 6 HOH A 36 1167 1167 HOH HOH . F 6 HOH A 37 1169 1169 HOH HOH . F 6 HOH A 38 1182 1182 HOH HOH . F 6 HOH A 39 1187 1187 HOH HOH . F 6 HOH A 40 1190 1190 HOH HOH . F 6 HOH A 41 1192 1192 HOH HOH . F 6 HOH A 42 1203 1203 HOH HOH . F 6 HOH A 43 1205 1205 HOH HOH . F 6 HOH A 44 1208 1208 HOH HOH . F 6 HOH A 45 1209 1209 HOH HOH . F 6 HOH A 46 1211 1211 HOH HOH . F 6 HOH A 47 1214 1214 HOH HOH . F 6 HOH A 48 1225 1225 HOH HOH . F 6 HOH A 49 1231 1231 HOH HOH . F 6 HOH A 50 1234 1234 HOH HOH . F 6 HOH A 51 1237 1237 HOH HOH . F 6 HOH A 52 1248 1248 HOH HOH . F 6 HOH A 53 1258 1258 HOH HOH . F 6 HOH A 54 1266 1266 HOH HOH . F 6 HOH A 55 1276 1276 HOH HOH . F 6 HOH A 56 1280 1280 HOH HOH . F 6 HOH A 57 1286 1286 HOH HOH . F 6 HOH A 58 1291 1291 HOH HOH . F 6 HOH A 59 1293 1293 HOH HOH . F 6 HOH A 60 1301 1301 HOH HOH . F 6 HOH A 61 1307 1307 HOH HOH . F 6 HOH A 62 1308 1308 HOH HOH . F 6 HOH A 63 1313 1313 HOH HOH . F 6 HOH A 64 1316 1316 HOH HOH . F 6 HOH A 65 1317 1317 HOH HOH . F 6 HOH A 66 1320 1320 HOH HOH . F 6 HOH A 67 1321 1321 HOH HOH . F 6 HOH A 68 1328 1328 HOH HOH . F 6 HOH A 69 1329 1329 HOH HOH . F 6 HOH A 70 1330 1330 HOH HOH . F 6 HOH A 71 1331 1331 HOH HOH . F 6 HOH A 72 1336 1336 HOH HOH . F 6 HOH A 73 1349 1349 HOH HOH . F 6 HOH A 74 1351 1351 HOH HOH . F 6 HOH A 75 1354 1354 HOH HOH . F 6 HOH A 76 1356 1356 HOH HOH . F 6 HOH A 77 1375 1375 HOH HOH . F 6 HOH A 78 1379 1379 HOH HOH . F 6 HOH A 79 1393 1393 HOH HOH . G 6 HOH B 1 1001 1001 HOH HOH . G 6 HOH B 2 1002 1002 HOH HOH . G 6 HOH B 3 1003 1003 HOH HOH . G 6 HOH B 4 1004 1004 HOH HOH . G 6 HOH B 5 1005 1005 HOH HOH . G 6 HOH B 6 1007 1007 HOH HOH . G 6 HOH B 7 1009 1009 HOH HOH . G 6 HOH B 8 1011 1011 HOH HOH . G 6 HOH B 9 1013 1013 HOH HOH . G 6 HOH B 10 1015 1015 HOH HOH . G 6 HOH B 11 1016 1016 HOH HOH . G 6 HOH B 12 1017 1017 HOH HOH . G 6 HOH B 13 1018 1018 HOH HOH . G 6 HOH B 14 1019 1019 HOH HOH . G 6 HOH B 15 1020 1020 HOH HOH . G 6 HOH B 16 1021 1021 HOH HOH . G 6 HOH B 17 1022 1022 HOH HOH . G 6 HOH B 18 1026 1026 HOH HOH . G 6 HOH B 19 1028 1028 HOH HOH . G 6 HOH B 20 1031 1031 HOH HOH . G 6 HOH B 21 1032 1032 HOH HOH . G 6 HOH B 22 1034 1034 HOH HOH . G 6 HOH B 23 1035 1035 HOH HOH . G 6 HOH B 24 1036 1036 HOH HOH . G 6 HOH B 25 1040 1040 HOH HOH . G 6 HOH B 26 1046 1046 HOH HOH . G 6 HOH B 27 1051 1051 HOH HOH . G 6 HOH B 28 1052 1052 HOH HOH . G 6 HOH B 29 1055 1055 HOH HOH . G 6 HOH B 30 1059 1059 HOH HOH . G 6 HOH B 31 1060 1060 HOH HOH . G 6 HOH B 32 1062 1062 HOH HOH . G 6 HOH B 33 1068 1068 HOH HOH . G 6 HOH B 34 1070 1070 HOH HOH . G 6 HOH B 35 1072 1072 HOH HOH . G 6 HOH B 36 1076 1076 HOH HOH . G 6 HOH B 37 1077 1077 HOH HOH . G 6 HOH B 38 1078 1078 HOH HOH . G 6 HOH B 39 1084 1084 HOH HOH . G 6 HOH B 40 1085 1085 HOH HOH . G 6 HOH B 41 1091 1091 HOH HOH . G 6 HOH B 42 1093 1093 HOH HOH . G 6 HOH B 43 1095 1095 HOH HOH . G 6 HOH B 44 1097 1097 HOH HOH . G 6 HOH B 45 1098 1098 HOH HOH . G 6 HOH B 46 1099 1099 HOH HOH . G 6 HOH B 47 1101 1101 HOH HOH . G 6 HOH B 48 1102 1102 HOH HOH . G 6 HOH B 49 1104 1104 HOH HOH . G 6 HOH B 50 1105 1105 HOH HOH . G 6 HOH B 51 1108 1108 HOH HOH . G 6 HOH B 52 1111 1111 HOH HOH . G 6 HOH B 53 1112 1112 HOH HOH . G 6 HOH B 54 1114 1114 HOH HOH . G 6 HOH B 55 1119 1119 HOH HOH . G 6 HOH B 56 1120 1120 HOH HOH . G 6 HOH B 57 1122 1122 HOH HOH . G 6 HOH B 58 1125 1125 HOH HOH . G 6 HOH B 59 1130 1130 HOH HOH . G 6 HOH B 60 1131 1131 HOH HOH . G 6 HOH B 61 1133 1133 HOH HOH . G 6 HOH B 62 1134 1134 HOH HOH . G 6 HOH B 63 1136 1136 HOH HOH . G 6 HOH B 64 1137 1137 HOH HOH . G 6 HOH B 65 1138 1138 HOH HOH . G 6 HOH B 66 1143 1143 HOH HOH . G 6 HOH B 67 1146 1146 HOH HOH . G 6 HOH B 68 1147 1147 HOH HOH . G 6 HOH B 69 1149 1149 HOH HOH . G 6 HOH B 70 1150 1150 HOH HOH . G 6 HOH B 71 1157 1157 HOH HOH . G 6 HOH B 72 1159 1159 HOH HOH . G 6 HOH B 73 1160 1160 HOH HOH . G 6 HOH B 74 1162 1162 HOH HOH . G 6 HOH B 75 1163 1163 HOH HOH . G 6 HOH B 76 1164 1164 HOH HOH . G 6 HOH B 77 1165 1165 HOH HOH . G 6 HOH B 78 1166 1166 HOH HOH . G 6 HOH B 79 1168 1168 HOH HOH . G 6 HOH B 80 1170 1170 HOH HOH . G 6 HOH B 81 1172 1172 HOH HOH . G 6 HOH B 82 1174 1174 HOH HOH . G 6 HOH B 83 1177 1177 HOH HOH . G 6 HOH B 84 1178 1178 HOH HOH . G 6 HOH B 85 1181 1181 HOH HOH . G 6 HOH B 86 1183 1183 HOH HOH . G 6 HOH B 87 1186 1186 HOH HOH . G 6 HOH B 88 1188 1188 HOH HOH . G 6 HOH B 89 1189 1189 HOH HOH . G 6 HOH B 90 1193 1193 HOH HOH . G 6 HOH B 91 1195 1195 HOH HOH . G 6 HOH B 92 1196 1196 HOH HOH . G 6 HOH B 93 1197 1197 HOH HOH . G 6 HOH B 94 1200 1200 HOH HOH . G 6 HOH B 95 1201 1201 HOH HOH . G 6 HOH B 96 1204 1204 HOH HOH . G 6 HOH B 97 1206 1206 HOH HOH . G 6 HOH B 98 1207 1207 HOH HOH . G 6 HOH B 99 1212 1212 HOH HOH . G 6 HOH B 100 1213 1213 HOH HOH . G 6 HOH B 101 1215 1215 HOH HOH . G 6 HOH B 102 1216 1216 HOH HOH . G 6 HOH B 103 1217 1217 HOH HOH . G 6 HOH B 104 1218 1218 HOH HOH . G 6 HOH B 105 1221 1221 HOH HOH . G 6 HOH B 106 1226 1226 HOH HOH . G 6 HOH B 107 1232 1232 HOH HOH . G 6 HOH B 108 1235 1235 HOH HOH . G 6 HOH B 109 1236 1236 HOH HOH . G 6 HOH B 110 1238 1238 HOH HOH . G 6 HOH B 111 1241 1241 HOH HOH . G 6 HOH B 112 1247 1247 HOH HOH . G 6 HOH B 113 1250 1250 HOH HOH . G 6 HOH B 114 1251 1251 HOH HOH . G 6 HOH B 115 1253 1253 HOH HOH . G 6 HOH B 116 1256 1256 HOH HOH . G 6 HOH B 117 1259 1259 HOH HOH . G 6 HOH B 118 1260 1260 HOH HOH . G 6 HOH B 119 1261 1261 HOH HOH . G 6 HOH B 120 1262 1262 HOH HOH . G 6 HOH B 121 1264 1264 HOH HOH . G 6 HOH B 122 1269 1269 HOH HOH . G 6 HOH B 123 1271 1271 HOH HOH . G 6 HOH B 124 1274 1274 HOH HOH . G 6 HOH B 125 1275 1275 HOH HOH . G 6 HOH B 126 1284 1284 HOH HOH . G 6 HOH B 127 1285 1285 HOH HOH . G 6 HOH B 128 1288 1288 HOH HOH . G 6 HOH B 129 1289 1289 HOH HOH . G 6 HOH B 130 1294 1294 HOH HOH . G 6 HOH B 131 1299 1299 HOH HOH . G 6 HOH B 132 1302 1302 HOH HOH . G 6 HOH B 133 1305 1305 HOH HOH . G 6 HOH B 134 1314 1314 HOH HOH . G 6 HOH B 135 1315 1315 HOH HOH . G 6 HOH B 136 1318 1318 HOH HOH . G 6 HOH B 137 1319 1319 HOH HOH . G 6 HOH B 138 1323 1323 HOH HOH . G 6 HOH B 139 1324 1324 HOH HOH . G 6 HOH B 140 1326 1326 HOH HOH . G 6 HOH B 141 1327 1327 HOH HOH . G 6 HOH B 142 1333 1333 HOH HOH . G 6 HOH B 143 1337 1337 HOH HOH . G 6 HOH B 144 1338 1338 HOH HOH . G 6 HOH B 145 1343 1343 HOH HOH . G 6 HOH B 146 1344 1344 HOH HOH . G 6 HOH B 147 1345 1345 HOH HOH . G 6 HOH B 148 1346 1346 HOH HOH . G 6 HOH B 149 1347 1347 HOH HOH . G 6 HOH B 150 1348 1348 HOH HOH . G 6 HOH B 151 1358 1358 HOH HOH . G 6 HOH B 152 1359 1359 HOH HOH . G 6 HOH B 153 1360 1360 HOH HOH . G 6 HOH B 154 1364 1364 HOH HOH . G 6 HOH B 155 1366 1366 HOH HOH . G 6 HOH B 156 1369 1369 HOH HOH . G 6 HOH B 157 1374 1374 HOH HOH . G 6 HOH B 158 1388 1388 HOH HOH . G 6 HOH B 159 1396 1396 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . E 5 84.589 13.928 12.11 1 14.14 ? N1 PLP 901 B 1 HETATM 2 C C2 PLP . . . E 5 84.503 14.242 10.78 1 14.61 ? C2 PLP 901 B 1 HETATM 3 C C2A PLP . . . E 5 85.784 14.259 9.911 1 4.07 ? C2A PLP 901 B 1 HETATM 4 C C3 PLP . . . E 5 83.295 14.59 10.239 1 14.5 ? C3 PLP 901 B 1 HETATM 5 O O3 PLP . . . E 5 83.214 14.903 8.908 1 13.96 ? O3 PLP 901 B 1 HETATM 6 C C4 PLP . . . E 5 82.174 14.638 11.028 1 15.71 ? C4 PLP 901 B 1 HETATM 7 C C4A PLP . . . E 5 80.783 14.92 10.398 1 12.5 ? C4A PLP 901 B 1 HETATM 8 C C5 PLP . . . E 5 82.273 14.349 12.37 1 14.79 ? C5 PLP 901 B 1 HETATM 9 C C6 PLP . . . E 5 83.477 13.986 12.899 1 12.52 ? C6 PLP 901 B 1 HETATM 10 C C5A PLP . . . E 5 81.07 14.546 13.299 1 13.17 ? C5A PLP 901 B 1 HETATM 11 O O4P PLP . . . E 5 79.969 13.72 13.127 1 8.16 ? O4P PLP 901 B 1 HETATM 12 P P PLP . . . E 5 79.631 12.513 13.975 1 9.29 ? P PLP 901 B 1 HETATM 13 O O1P PLP . . . E 5 78.205 12.294 13.551 1 13.58 ? O1P PLP 901 B 1 HETATM 14 O O2P PLP . . . E 5 79.828 12.986 15.365 1 12.31 ? O2P PLP 901 B 1 HETATM 15 O O3P PLP . . . E 5 80.526 11.393 13.525 1 10.9 ? O3P PLP 901 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #