data_1A5H # _model_server_result.job_id 0M5we26b-u5SQCX3-6i0Lw _model_server_result.datetime_utc '2024-11-26 12:18:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a5h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":250}' # _entry.id 1A5H # _exptl.entry_id 1A5H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 376.495 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,7-BIS-(4-AMIDINOBENZYLIDENE)-CYCLOHEPTAN-1-ONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.5 _cell.angle_gamma 90 _cell.entry_id 1A5H _cell.length_a 151.83 _cell.length_b 60.5 _cell.length_c 62.61 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A5H _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 C CYS 1 1_555 B SG CYS 120 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 B SG CYS 32 A CYS 42 1_555 B SG CYS 48 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 B SG CYS 40 A CYS 50 1_555 B SG CYS 109 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 134 A CYS 136 1_555 B SG CYS 209 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 166 A CYS 168 1_555 B SG CYS 182 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 B SG CYS 199 A CYS 191 1_555 B SG CYS 227 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf7 C SG CYS 2 D CYS 1 1_555 D SG CYS 120 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf8 D SG CYS 32 B CYS 42 1_555 D SG CYS 48 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 D SG CYS 40 B CYS 50 1_555 D SG CYS 109 B CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 D SG CYS 134 B CYS 136 1_555 D SG CYS 209 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 D SG CYS 166 B CYS 168 1_555 D SG CYS 182 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf12 D SG CYS 199 B CYS 191 1_555 D SG CYS 227 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C23 H28 N4 O' _chem_comp.formula_weight 376.495 _chem_comp.id BBA _chem_comp.mon_nstd_flag . _chem_comp.name 2,7-BIS-(4-AMIDINOBENZYLIDENE)-CYCLOHEPTAN-1-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms BIS-BENZAMIDINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C9 BBA sing 70 n n C8 C1 BBA sing 71 n n C8 H81 BBA sing 72 n n C8 H82 BBA sing 73 n n C9 C14 BBA doub 74 n y C9 C10 BBA sing 75 n y C14 C13 BBA sing 76 n y C14 H14 BBA sing 77 n n C13 C12 BBA doub 78 n y C13 H13 BBA sing 79 n n C10 C11 BBA doub 80 n y C10 H10 BBA sing 81 n n C11 C12 BBA sing 82 n y C11 H11 BBA sing 83 n n C12 C15 BBA sing 84 n n C15 N16 BBA sing 85 n n C15 N17 BBA doub 86 n n N16 HG11 BBA sing 87 n n N16 HG12 BBA sing 88 n n N17 HG2 BBA sing 89 n n C18 C19 BBA sing 90 n n C18 C5 BBA sing 91 n n C18 H181 BBA sing 92 n n C18 H182 BBA sing 93 n n C19 C20 BBA doub 94 n y C19 C24 BBA sing 95 n y C20 C21 BBA sing 96 n y C20 H20 BBA sing 97 n n C21 C22 BBA doub 98 n y C21 H21 BBA sing 99 n n C24 C23 BBA doub 100 n y C24 H24 BBA sing 101 n n C23 C22 BBA sing 102 n y C23 H23 BBA sing 103 n n C22 C25 BBA sing 104 n n C25 N26 BBA sing 105 n n C25 N27 BBA doub 106 n n N26 HG31 BBA sing 107 n n N26 HG32 BBA sing 108 n n N27 HG4 BBA sing 109 n n C1 C2 BBA sing 110 n n C1 C6 BBA sing 111 n n C1 H1 BBA sing 112 n n C2 C3 BBA sing 113 n n C2 H21A BBA sing 114 n n C2 H22 BBA sing 115 n n C3 C BBA sing 116 n n C3 H31 BBA sing 117 n n C3 H32 BBA sing 118 n n C C4 BBA sing 119 n n C H1A BBA sing 120 n n C H2 BBA sing 121 n n C4 C5 BBA sing 122 n n C4 H41 BBA sing 123 n n C4 H42 BBA sing 124 n n C5 C6 BBA sing 125 n n C5 H5 BBA sing 126 n n C6 O7 BBA doub 127 n n # _atom_sites.entry_id 1A5H _atom_sites.fract_transf_matrix[1][1] 0.006586 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002463 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 BBA A 1 250 250 BBA BBA . F 3 BBA B 1 250 250 BBA BBA . G 4 HOH C 1 1004 1004 HOH HOH . G 4 HOH C 2 1124 1124 HOH HOH . H 4 HOH A 1 1001 1001 HOH HOH . H 4 HOH A 2 1002 1002 HOH HOH . H 4 HOH A 3 1003 1003 HOH HOH . H 4 HOH A 4 1004 1004 HOH HOH . H 4 HOH A 5 1005 1005 HOH HOH . H 4 HOH A 6 1006 1006 HOH HOH . H 4 HOH A 7 1007 1007 HOH HOH . H 4 HOH A 8 1008 1008 HOH HOH . H 4 HOH A 9 1009 1009 HOH HOH . H 4 HOH A 10 1013 1013 HOH HOH . H 4 HOH A 11 1015 1015 HOH HOH . H 4 HOH A 12 1019 1019 HOH HOH . H 4 HOH A 13 1023 1023 HOH HOH . H 4 HOH A 14 1027 1027 HOH HOH . H 4 HOH A 15 1029 1029 HOH HOH . H 4 HOH A 16 1034 1034 HOH HOH . H 4 HOH A 17 1038 1038 HOH HOH . H 4 HOH A 18 1042 1042 HOH HOH . H 4 HOH A 19 1046 1046 HOH HOH . H 4 HOH A 20 1047 1047 HOH HOH . H 4 HOH A 21 1050 1050 HOH HOH . H 4 HOH A 22 1051 1051 HOH HOH . H 4 HOH A 23 1055 1055 HOH HOH . H 4 HOH A 24 1056 1056 HOH HOH . H 4 HOH A 25 1059 1059 HOH HOH . H 4 HOH A 26 1060 1060 HOH HOH . H 4 HOH A 27 1061 1061 HOH HOH . H 4 HOH A 28 1062 1062 HOH HOH . H 4 HOH A 29 1090 1090 HOH HOH . H 4 HOH A 30 1100 1100 HOH HOH . H 4 HOH A 31 1102 1102 HOH HOH . H 4 HOH A 32 1104 1104 HOH HOH . H 4 HOH A 33 1105 1105 HOH HOH . H 4 HOH A 34 1110 1110 HOH HOH . H 4 HOH A 35 1114 1114 HOH HOH . H 4 HOH A 36 1115 1115 HOH HOH . H 4 HOH A 37 1116 1116 HOH HOH . H 4 HOH A 38 1117 1117 HOH HOH . H 4 HOH A 39 1121 1121 HOH HOH . H 4 HOH A 40 1122 1122 HOH HOH . H 4 HOH A 41 1123 1123 HOH HOH . H 4 HOH A 42 1125 1125 HOH HOH . H 4 HOH A 43 1127 1127 HOH HOH . H 4 HOH A 44 1128 1128 HOH HOH . H 4 HOH A 45 1129 1129 HOH HOH . H 4 HOH A 46 1130 1130 HOH HOH . I 4 HOH D 1 1005 1005 HOH HOH . J 4 HOH B 1 1007 1007 HOH HOH . J 4 HOH B 2 1008 1008 HOH HOH . J 4 HOH B 3 1009 1009 HOH HOH . J 4 HOH B 4 1010 1010 HOH HOH . J 4 HOH B 5 1011 1011 HOH HOH . J 4 HOH B 6 1015 1015 HOH HOH . J 4 HOH B 7 1018 1018 HOH HOH . J 4 HOH B 8 1019 1019 HOH HOH . J 4 HOH B 9 1027 1027 HOH HOH . J 4 HOH B 10 1029 1029 HOH HOH . J 4 HOH B 11 1030 1030 HOH HOH . J 4 HOH B 12 1034 1034 HOH HOH . J 4 HOH B 13 1042 1042 HOH HOH . J 4 HOH B 14 1043 1043 HOH HOH . J 4 HOH B 15 1046 1046 HOH HOH . J 4 HOH B 16 1047 1047 HOH HOH . J 4 HOH B 17 1050 1050 HOH HOH . J 4 HOH B 18 1052 1052 HOH HOH . J 4 HOH B 19 1065 1065 HOH HOH . J 4 HOH B 20 1066 1066 HOH HOH . J 4 HOH B 21 1067 1067 HOH HOH . J 4 HOH B 22 1068 1068 HOH HOH . J 4 HOH B 23 1069 1069 HOH HOH . J 4 HOH B 24 1071 1071 HOH HOH . J 4 HOH B 25 1072 1072 HOH HOH . J 4 HOH B 26 1074 1074 HOH HOH . J 4 HOH B 27 1075 1075 HOH HOH . J 4 HOH B 28 1082 1082 HOH HOH . J 4 HOH B 29 1084 1084 HOH HOH . J 4 HOH B 30 1085 1085 HOH HOH . J 4 HOH B 31 1086 1086 HOH HOH . J 4 HOH B 32 1087 1087 HOH HOH . J 4 HOH B 33 1088 1088 HOH HOH . J 4 HOH B 34 1089 1089 HOH HOH . J 4 HOH B 35 1091 1091 HOH HOH . J 4 HOH B 36 1092 1092 HOH HOH . J 4 HOH B 37 1093 1093 HOH HOH . J 4 HOH B 38 1094 1094 HOH HOH . J 4 HOH B 39 1095 1095 HOH HOH . J 4 HOH B 40 1096 1096 HOH HOH . J 4 HOH B 41 1097 1097 HOH HOH . J 4 HOH B 42 1098 1098 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 BBA . . . F 3 15.668 55.408 30.83 1 9.15 ? C8 BBA 250 B 1 HETATM 2 C C9 BBA . . . F 3 16.958 55.851 30.216 1 9.43 ? C9 BBA 250 B 1 HETATM 3 C C14 BBA . . . F 3 18.235 55.568 30.782 1 8.39 ? C14 BBA 250 B 1 HETATM 4 C C13 BBA . . . F 3 19.422 55.979 30.145 1 7.67 ? C13 BBA 250 B 1 HETATM 5 C C10 BBA . . . F 3 16.921 56.574 28.98 1 9.74 ? C10 BBA 250 B 1 HETATM 6 C C11 BBA . . . F 3 18.129 56.992 28.357 1 9.62 ? C11 BBA 250 B 1 HETATM 7 C C12 BBA . . . F 3 19.403 56.689 28.928 1 6.14 ? C12 BBA 250 B 1 HETATM 8 C C15 BBA . . . F 3 20.675 57.098 28.289 1 5.09 ? C15 BBA 250 B 1 HETATM 9 N N16 BBA . . . F 3 20.759 57.375 26.973 1 5 ? N16 BBA 250 B 1 HETATM 10 N N17 BBA . . . F 3 21.773 57.176 29.014 1 5.96 ? N17 BBA 250 B 1 HETATM 11 C C18 BBA . . . F 3 16.878 50.734 31.893 1 12.56 ? C18 BBA 250 B 1 HETATM 12 C C19 BBA . . . F 3 17.019 49.65 30.882 1 11.21 ? C19 BBA 250 B 1 HETATM 13 C C20 BBA . . . F 3 18.263 48.996 30.749 1 9.33 ? C20 BBA 250 B 1 HETATM 14 C C21 BBA . . . F 3 18.433 47.954 29.806 1 11.44 ? C21 BBA 250 B 1 HETATM 15 C C24 BBA . . . F 3 15.963 49.217 30.041 1 13.15 ? C24 BBA 250 B 1 HETATM 16 C C23 BBA . . . F 3 16.132 48.181 29.093 1 12.17 ? C23 BBA 250 B 1 HETATM 17 C C22 BBA . . . F 3 17.359 47.526 28.95 1 13.26 ? C22 BBA 250 B 1 HETATM 18 C C25 BBA . . . F 3 17.543 46.428 27.944 1 16.91 ? C25 BBA 250 B 1 HETATM 19 N N26 BBA . . . F 3 17.041 46.507 26.703 1 18.01 ? N26 BBA 250 B 1 HETATM 20 N N27 BBA . . . F 3 18.253 45.338 28.264 1 22.05 ? N27 BBA 250 B 1 HETATM 21 C C1 BBA . . . F 3 15.402 54.244 31.454 1 8.95 ? C1 BBA 250 B 1 HETATM 22 C C2 BBA . . . F 3 14.929 54.534 32.894 1 14.67 ? C2 BBA 250 B 1 HETATM 23 C C3 BBA . . . F 3 14.368 53.401 33.752 1 17.3 ? C3 BBA 250 B 1 HETATM 24 C C BBA . . . F 3 13.61 52.339 32.949 1 21.65 ? C BBA 250 B 1 HETATM 25 C C4 BBA . . . F 3 14.497 51.406 32.067 1 22.49 ? C4 BBA 250 B 1 HETATM 26 C C5 BBA . . . F 3 15.983 51.753 31.977 1 16.06 ? C5 BBA 250 B 1 HETATM 27 C C6 BBA . . . F 3 16.269 53.006 31.206 1 11.95 ? C6 BBA 250 B 1 HETATM 28 O O7 BBA . . . F 3 17.125 52.985 30.36 1 12.26 ? O7 BBA 250 B 1 HETATM 29 H HG11 BBA . . . F 3 21.625 57.646 26.556 0 18 ? HG11 BBA 250 B 1 HETATM 30 H HG12 BBA . . . F 3 19.937 57.321 26.401 0 18 ? HG12 BBA 250 B 1 HETATM 31 H HG2 BBA . . . F 3 21.739 56.96 30.004 0 18 ? HG2 BBA 250 B 1 HETATM 32 H HG31 BBA . . . F 3 17.179 45.771 26.035 0 18 ? HG31 BBA 250 B 1 HETATM 33 H HG32 BBA . . . F 3 16.513 47.313 26.429 0 18 ? HG32 BBA 250 B 1 HETATM 34 H HG4 BBA . . . F 3 18.391 44.597 27.612 0 18 ? HG4 BBA 250 B 1 HETATM 35 H HG22 BBA . . . F 3 22.642 57.438 28.606 0 18 ? HG22 BBA 250 B 1 HETATM 36 H HG42 BBA . . . F 3 18.641 45.259 29.19 0 18 ? HG42 BBA 250 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #