data_1A5S
#
_model_server_result.job_id            1HhVxGdSyG2_mmHY8PvszQ 
_model_server_result.datetime_utc      '2024-11-23 21:52:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1a5s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":902}' 
#
_entry.id    1A5S 
#
_exptl.entry_id    1A5S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              105.093 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SERINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.6 
_cell.angle_gamma         90 
_cell.entry_id            1A5S 
_cell.length_a            182.7 
_cell.length_b            60.8 
_cell.length_c            67.5 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1A5S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 182.7 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 E C4A PLP . B PLP 901 1_555 F N SER . B SER 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
metalc ? metalc1 B O GLY 232 B GLY 232 1_555 D NA NA . B NA 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc2 B O PHE 306 B PHE 306 1_555 D NA NA . B NA 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc3 B O SER 308 B SER 308 1_555 D NA NA . B NA 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? 
metalc ? metalc4 H O HOH . B HOH 1055 1_555 D NA NA . B NA 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? 
#
_chem_comp.formula           'C3 H7 N O3' 
_chem_comp.formula_weight    105.093 
_chem_comp.id                SER 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              SERINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SER sing 335 n n 
N H SER sing 336 n n 
N H2 SER sing 337 n n 
CA C SER sing 338 n n 
CA CB SER sing 339 n n 
CA HA SER sing 340 n n 
C O SER doub 341 n n 
C OXT SER sing 342 n n 
CB OG SER sing 343 n n 
CB HB2 SER sing 344 n n 
CB HB3 SER sing 345 n n 
OG HG SER sing 346 n n 
OXT HXT SER sing 347 n n 
#
_atom_sites.entry_id                     1A5S 
_atom_sites.fract_transf_matrix[1][1]    0.005473 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00044 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016447 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014863 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 FIP A 1 270 270 FIP FIP . 
D 4 NA B 1 2000 2000 NA NA . 
E 5 PLP B 1 901 901 PLP PLP . 
F 6 SER B 1 902 902 SER SER . 
G 7 HOH A 1 1003 1003 HOH HOH . 
G 7 HOH A 2 1009 1009 HOH HOH . 
G 7 HOH A 3 1012 1012 HOH HOH . 
G 7 HOH A 4 1018 1018 HOH HOH . 
G 7 HOH A 5 1024 1024 HOH HOH . 
G 7 HOH A 6 1030 1030 HOH HOH . 
G 7 HOH A 7 1036 1036 HOH HOH . 
G 7 HOH A 8 1042 1042 HOH HOH . 
G 7 HOH A 9 1046 1046 HOH HOH . 
G 7 HOH A 10 1050 1050 HOH HOH . 
G 7 HOH A 11 1058 1058 HOH HOH . 
G 7 HOH A 12 1061 1061 HOH HOH . 
G 7 HOH A 13 1066 1066 HOH HOH . 
G 7 HOH A 14 1068 1068 HOH HOH . 
G 7 HOH A 15 1074 1074 HOH HOH . 
G 7 HOH A 16 1082 1082 HOH HOH . 
G 7 HOH A 17 1086 1086 HOH HOH . 
G 7 HOH A 18 1088 1088 HOH HOH . 
G 7 HOH A 19 1090 1090 HOH HOH . 
G 7 HOH A 20 1091 1091 HOH HOH . 
G 7 HOH A 21 1093 1093 HOH HOH . 
G 7 HOH A 22 1097 1097 HOH HOH . 
G 7 HOH A 23 1102 1102 HOH HOH . 
G 7 HOH A 24 1104 1104 HOH HOH . 
G 7 HOH A 25 1115 1115 HOH HOH . 
G 7 HOH A 26 1119 1119 HOH HOH . 
G 7 HOH A 27 1121 1121 HOH HOH . 
G 7 HOH A 28 1122 1122 HOH HOH . 
G 7 HOH A 29 1128 1128 HOH HOH . 
G 7 HOH A 30 1129 1129 HOH HOH . 
G 7 HOH A 31 1131 1131 HOH HOH . 
G 7 HOH A 32 1144 1144 HOH HOH . 
H 7 HOH B 1 1001 1001 HOH HOH . 
H 7 HOH B 2 1002 1002 HOH HOH . 
H 7 HOH B 3 1010 1010 HOH HOH . 
H 7 HOH B 4 1011 1011 HOH HOH . 
H 7 HOH B 5 1013 1013 HOH HOH . 
H 7 HOH B 6 1014 1014 HOH HOH . 
H 7 HOH B 7 1015 1015 HOH HOH . 
H 7 HOH B 8 1016 1016 HOH HOH . 
H 7 HOH B 9 1017 1017 HOH HOH . 
H 7 HOH B 10 1019 1019 HOH HOH . 
H 7 HOH B 11 1020 1020 HOH HOH . 
H 7 HOH B 12 1023 1023 HOH HOH . 
H 7 HOH B 13 1025 1025 HOH HOH . 
H 7 HOH B 14 1027 1027 HOH HOH . 
H 7 HOH B 15 1028 1028 HOH HOH . 
H 7 HOH B 16 1029 1029 HOH HOH . 
H 7 HOH B 17 1031 1031 HOH HOH . 
H 7 HOH B 18 1032 1032 HOH HOH . 
H 7 HOH B 19 1033 1033 HOH HOH . 
H 7 HOH B 20 1034 1034 HOH HOH . 
H 7 HOH B 21 1038 1038 HOH HOH . 
H 7 HOH B 22 1039 1039 HOH HOH . 
H 7 HOH B 23 1041 1041 HOH HOH . 
H 7 HOH B 24 1043 1043 HOH HOH . 
H 7 HOH B 25 1044 1044 HOH HOH . 
H 7 HOH B 26 1048 1048 HOH HOH . 
H 7 HOH B 27 1051 1051 HOH HOH . 
H 7 HOH B 28 1052 1052 HOH HOH . 
H 7 HOH B 29 1053 1053 HOH HOH . 
H 7 HOH B 30 1054 1054 HOH HOH . 
H 7 HOH B 31 1055 1055 HOH HOH . 
H 7 HOH B 32 1056 1056 HOH HOH . 
H 7 HOH B 33 1057 1057 HOH HOH . 
H 7 HOH B 34 1059 1059 HOH HOH . 
H 7 HOH B 35 1060 1060 HOH HOH . 
H 7 HOH B 36 1063 1063 HOH HOH . 
H 7 HOH B 37 1065 1065 HOH HOH . 
H 7 HOH B 38 1067 1067 HOH HOH . 
H 7 HOH B 39 1070 1070 HOH HOH . 
H 7 HOH B 40 1071 1071 HOH HOH . 
H 7 HOH B 41 1072 1072 HOH HOH . 
H 7 HOH B 42 1073 1073 HOH HOH . 
H 7 HOH B 43 1075 1075 HOH HOH . 
H 7 HOH B 44 1076 1076 HOH HOH . 
H 7 HOH B 45 1080 1080 HOH HOH . 
H 7 HOH B 46 1081 1081 HOH HOH . 
H 7 HOH B 47 1083 1083 HOH HOH . 
H 7 HOH B 48 1084 1084 HOH HOH . 
H 7 HOH B 49 1085 1085 HOH HOH . 
H 7 HOH B 50 1087 1087 HOH HOH . 
H 7 HOH B 51 1089 1089 HOH HOH . 
H 7 HOH B 52 1094 1094 HOH HOH . 
H 7 HOH B 53 1095 1095 HOH HOH . 
H 7 HOH B 54 1096 1096 HOH HOH . 
H 7 HOH B 55 1099 1099 HOH HOH . 
H 7 HOH B 56 1100 1100 HOH HOH . 
H 7 HOH B 57 1106 1106 HOH HOH . 
H 7 HOH B 58 1110 1110 HOH HOH . 
H 7 HOH B 59 1111 1111 HOH HOH . 
H 7 HOH B 60 1112 1112 HOH HOH . 
H 7 HOH B 61 1113 1113 HOH HOH . 
H 7 HOH B 62 1114 1114 HOH HOH . 
H 7 HOH B 63 1116 1116 HOH HOH . 
H 7 HOH B 64 1117 1117 HOH HOH . 
H 7 HOH B 65 1118 1118 HOH HOH . 
H 7 HOH B 66 1120 1120 HOH HOH . 
H 7 HOH B 67 1124 1124 HOH HOH . 
H 7 HOH B 68 1125 1125 HOH HOH . 
H 7 HOH B 69 1126 1126 HOH HOH . 
H 7 HOH B 70 1127 1127 HOH HOH . 
H 7 HOH B 71 1130 1130 HOH HOH . 
H 7 HOH B 72 1132 1132 HOH HOH . 
H 7 HOH B 73 1133 1133 HOH HOH . 
H 7 HOH B 74 1134 1134 HOH HOH . 
H 7 HOH B 75 1135 1135 HOH HOH . 
H 7 HOH B 76 1136 1136 HOH HOH . 
H 7 HOH B 77 1137 1137 HOH HOH . 
H 7 HOH B 78 1138 1138 HOH HOH . 
H 7 HOH B 79 1139 1139 HOH HOH . 
H 7 HOH B 80 1141 1141 HOH HOH . 
H 7 HOH B 81 1145 1145 HOH HOH . 
H 7 HOH B 82 1147 1147 HOH HOH . 
H 7 HOH B 83 1151 1151 HOH HOH . 
H 7 HOH B 84 1152 1152 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SER . . . F 6 80.258 16.439 10.096 1 32.58 ? N SER 902 B 1 
HETATM 2 C CA SER . . . F 6 79.27 17.513 10.009 1 35.01 ? CA SER 902 B 1 
HETATM 3 C C SER . . . F 6 78.618 17.829 8.675 1 38.36 ? C SER 902 B 1 
HETATM 4 O O SER . . . F 6 79.236 18.583 7.9 1 47.37 ? O SER 902 B 1 
HETATM 5 C CB SER . . . F 6 78.892 18.329 11.244 1 23.08 ? CB SER 902 B 1 
HETATM 6 O OXT SER . . . F 6 77.5 17.326 8.432 1 46.25 ? OXT SER 902 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           221 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#