data_1A5I # _model_server_result.job_id C0EO2g_idfyijYGqOF2ChA _model_server_result.datetime_utc '2024-10-31 19:29:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a5i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":245}' # _entry.id 1A5I # _exptl.entry_id 1A5I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 395.862 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1A5I _cell.length_a 73.86 _cell.length_b 73.86 _cell.length_c 135.19 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A5I _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 1 1_555 A SG CYS 133 A CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 45 A CYS 42 1_555 A SG CYS 61 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf3 A SG CYS 53 A CYS 50 1_555 A SG CYS 122 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 147 A CYS 136 1_555 A SG CYS 222 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 A SG CYS 179 A CYS 168 1_555 A SG CYS 195 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf6 A SG CYS 212 A CYS 191 1_555 A SG CYS 240 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A NE2 HIS 60 A HIS 57 1_555 B C3 0GJ . A 0GJ 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? covale ? covale2 A OG SER 216 A SER 195 1_555 B C2 0GJ . A 0GJ 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? # _chem_comp.formula 'C14 H28 Cl N6 O5 1' _chem_comp.formula_weight 395.862 _chem_comp.id 0GJ _chem_comp.mon_nstd_flag . _chem_comp.name L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA 0GJ sing 1 n n N H 0GJ sing 2 n n N H2 0GJ sing 3 n n CA C 0GJ sing 4 n n CA CB 0GJ sing 5 n n CA HA 0GJ sing 6 n n C O 0GJ doub 7 n n C N1 0GJ sing 8 n n CB CG 0GJ sing 9 n n CB HB2 0GJ sing 10 n n CB HB3 0GJ sing 11 n n CG CD 0GJ sing 12 n n CG HG2 0GJ sing 13 n n CG HG3 0GJ sing 14 n n CD OE1 0GJ doub 15 n n CD OE2 0GJ sing 16 n n OE2 HE2 0GJ sing 17 n n N1 CA1 0GJ sing 18 n n N1 H1 0GJ sing 19 n n CA1 C1 0GJ sing 20 n n CA1 HA2 0GJ sing 21 n n CA1 HA3 0GJ sing 22 n n C1 O1 0GJ doub 23 n n C1 N2 0GJ sing 24 n n N2 CA2 0GJ sing 25 n n N2 H3 0GJ sing 26 n n CA2 C2 0GJ sing 27 n n CA2 CB1 0GJ sing 28 n n CA2 HA1 0GJ sing 29 n n C2 O2 0GJ sing 30 n n C2 C3 0GJ sing 31 n n CB1 CG1 0GJ sing 32 n n CB1 HB21 0GJ sing 33 n n CB1 HB31 0GJ sing 34 n n CG1 CD1 0GJ sing 35 n n CG1 HG21 0GJ sing 36 n n CG1 HG31 0GJ sing 37 n n CD1 NE 0GJ sing 38 n n CD1 HD2 0GJ sing 39 n n CD1 HD3 0GJ sing 40 n n NE CZ 0GJ sing 41 n n NE HE 0GJ sing 42 n n CZ NH1 0GJ sing 43 n n CZ NH2 0GJ doub 44 n n NH1 HH11 0GJ sing 45 n n NH1 HH12 0GJ sing 46 n n NH2 HH21 0GJ sing 47 n n NH2 HH22 0GJ sing 48 n n C3 H11 0GJ sing 49 n n C3 H21 0GJ sing 50 n n CL C3 0GJ sing 51 n n C2 H27 0GJ sing 52 n n O2 H28 0GJ sing 53 n n # _atom_sites.entry_id 1A5I _atom_sites.fract_transf_matrix[1][1] 0.013539 _atom_sites.fract_transf_matrix[1][2] 0.007817 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015634 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007397 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0GJ A 1 245 1 0GJ GLU . C 3 HOH A 1 506 506 HOH HOH . C 3 HOH A 2 518 518 HOH HOH . C 3 HOH A 3 541 541 HOH HOH . C 3 HOH A 4 567 567 HOH HOH . C 3 HOH A 5 568 568 HOH HOH . C 3 HOH A 6 569 569 HOH HOH . C 3 HOH A 7 570 570 HOH HOH . C 3 HOH A 8 572 572 HOH HOH . C 3 HOH A 9 574 574 HOH HOH . C 3 HOH A 10 575 575 HOH HOH . C 3 HOH A 11 576 576 HOH HOH . C 3 HOH A 12 621 621 HOH HOH . C 3 HOH A 13 623 623 HOH HOH . C 3 HOH A 14 624 624 HOH HOH . C 3 HOH A 15 626 626 HOH HOH . C 3 HOH A 16 635 635 HOH HOH . C 3 HOH A 17 645 645 HOH HOH . C 3 HOH A 18 650 650 HOH HOH . C 3 HOH A 19 654 654 HOH HOH . C 3 HOH A 20 681 681 HOH HOH . C 3 HOH A 21 682 682 HOH HOH . C 3 HOH A 22 685 685 HOH HOH . C 3 HOH A 23 686 686 HOH HOH . C 3 HOH A 24 687 687 HOH HOH . C 3 HOH A 25 688 688 HOH HOH . C 3 HOH A 26 689 689 HOH HOH . C 3 HOH A 27 690 690 HOH HOH . C 3 HOH A 28 691 691 HOH HOH . C 3 HOH A 29 692 692 HOH HOH . C 3 HOH A 30 693 693 HOH HOH . C 3 HOH A 31 694 694 HOH HOH . C 3 HOH A 32 696 696 HOH HOH . C 3 HOH A 33 698 698 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 0GJ . . . B 2 33.668 45.866 41.17 1 40.86 ? N 0GJ 245 A 1 HETATM 2 C CA 0GJ . . . B 2 33.265 44.911 42.247 1 40.68 ? CA 0GJ 245 A 1 HETATM 3 C C 0GJ . . . B 2 34.46 43.988 42.518 1 37.18 ? C 0GJ 245 A 1 HETATM 4 O O 0GJ . . . B 2 35.052 43.476 41.572 1 40.66 ? O 0GJ 245 A 1 HETATM 5 C CB 0GJ . . . B 2 32.082 44.061 41.768 1 43.3 ? CB 0GJ 245 A 1 HETATM 6 C CG 0GJ . . . B 2 31.101 44.797 40.86 1 55.28 ? CG 0GJ 245 A 1 HETATM 7 C CD 0GJ . . . B 2 30.481 43.903 39.783 1 62.31 ? CD 0GJ 245 A 1 HETATM 8 O OE1 0GJ . . . B 2 30.161 42.721 40.076 1 65.46 ? OE1 0GJ 245 A 1 HETATM 9 O OE2 0GJ . . . B 2 30.312 44.394 38.639 1 61.92 ? OE2 0GJ 245 A 1 HETATM 10 N N1 0GJ . . . B 2 34.851 43.824 43.783 1 31.04 ? N1 0GJ 245 A 1 HETATM 11 C CA1 0GJ . . . B 2 35.956 42.938 44.101 1 23.99 ? CA1 0GJ 245 A 1 HETATM 12 C C1 0GJ . . . B 2 35.522 41.519 43.78 1 20.67 ? C1 0GJ 245 A 1 HETATM 13 O O1 0GJ . . . B 2 34.332 41.275 43.636 1 19.41 ? O1 0GJ 245 A 1 HETATM 14 N N2 0GJ . . . B 2 36.471 40.606 43.598 1 19.96 ? N2 0GJ 245 A 1 HETATM 15 C CA2 0GJ . . . B 2 36.159 39.206 43.293 1 15.26 ? CA2 0GJ 245 A 1 HETATM 16 C C2 0GJ . . . B 2 36.851 38.447 44.388 1 14.79 ? C2 0GJ 245 A 1 HETATM 17 O O2 0GJ . . . B 2 36.448 37.108 44.124 1 16.75 ? O2 0GJ 245 A 1 HETATM 18 C CB1 0GJ . . . B 2 36.76 38.773 41.943 1 12.43 ? CB1 0GJ 245 A 1 HETATM 19 C CG1 0GJ . . . B 2 36.165 39.465 40.73 1 15.97 ? CG1 0GJ 245 A 1 HETATM 20 C CD1 0GJ . . . B 2 37.165 39.564 39.612 1 15.78 ? CD1 0GJ 245 A 1 HETATM 21 N NE 0GJ . . . B 2 36.673 40.345 38.474 1 20.67 ? NE 0GJ 245 A 1 HETATM 22 C CZ 0GJ . . . B 2 37.3 40.414 37.299 1 22.46 ? CZ 0GJ 245 A 1 HETATM 23 N NH1 0GJ . . . B 2 38.447 39.767 37.105 1 28.24 ? NH1 0GJ 245 A 1 HETATM 24 N NH2 0GJ . . . B 2 36.738 41.038 36.28 1 25.12 ? NH2 0GJ 245 A 1 HETATM 25 C C3 0GJ . . . B 2 36.51 39.013 45.772 1 15.67 ? C3 0GJ 245 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #