data_1A59 # _model_server_result.job_id OKZOOxE9URlti2amW_Q11w _model_server_result.datetime_utc '2024-11-28 02:09:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a59 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":380}' # _entry.id 1A59 # _exptl.entry_id 1A59 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1A59 _cell.length_a 70.8 _cell.length_b 70.8 _cell.length_c 307.8 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A59 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_465 y-1,x+1,-z+2/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -106.2 61.314599 205.2 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 90 n y N1A C6A COA doub 91 n y C2A N3A COA doub 92 n y C2A H2A COA sing 93 n n N3A C4A COA sing 94 n y C4A C5A COA doub 95 n y C4A N9A COA sing 96 n y C5A C6A COA sing 97 n y C5A N7A COA sing 98 n y C6A N6A COA sing 99 n n N6A H61A COA sing 100 n n N6A H62A COA sing 101 n n N7A C8A COA doub 102 n y C8A N9A COA sing 103 n y C8A H8A COA sing 104 n n N9A C1B COA sing 105 n n C1B C2B COA sing 106 n n C1B O4B COA sing 107 n n C1B H1B COA sing 108 n n C2B O2B COA sing 109 n n C2B C3B COA sing 110 n n C2B H2B COA sing 111 n n O2B HO2A COA sing 112 n n C3B O3B COA sing 113 n n C3B C4B COA sing 114 n n C3B H3B COA sing 115 n n O3B P3B COA sing 116 n n P3B O7A COA doub 117 n n P3B O8A COA sing 118 n n P3B O9A COA sing 119 n n O8A HOA8 COA sing 120 n n O9A HOA9 COA sing 121 n n C4B O4B COA sing 122 n n C4B C5B COA sing 123 n n C4B H4B COA sing 124 n n C5B O5B COA sing 125 n n C5B H51A COA sing 126 n n C5B H52A COA sing 127 n n O5B P1A COA sing 128 n n P1A O1A COA doub 129 n n P1A O2A COA sing 130 n n P1A O3A COA sing 131 n n O2A HOA2 COA sing 132 n n O3A P2A COA sing 133 n n P2A O4A COA doub 134 n n P2A O5A COA sing 135 n n P2A O6A COA sing 136 n n O5A HOA5 COA sing 137 n n O6A CCP COA sing 138 n n CBP CCP COA sing 139 n n CBP CDP COA sing 140 n n CBP CEP COA sing 141 n n CBP CAP COA sing 142 n n CCP H121 COA sing 143 n n CCP H122 COA sing 144 n n CDP H131 COA sing 145 n n CDP H132 COA sing 146 n n CDP H133 COA sing 147 n n CEP H141 COA sing 148 n n CEP H142 COA sing 149 n n CEP H143 COA sing 150 n n CAP OAP COA sing 151 n n CAP C9P COA sing 152 n n CAP H10 COA sing 153 n n OAP HO1 COA sing 154 n n C9P O9P COA doub 155 n n C9P N8P COA sing 156 n n N8P C7P COA sing 157 n n N8P HN8 COA sing 158 n n C7P C6P COA sing 159 n n C7P H71 COA sing 160 n n C7P H72 COA sing 161 n n C6P C5P COA sing 162 n n C6P H61 COA sing 163 n n C6P H62 COA sing 164 n n C5P O5P COA doub 165 n n C5P N4P COA sing 166 n n N4P C3P COA sing 167 n n N4P HN4 COA sing 168 n n C3P C2P COA sing 169 n n C3P H31 COA sing 170 n n C3P H32 COA sing 171 n n C2P S1P COA sing 172 n n C2P H21 COA sing 173 n n C2P H22 COA sing 174 n n S1P HS1 COA sing 175 n n # _atom_sites.entry_id 1A59 _atom_sites.fract_transf_matrix[1][1] 0.014124 _atom_sites.fract_transf_matrix[1][2] 0.008155 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016309 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003249 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 380 380 COA COA . C 3 CIT A 1 379 379 CIT CIT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . B 2 -18.026 57.294 86.185 1 15.15 ? N1A COA 380 A 1 HETATM 2 C C2A COA . . . B 2 -17.798 58.285 85.286 1 16.36 ? C2A COA 380 A 1 HETATM 3 N N3A COA . . . B 2 -17.793 59.616 85.548 1 18.13 ? N3A COA 380 A 1 HETATM 4 C C4A COA . . . B 2 -17.927 59.986 86.821 1 18.96 ? C4A COA 380 A 1 HETATM 5 C C5A COA . . . B 2 -18.059 59.008 87.784 1 16.49 ? C5A COA 380 A 1 HETATM 6 C C6A COA . . . B 2 -18.115 57.618 87.478 1 14.2 ? C6A COA 380 A 1 HETATM 7 N N6A COA . . . B 2 -18.257 56.749 88.479 1 10.41 ? N6A COA 380 A 1 HETATM 8 N N7A COA . . . B 2 -18.133 59.45 88.965 1 18.27 ? N7A COA 380 A 1 HETATM 9 C C8A COA . . . B 2 -18.206 60.856 88.826 1 18.37 ? C8A COA 380 A 1 HETATM 10 N N9A COA . . . B 2 -17.972 61.112 87.461 1 21.98 ? N9A COA 380 A 1 HETATM 11 C C1B COA . . . B 2 -17.898 62.38 86.71 1 28.42 ? C1B COA 380 A 1 HETATM 12 C C2B COA . . . B 2 -19.318 62.895 86.37 1 34.87 ? C2B COA 380 A 1 HETATM 13 O O2B COA . . . B 2 -19.856 62.437 85.11 1 37.22 ? O2B COA 380 A 1 HETATM 14 C C3B COA . . . B 2 -19.191 64.424 86.517 1 37.66 ? C3B COA 380 A 1 HETATM 15 O O3B COA . . . B 2 -18.602 64.862 85.286 1 44.82 ? O3B COA 380 A 1 HETATM 16 P P3B COA . . . B 2 -18.614 66.523 84.848 1 51.08 ? P3B COA 380 A 1 HETATM 17 O O7A COA . . . B 2 -19.447 67.322 85.974 1 49.01 ? O7A COA 380 A 1 HETATM 18 O O8A COA . . . B 2 -17.083 67.02 84.796 1 48.49 ? O8A COA 380 A 1 HETATM 19 O O9A COA . . . B 2 -19.325 66.64 83.407 1 49.64 ? O9A COA 380 A 1 HETATM 20 C C4B COA . . . B 2 -18.08 64.608 87.569 1 36.39 ? C4B COA 380 A 1 HETATM 21 O O4B COA . . . B 2 -17.276 63.418 87.495 1 29.12 ? O4B COA 380 A 1 HETATM 22 C C5B COA . . . B 2 -18.632 64.759 88.985 1 39.24 ? C5B COA 380 A 1 HETATM 23 O O5B COA . . . B 2 -19.538 63.681 89.347 1 45.36 ? O5B COA 380 A 1 HETATM 24 P P1A COA . . . B 2 -21.149 63.979 89.682 1 45.79 ? P1A COA 380 A 1 HETATM 25 O O1A COA . . . B 2 -21.433 65.504 89.814 1 48.18 ? O1A COA 380 A 1 HETATM 26 O O2A COA . . . B 2 -22.077 63.319 88.634 1 47.17 ? O2A COA 380 A 1 HETATM 27 O O3A COA . . . B 2 -21.31 63.23 91.131 1 45.22 ? O3A COA 380 A 1 HETATM 28 P P2A COA . . . B 2 -20.712 63.777 92.551 1 36.76 ? P2A COA 380 A 1 HETATM 29 O O4A COA . . . B 2 -21.517 64.997 93.046 1 44.41 ? O4A COA 380 A 1 HETATM 30 O O5A COA . . . B 2 -19.186 64.08 92.445 1 39.9 ? O5A COA 380 A 1 HETATM 31 O O6A COA . . . B 2 -21.009 62.455 93.501 1 38.33 ? O6A COA 380 A 1 HETATM 32 C CBP COA . . . B 2 -21.023 60.012 92.899 1 17.45 ? CBP COA 380 A 1 HETATM 33 C CCP COA . . . B 2 -20.21 61.265 93.361 1 22.44 ? CCP COA 380 A 1 HETATM 34 C CDP COA . . . B 2 -22.52 60.384 92.745 1 17.92 ? CDP COA 380 A 1 HETATM 35 C CEP COA . . . B 2 -20.872 58.919 93.978 1 12.5 ? CEP COA 380 A 1 HETATM 36 C CAP COA . . . B 2 -20.433 59.532 91.528 1 13.79 ? CAP COA 380 A 1 HETATM 37 O OAP COA . . . B 2 -19.002 59.414 91.575 1 13.75 ? OAP COA 380 A 1 HETATM 38 C C9P COA . . . B 2 -21.121 58.256 90.924 1 12.99 ? C9P COA 380 A 1 HETATM 39 O O9P COA . . . B 2 -22.243 58.378 90.338 1 14.42 ? O9P COA 380 A 1 HETATM 40 N N8P COA . . . B 2 -20.494 57.078 91.052 1 9.3 ? N8P COA 380 A 1 HETATM 41 C C7P COA . . . B 2 -21.102 55.84 90.551 1 10.6 ? C7P COA 380 A 1 HETATM 42 C C6P COA . . . B 2 -22.13 55.31 91.565 1 9.49 ? C6P COA 380 A 1 HETATM 43 C C5P COA . . . B 2 -21.402 54.694 92.735 1 10.48 ? C5P COA 380 A 1 HETATM 44 O O5P COA . . . B 2 -20.431 53.915 92.57 1 11.37 ? O5P COA 380 A 1 HETATM 45 N N4P COA . . . B 2 -22.003 54.77 93.887 1 11.69 ? N4P COA 380 A 1 HETATM 46 C C3P COA . . . B 2 -21.274 55.225 95.136 1 12.58 ? C3P COA 380 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 46 #