data_1A53 # _model_server_result.job_id sTS-LvQpwDtWd3HkfKYBpw _model_server_result.datetime_utc '2024-11-13 11:07:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a53 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1A53 # _exptl.entry_id 1A53 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 287.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INDOLE-3-GLYCEROL PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1A53 _cell.length_a 57.9 _cell.length_b 73.8 _cell.length_c 104.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A53 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H14 N O6 P' _chem_comp.formula_weight 287.206 _chem_comp.id IGP _chem_comp.mon_nstd_flag . _chem_comp.name 'INDOLE-3-GLYCEROL PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 OP4 IGP sing 118 n n C1 C2 IGP sing 119 n n C1 H11 IGP sing 120 n n C1 H12 IGP sing 121 n n P OP1 IGP sing 122 n n P OP2 IGP sing 123 n n P OP3 IGP doub 124 n n P OP4 IGP sing 125 n n OP1 HOP1 IGP sing 126 n n OP2 HOP2 IGP sing 127 n n C2 O2 IGP sing 128 n n C2 C3 IGP sing 129 n n C2 H2 IGP sing 130 n n O2 HO2 IGP sing 131 n n C3 O3 IGP sing 132 n n C3 CG IGP sing 133 n n C3 H3 IGP sing 134 n n O3 HO3 IGP sing 135 n n CG CD2 IGP sing 136 n y CG CD1 IGP doub 137 n y CD2 CE2 IGP doub 138 n y CD2 CE3 IGP sing 139 n y CE2 NE1 IGP sing 140 n y CE2 CZ2 IGP sing 141 n y CE3 CZ3 IGP doub 142 n y CE3 HE3 IGP sing 143 n n CD1 NE1 IGP sing 144 n y CD1 HD1 IGP sing 145 n n NE1 HN1 IGP sing 146 n n CZ2 CH2 IGP doub 147 n y CZ2 HZ2 IGP sing 148 n n CZ3 CH2 IGP sing 149 n y CZ3 HZ3 IGP sing 150 n n CH2 HH2 IGP sing 151 n n # _atom_sites.entry_id 1A53 _atom_sites.fract_transf_matrix[1][1] 0.017271 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009597 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IGP A 1 300 300 IGP IGP . C 3 HOH A 1 901 901 HOH HOH . C 3 HOH A 2 902 902 HOH HOH . C 3 HOH A 3 903 903 HOH HOH . C 3 HOH A 4 904 904 HOH HOH . C 3 HOH A 5 905 905 HOH HOH . C 3 HOH A 6 906 906 HOH HOH . C 3 HOH A 7 907 907 HOH HOH . C 3 HOH A 8 908 908 HOH HOH . C 3 HOH A 9 909 909 HOH HOH . C 3 HOH A 10 910 910 HOH HOH . C 3 HOH A 11 911 911 HOH HOH . C 3 HOH A 12 912 912 HOH HOH . C 3 HOH A 13 913 913 HOH HOH . C 3 HOH A 14 914 914 HOH HOH . C 3 HOH A 15 915 915 HOH HOH . C 3 HOH A 16 916 916 HOH HOH . C 3 HOH A 17 917 917 HOH HOH . C 3 HOH A 18 918 918 HOH HOH . C 3 HOH A 19 919 919 HOH HOH . C 3 HOH A 20 920 920 HOH HOH . C 3 HOH A 21 921 921 HOH HOH . C 3 HOH A 22 922 922 HOH HOH . C 3 HOH A 23 923 923 HOH HOH . C 3 HOH A 24 924 924 HOH HOH . C 3 HOH A 25 925 925 HOH HOH . C 3 HOH A 26 926 926 HOH HOH . C 3 HOH A 27 927 927 HOH HOH . C 3 HOH A 28 928 928 HOH HOH . C 3 HOH A 29 929 929 HOH HOH . C 3 HOH A 30 930 930 HOH HOH . C 3 HOH A 31 931 931 HOH HOH . C 3 HOH A 32 932 932 HOH HOH . C 3 HOH A 33 934 934 HOH HOH . C 3 HOH A 34 935 935 HOH HOH . C 3 HOH A 35 936 936 HOH HOH . C 3 HOH A 36 939 939 HOH HOH . C 3 HOH A 37 940 940 HOH HOH . C 3 HOH A 38 941 941 HOH HOH . C 3 HOH A 39 942 942 HOH HOH . C 3 HOH A 40 943 943 HOH HOH . C 3 HOH A 41 944 944 HOH HOH . C 3 HOH A 42 945 945 HOH HOH . C 3 HOH A 43 946 946 HOH HOH . C 3 HOH A 44 947 947 HOH HOH . C 3 HOH A 45 948 948 HOH HOH . C 3 HOH A 46 949 949 HOH HOH . C 3 HOH A 47 950 950 HOH HOH . C 3 HOH A 48 951 951 HOH HOH . C 3 HOH A 49 952 952 HOH HOH . C 3 HOH A 50 953 953 HOH HOH . C 3 HOH A 51 954 954 HOH HOH . C 3 HOH A 52 955 955 HOH HOH . C 3 HOH A 53 956 956 HOH HOH . C 3 HOH A 54 957 957 HOH HOH . C 3 HOH A 55 959 959 HOH HOH . C 3 HOH A 56 960 960 HOH HOH . C 3 HOH A 57 961 961 HOH HOH . C 3 HOH A 58 962 962 HOH HOH . C 3 HOH A 59 963 963 HOH HOH . C 3 HOH A 60 965 965 HOH HOH . C 3 HOH A 61 968 968 HOH HOH . C 3 HOH A 62 969 969 HOH HOH . C 3 HOH A 63 970 970 HOH HOH . C 3 HOH A 64 971 971 HOH HOH . C 3 HOH A 65 972 972 HOH HOH . C 3 HOH A 66 974 974 HOH HOH . C 3 HOH A 67 975 975 HOH HOH . C 3 HOH A 68 976 976 HOH HOH . C 3 HOH A 69 977 977 HOH HOH . C 3 HOH A 70 978 978 HOH HOH . C 3 HOH A 71 979 979 HOH HOH . C 3 HOH A 72 980 980 HOH HOH . C 3 HOH A 73 981 981 HOH HOH . C 3 HOH A 74 982 982 HOH HOH . C 3 HOH A 75 983 983 HOH HOH . C 3 HOH A 76 987 987 HOH HOH . C 3 HOH A 77 988 988 HOH HOH . C 3 HOH A 78 989 989 HOH HOH . C 3 HOH A 79 990 990 HOH HOH . C 3 HOH A 80 993 993 HOH HOH . C 3 HOH A 81 995 995 HOH HOH . C 3 HOH A 82 996 996 HOH HOH . C 3 HOH A 83 997 997 HOH HOH . C 3 HOH A 84 998 998 HOH HOH . C 3 HOH A 85 999 999 HOH HOH . C 3 HOH A 86 1000 1000 HOH HOH . C 3 HOH A 87 1008 1008 HOH HOH . C 3 HOH A 88 1009 1009 HOH HOH . C 3 HOH A 89 1010 1010 HOH HOH . C 3 HOH A 90 1012 1012 HOH HOH . C 3 HOH A 91 1013 1013 HOH HOH . C 3 HOH A 92 1018 1018 HOH HOH . C 3 HOH A 93 1020 1020 HOH HOH . C 3 HOH A 94 1023 1023 HOH HOH . C 3 HOH A 95 1024 1024 HOH HOH . C 3 HOH A 96 1026 1026 HOH HOH . C 3 HOH A 97 1027 1027 HOH HOH . C 3 HOH A 98 1028 1028 HOH HOH . C 3 HOH A 99 1029 1029 HOH HOH . C 3 HOH A 100 1031 1031 HOH HOH . C 3 HOH A 101 1032 1032 HOH HOH . C 3 HOH A 102 1033 1033 HOH HOH . C 3 HOH A 103 1034 1034 HOH HOH . C 3 HOH A 104 1036 1036 HOH HOH . C 3 HOH A 105 1042 1042 HOH HOH . C 3 HOH A 106 1043 1043 HOH HOH . C 3 HOH A 107 1051 1051 HOH HOH . C 3 HOH A 108 1053 1053 HOH HOH . C 3 HOH A 109 1054 1054 HOH HOH . C 3 HOH A 110 1055 1055 HOH HOH . C 3 HOH A 111 1056 1056 HOH HOH . C 3 HOH A 112 1057 1057 HOH HOH . C 3 HOH A 113 1059 1059 HOH HOH . C 3 HOH A 114 1060 1060 HOH HOH . C 3 HOH A 115 1061 1061 HOH HOH . C 3 HOH A 116 1062 1062 HOH HOH . C 3 HOH A 117 1063 1063 HOH HOH . C 3 HOH A 118 1064 1064 HOH HOH . C 3 HOH A 119 1066 1066 HOH HOH . C 3 HOH A 120 1069 1069 HOH HOH . C 3 HOH A 121 1070 1070 HOH HOH . C 3 HOH A 122 1072 1072 HOH HOH . C 3 HOH A 123 1078 1078 HOH HOH . C 3 HOH A 124 1085 1085 HOH HOH . C 3 HOH A 125 1086 1086 HOH HOH . C 3 HOH A 126 1089 1089 HOH HOH . C 3 HOH A 127 1091 1091 HOH HOH . C 3 HOH A 128 1092 1092 HOH HOH . C 3 HOH A 129 1095 1095 HOH HOH . C 3 HOH A 130 1096 1096 HOH HOH . C 3 HOH A 131 1100 1100 HOH HOH . C 3 HOH A 132 1101 1101 HOH HOH . C 3 HOH A 133 1102 1102 HOH HOH . C 3 HOH A 134 1103 1103 HOH HOH . C 3 HOH A 135 1113 1113 HOH HOH . C 3 HOH A 136 1114 1114 HOH HOH . C 3 HOH A 137 1115 1115 HOH HOH . C 3 HOH A 138 1116 1116 HOH HOH . C 3 HOH A 139 1117 1117 HOH HOH . C 3 HOH A 140 1118 1118 HOH HOH . C 3 HOH A 141 1119 1119 HOH HOH . C 3 HOH A 142 1120 1120 HOH HOH . C 3 HOH A 143 1121 1121 HOH HOH . C 3 HOH A 144 1122 1122 HOH HOH . C 3 HOH A 145 1123 1123 HOH HOH . C 3 HOH A 146 1124 1124 HOH HOH . C 3 HOH A 147 1125 1125 HOH HOH . C 3 HOH A 148 1126 1126 HOH HOH . C 3 HOH A 149 1128 1128 HOH HOH . C 3 HOH A 150 1133 1133 HOH HOH . C 3 HOH A 151 1134 1134 HOH HOH . C 3 HOH A 152 1136 1136 HOH HOH . C 3 HOH A 153 1137 1137 HOH HOH . C 3 HOH A 154 1138 1138 HOH HOH . C 3 HOH A 155 1139 1139 HOH HOH . C 3 HOH A 156 1140 1140 HOH HOH . C 3 HOH A 157 1142 1142 HOH HOH . C 3 HOH A 158 1146 1146 HOH HOH . C 3 HOH A 159 1147 1147 HOH HOH . C 3 HOH A 160 1148 1148 HOH HOH . C 3 HOH A 161 1154 1154 HOH HOH . C 3 HOH A 162 1157 1157 HOH HOH . C 3 HOH A 163 1166 1166 HOH HOH . C 3 HOH A 164 1167 1167 HOH HOH . C 3 HOH A 165 1168 1168 HOH HOH . C 3 HOH A 166 1170 1170 HOH HOH . C 3 HOH A 167 1171 1171 HOH HOH . C 3 HOH A 168 1174 1174 HOH HOH . C 3 HOH A 169 1176 1176 HOH HOH . C 3 HOH A 170 1177 1177 HOH HOH . C 3 HOH A 171 1178 1178 HOH HOH . C 3 HOH A 172 1179 1179 HOH HOH . C 3 HOH A 173 1180 1180 HOH HOH . C 3 HOH A 174 1181 1181 HOH HOH . C 3 HOH A 175 1183 1183 HOH HOH . C 3 HOH A 176 1187 1187 HOH HOH . C 3 HOH A 177 1188 1188 HOH HOH . C 3 HOH A 178 1190 1190 HOH HOH . C 3 HOH A 179 1194 1194 HOH HOH . C 3 HOH A 180 1195 1195 HOH HOH . C 3 HOH A 181 1196 1196 HOH HOH . C 3 HOH A 182 1197 1197 HOH HOH . C 3 HOH A 183 1199 1199 HOH HOH . C 3 HOH A 184 1200 1200 HOH HOH . C 3 HOH A 185 1201 1201 HOH HOH . C 3 HOH A 186 1202 1202 HOH HOH . C 3 HOH A 187 1204 1204 HOH HOH . C 3 HOH A 188 1207 1207 HOH HOH . C 3 HOH A 189 1208 1208 HOH HOH . C 3 HOH A 190 1209 1209 HOH HOH . C 3 HOH A 191 1214 1214 HOH HOH . C 3 HOH A 192 1215 1215 HOH HOH . C 3 HOH A 193 1216 1216 HOH HOH . C 3 HOH A 194 1218 1218 HOH HOH . C 3 HOH A 195 1219 1219 HOH HOH . C 3 HOH A 196 1220 1220 HOH HOH . C 3 HOH A 197 1221 1221 HOH HOH . C 3 HOH A 198 1222 1222 HOH HOH . C 3 HOH A 199 1223 1223 HOH HOH . C 3 HOH A 200 1229 1229 HOH HOH . C 3 HOH A 201 1230 1230 HOH HOH . C 3 HOH A 202 1232 1232 HOH HOH . C 3 HOH A 203 1237 1237 HOH HOH . C 3 HOH A 204 1238 1238 HOH HOH . C 3 HOH A 205 1239 1239 HOH HOH . C 3 HOH A 206 1243 1243 HOH HOH . C 3 HOH A 207 1244 1244 HOH HOH . C 3 HOH A 208 1245 1245 HOH HOH . C 3 HOH A 209 1249 1249 HOH HOH . C 3 HOH A 210 1253 1253 HOH HOH . C 3 HOH A 211 1255 1255 HOH HOH . C 3 HOH A 212 1256 1256 HOH HOH . C 3 HOH A 213 1257 1257 HOH HOH . C 3 HOH A 214 1258 1258 HOH HOH . C 3 HOH A 215 1259 1259 HOH HOH . C 3 HOH A 216 1260 1260 HOH HOH . C 3 HOH A 217 1263 1263 HOH HOH . C 3 HOH A 218 1264 1264 HOH HOH . C 3 HOH A 219 1266 1266 HOH HOH . C 3 HOH A 220 1267 1267 HOH HOH . C 3 HOH A 221 1268 1268 HOH HOH . C 3 HOH A 222 1272 1272 HOH HOH . C 3 HOH A 223 1275 1275 HOH HOH . C 3 HOH A 224 1276 1276 HOH HOH . C 3 HOH A 225 1290 1290 HOH HOH . C 3 HOH A 226 1300 1300 HOH HOH . C 3 HOH A 227 1302 1302 HOH HOH . C 3 HOH A 228 1307 1307 HOH HOH . C 3 HOH A 229 1309 1309 HOH HOH . C 3 HOH A 230 1310 1310 HOH HOH . C 3 HOH A 231 1311 1311 HOH HOH . C 3 HOH A 232 1312 1312 HOH HOH . C 3 HOH A 233 1313 1313 HOH HOH . C 3 HOH A 234 1314 1314 HOH HOH . C 3 HOH A 235 1315 1315 HOH HOH . C 3 HOH A 236 1316 1316 HOH HOH . C 3 HOH A 237 1317 1317 HOH HOH . C 3 HOH A 238 1318 1318 HOH HOH . C 3 HOH A 239 1319 1319 HOH HOH . C 3 HOH A 240 1320 1320 HOH HOH . C 3 HOH A 241 1321 1321 HOH HOH . C 3 HOH A 242 1322 1322 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IGP . . . B 2 -5.294 -22.151 30.299 1 43.49 ? C1 IGP 300 A 1 HETATM 2 P P IGP . . . B 2 -6.325 -23.154 28.272 1 20.75 ? P IGP 300 A 1 HETATM 3 O OP1 IGP . . . B 2 -6.444 -24.502 28.77 1 19.89 ? OP1 IGP 300 A 1 HETATM 4 O OP2 IGP . . . B 2 -7.499 -22.713 27.515 1 19.76 ? OP2 IGP 300 A 1 HETATM 5 O OP3 IGP . . . B 2 -5.057 -23.031 27.529 1 17.96 ? OP3 IGP 300 A 1 HETATM 6 O OP4 IGP . . . B 2 -6.27 -22.237 29.48 1 29.82 ? OP4 IGP 300 A 1 HETATM 7 C C2 IGP . . . B 2 -5.433 -21.377 31.607 1 50.21 ? C2 IGP 300 A 1 HETATM 8 O O2 IGP . . . B 2 -4.769 -20.084 31.472 1 52.86 ? O2 IGP 300 A 1 HETATM 9 C C3 IGP . . . B 2 -6.798 -21.359 32.214 1 50.79 ? C3 IGP 300 A 1 HETATM 10 O O3 IGP . . . B 2 -6.429 -22.569 32.922 1 60.41 ? O3 IGP 300 A 1 HETATM 11 C CG IGP . . . B 2 -7.086 -20.503 33.396 1 44.22 ? CG IGP 300 A 1 HETATM 12 C CD2 IGP . . . B 2 -7.452 -20.851 34.738 1 40.41 ? CD2 IGP 300 A 1 HETATM 13 C CE2 IGP . . . B 2 -7.284 -19.665 35.522 1 38.19 ? CE2 IGP 300 A 1 HETATM 14 C CE3 IGP . . . B 2 -7.845 -22.041 35.436 1 37.7 ? CE3 IGP 300 A 1 HETATM 15 C CD1 IGP . . . B 2 -6.833 -19.168 33.365 1 41.41 ? CD1 IGP 300 A 1 HETATM 16 N NE1 IGP . . . B 2 -6.934 -18.643 34.651 1 41.81 ? NE1 IGP 300 A 1 HETATM 17 C CZ2 IGP . . . B 2 -7.452 -19.603 36.934 1 30.1 ? CZ2 IGP 300 A 1 HETATM 18 C CZ3 IGP . . . B 2 -8.024 -21.994 36.834 1 32.15 ? CZ3 IGP 300 A 1 HETATM 19 C CH2 IGP . . . B 2 -7.825 -20.77 37.574 1 30.32 ? CH2 IGP 300 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #