data_1A5V # _model_server_result.job_id -adSeOd787sFltvg2MdU0w _model_server_result.datetime_utc '2025-03-06 04:02:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a5v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 1A5V # _exptl.entry_id 1A5V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 361.348 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-ACETYLAMINO-5-HYDROXYNAPHTHALENE-2,7-DISULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1A5V _cell.length_a 66.444 _cell.length_b 66.444 _cell.length_c 81.065 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A5V _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1,2 A,B,C,D 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 81.065 3 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+3/2 0 -1 0 -1 0 0 0 0 -1 66.444 66.444 121.5975 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B MN MN . A MN 2 1_555 A OD1 ASP 13 A ASP 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc2 B MN MN . A MN 2 1_555 A OD2 ASP 70 A ASP 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc3 B MN MN . A MN 2 1_555 D O HOH . A HOH 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc4 B MN MN . A MN 2 1_555 D O HOH . A HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc5 B MN MN . A MN 2 1_555 D O HOH . A HOH 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc6 B MN MN . A MN 2 1_555 D O HOH . A HOH 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? # _chem_comp.formula 'C12 H11 N O8 S2' _chem_comp.formula_weight 361.348 _chem_comp.id Y3 _chem_comp.mon_nstd_flag . _chem_comp.name '4-ACETYLAMINO-5-HYDROXYNAPHTHALENE-2,7-DISULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 Y3 doub 376 n y C1 C6 Y3 sing 377 n y C1 O23 Y3 sing 378 n n C2 C3 Y3 sing 379 n y C2 H2 Y3 sing 380 n n C3 C4 Y3 doub 381 n y C3 S11 Y3 sing 382 n n C4 C5 Y3 sing 383 n y C4 H4 Y3 sing 384 n n C5 C6 Y3 doub 385 n y C5 C10 Y3 sing 386 n y C6 C7 Y3 sing 387 n y C7 C8 Y3 doub 388 n y C7 N15 Y3 sing 389 n n C8 C9 Y3 sing 390 n y C8 H8 Y3 sing 391 n n C9 C10 Y3 doub 392 n y C9 S19 Y3 sing 393 n n C10 H10 Y3 sing 394 n n S11 O12 Y3 doub 395 n n S11 O13 Y3 doub 396 n n S11 O14 Y3 sing 397 n n O14 HO4 Y3 sing 398 n n N15 C16 Y3 sing 399 n n N15 HN5 Y3 sing 400 n n C16 O17 Y3 doub 401 n n C16 C18 Y3 sing 402 n n C18 H181 Y3 sing 403 n n C18 H182 Y3 sing 404 n n C18 H183 Y3 sing 405 n n S19 O20 Y3 doub 406 n n S19 O21 Y3 doub 407 n n S19 O22 Y3 sing 408 n n O22 HO2 Y3 sing 409 n n O23 HO3 Y3 sing 410 n n # _atom_sites.entry_id 1A5V _atom_sites.fract_transf_matrix[1][1] 0.01505 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012336 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 2 2 MN MN . C 3 Y3 A 1 1 1 Y3 Y3 . D 4 HOH A 1 210 3 HOH HOH . D 4 HOH A 2 211 4 HOH HOH . D 4 HOH A 3 212 5 HOH HOH . D 4 HOH A 4 213 6 HOH HOH . D 4 HOH A 5 214 7 HOH HOH . D 4 HOH A 6 215 8 HOH HOH . D 4 HOH A 7 216 9 HOH HOH . D 4 HOH A 8 217 10 HOH HOH . D 4 HOH A 9 218 11 HOH HOH . D 4 HOH A 10 219 12 HOH HOH . D 4 HOH A 11 220 13 HOH HOH . D 4 HOH A 12 221 14 HOH HOH . D 4 HOH A 13 222 15 HOH HOH . D 4 HOH A 14 223 16 HOH HOH . D 4 HOH A 15 224 17 HOH HOH . D 4 HOH A 16 225 18 HOH HOH . D 4 HOH A 17 226 19 HOH HOH . D 4 HOH A 18 227 20 HOH HOH . D 4 HOH A 19 228 21 HOH HOH . D 4 HOH A 20 229 22 HOH HOH . D 4 HOH A 21 230 23 HOH HOH . D 4 HOH A 22 231 24 HOH HOH . D 4 HOH A 23 232 25 HOH HOH . D 4 HOH A 24 233 26 HOH HOH . D 4 HOH A 25 234 27 HOH HOH . D 4 HOH A 26 235 28 HOH HOH . D 4 HOH A 27 236 29 HOH HOH . D 4 HOH A 28 237 30 HOH HOH . D 4 HOH A 29 238 31 HOH HOH . D 4 HOH A 30 239 32 HOH HOH . D 4 HOH A 31 240 33 HOH HOH . D 4 HOH A 32 241 34 HOH HOH . D 4 HOH A 33 242 35 HOH HOH . D 4 HOH A 34 243 36 HOH HOH . D 4 HOH A 35 244 37 HOH HOH . D 4 HOH A 36 245 38 HOH HOH . D 4 HOH A 37 246 39 HOH HOH . D 4 HOH A 38 247 40 HOH HOH . D 4 HOH A 39 248 41 HOH HOH . D 4 HOH A 40 249 42 HOH HOH . D 4 HOH A 41 250 43 HOH HOH . D 4 HOH A 42 251 44 HOH HOH . D 4 HOH A 43 252 45 HOH HOH . D 4 HOH A 44 253 46 HOH HOH . D 4 HOH A 45 254 47 HOH HOH . D 4 HOH A 46 255 48 HOH HOH . D 4 HOH A 47 256 49 HOH HOH . D 4 HOH A 48 257 50 HOH HOH . D 4 HOH A 49 258 51 HOH HOH . D 4 HOH A 50 259 52 HOH HOH . D 4 HOH A 51 260 53 HOH HOH . D 4 HOH A 52 261 54 HOH HOH . D 4 HOH A 53 262 55 HOH HOH . D 4 HOH A 54 263 56 HOH HOH . D 4 HOH A 55 264 57 HOH HOH . D 4 HOH A 56 265 58 HOH HOH . D 4 HOH A 57 266 59 HOH HOH . D 4 HOH A 58 267 60 HOH HOH . D 4 HOH A 59 268 61 HOH HOH . D 4 HOH A 60 269 62 HOH HOH . D 4 HOH A 61 270 63 HOH HOH . D 4 HOH A 62 271 64 HOH HOH . D 4 HOH A 63 272 65 HOH HOH . D 4 HOH A 64 273 66 HOH HOH . D 4 HOH A 65 274 67 HOH HOH . D 4 HOH A 66 275 68 HOH HOH . D 4 HOH A 67 276 69 HOH HOH . D 4 HOH A 68 277 70 HOH HOH . D 4 HOH A 69 278 71 HOH HOH . D 4 HOH A 70 279 72 HOH HOH . D 4 HOH A 71 280 73 HOH HOH . D 4 HOH A 72 281 74 HOH HOH . D 4 HOH A 73 282 75 HOH HOH . D 4 HOH A 74 283 76 HOH HOH . D 4 HOH A 75 284 77 HOH HOH . D 4 HOH A 76 285 78 HOH HOH . D 4 HOH A 77 286 79 HOH HOH . D 4 HOH A 78 287 80 HOH HOH . D 4 HOH A 79 288 81 HOH HOH . D 4 HOH A 80 289 82 HOH HOH . D 4 HOH A 81 290 83 HOH HOH . D 4 HOH A 82 291 84 HOH HOH . D 4 HOH A 83 292 85 HOH HOH . D 4 HOH A 84 293 86 HOH HOH . D 4 HOH A 85 294 87 HOH HOH . D 4 HOH A 86 295 88 HOH HOH . D 4 HOH A 87 296 89 HOH HOH . D 4 HOH A 88 297 90 HOH HOH . D 4 HOH A 89 298 91 HOH HOH . D 4 HOH A 90 299 92 HOH HOH . D 4 HOH A 91 300 93 HOH HOH . D 4 HOH A 92 301 94 HOH HOH . D 4 HOH A 93 302 95 HOH HOH . D 4 HOH A 94 303 96 HOH HOH . D 4 HOH A 95 304 97 HOH HOH . D 4 HOH A 96 305 98 HOH HOH . D 4 HOH A 97 306 99 HOH HOH . D 4 HOH A 98 307 100 HOH HOH . D 4 HOH A 99 308 101 HOH HOH . D 4 HOH A 100 309 102 HOH HOH . D 4 HOH A 101 310 103 HOH HOH . D 4 HOH A 102 311 104 HOH HOH . D 4 HOH A 103 312 105 HOH HOH . D 4 HOH A 104 313 106 HOH HOH . D 4 HOH A 105 314 107 HOH HOH . D 4 HOH A 106 315 108 HOH HOH . D 4 HOH A 107 316 109 HOH HOH . D 4 HOH A 108 317 110 HOH HOH . D 4 HOH A 109 318 111 HOH HOH . D 4 HOH A 110 319 112 HOH HOH . D 4 HOH A 111 320 113 HOH HOH . D 4 HOH A 112 321 114 HOH HOH . D 4 HOH A 113 322 115 HOH HOH . D 4 HOH A 114 323 116 HOH HOH . D 4 HOH A 115 324 117 HOH HOH . D 4 HOH A 116 325 118 HOH HOH . D 4 HOH A 117 326 119 HOH HOH . D 4 HOH A 118 327 120 HOH HOH . D 4 HOH A 119 328 121 HOH HOH . D 4 HOH A 120 329 122 HOH HOH . D 4 HOH A 121 330 123 HOH HOH . D 4 HOH A 122 331 124 HOH HOH . D 4 HOH A 123 332 125 HOH HOH . D 4 HOH A 124 333 126 HOH HOH . D 4 HOH A 125 334 127 HOH HOH . D 4 HOH A 126 335 128 HOH HOH . D 4 HOH A 127 336 129 HOH HOH . D 4 HOH A 128 337 130 HOH HOH . D 4 HOH A 129 338 131 HOH HOH . D 4 HOH A 130 339 132 HOH HOH . D 4 HOH A 131 340 133 HOH HOH . D 4 HOH A 132 341 134 HOH HOH . D 4 HOH A 133 342 135 HOH HOH . D 4 HOH A 134 343 136 HOH HOH . D 4 HOH A 135 344 137 HOH HOH . D 4 HOH A 136 345 138 HOH HOH . D 4 HOH A 137 346 139 HOH HOH . D 4 HOH A 138 347 140 HOH HOH . D 4 HOH A 139 348 141 HOH HOH . D 4 HOH A 140 349 142 HOH HOH . D 4 HOH A 141 350 143 HOH HOH . D 4 HOH A 142 351 144 HOH HOH . D 4 HOH A 143 352 145 HOH HOH . D 4 HOH A 144 353 146 HOH HOH . D 4 HOH A 145 354 147 HOH HOH . D 4 HOH A 146 355 148 HOH HOH . D 4 HOH A 147 356 149 HOH HOH . D 4 HOH A 148 357 150 HOH HOH . D 4 HOH A 149 358 151 HOH HOH . D 4 HOH A 150 359 152 HOH HOH . D 4 HOH A 151 360 153 HOH HOH . D 4 HOH A 152 361 154 HOH HOH . D 4 HOH A 153 362 155 HOH HOH . D 4 HOH A 154 363 156 HOH HOH . D 4 HOH A 155 364 157 HOH HOH . D 4 HOH A 156 365 158 HOH HOH . D 4 HOH A 157 366 159 HOH HOH . D 4 HOH A 158 367 160 HOH HOH . D 4 HOH A 159 368 161 HOH HOH . D 4 HOH A 160 369 162 HOH HOH . D 4 HOH A 161 370 163 HOH HOH . D 4 HOH A 162 371 164 HOH HOH . D 4 HOH A 163 372 165 HOH HOH . D 4 HOH A 164 373 166 HOH HOH . D 4 HOH A 165 374 167 HOH HOH . D 4 HOH A 166 375 168 HOH HOH . D 4 HOH A 167 376 169 HOH HOH . D 4 HOH A 168 377 170 HOH HOH . D 4 HOH A 169 378 171 HOH HOH . D 4 HOH A 170 379 172 HOH HOH . D 4 HOH A 171 380 173 HOH HOH . D 4 HOH A 172 381 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 Y3 . . . C 3 37.255 26.602 58.565 1 28.5 ? C1 Y3 1 A 1 HETATM 2 C C2 Y3 . . . C 3 36.765 25.398 58.114 1 31.6 ? C2 Y3 1 A 1 HETATM 3 C C3 Y3 . . . C 3 37.634 24.372 57.815 1 37.5 ? C3 Y3 1 A 1 HETATM 4 C C4 Y3 . . . C 3 38.999 24.556 57.928 1 32.6 ? C4 Y3 1 A 1 HETATM 5 C C5 Y3 . . . C 3 39.493 25.768 58.365 1 30.9 ? C5 Y3 1 A 1 HETATM 6 C C6 Y3 . . . C 3 38.625 26.8 58.682 1 28.6 ? C6 Y3 1 A 1 HETATM 7 C C7 Y3 . . . C 3 39.129 28.021 59.111 1 28.7 ? C7 Y3 1 A 1 HETATM 8 C C8 Y3 . . . C 3 40.505 28.192 59.222 1 26.8 ? C8 Y3 1 A 1 HETATM 9 C C9 Y3 . . . C 3 41.366 27.15 58.909 1 28.5 ? C9 Y3 1 A 1 HETATM 10 C C10 Y3 . . . C 3 40.858 25.942 58.482 1 29.9 ? C10 Y3 1 A 1 HETATM 11 S S11 Y3 . . . C 3 36.984 22.788 57.287 1 41.8 ? S11 Y3 1 A 1 HETATM 12 O O12 Y3 . . . C 3 36.27 22.207 58.379 1 40.9 ? O12 Y3 1 A 1 HETATM 13 O O13 Y3 . . . C 3 38.065 21.929 56.913 1 42.8 ? O13 Y3 1 A 1 HETATM 14 O O14 Y3 . . . C 3 36.106 22.984 56.174 1 41.5 ? O14 Y3 1 A 1 HETATM 15 N N15 Y3 . . . C 3 38.281 29.012 59.414 1 28.3 ? N15 Y3 1 A 1 HETATM 16 C C16 Y3 . . . C 3 38.606 30.304 59.444 1 28.4 ? C16 Y3 1 A 1 HETATM 17 O O17 Y3 . . . C 3 39.733 30.73 59.198 1 28.4 ? O17 Y3 1 A 1 HETATM 18 C C18 Y3 . . . C 3 37.479 31.265 59.813 1 28.9 ? C18 Y3 1 A 1 HETATM 19 S S19 Y3 . . . C 3 43.154 27.344 59.048 1 29 ? S19 Y3 1 A 1 HETATM 20 O O20 Y3 . . . C 3 43.781 26.268 58.356 1 28.2 ? O20 Y3 1 A 1 HETATM 21 O O21 Y3 . . . C 3 43.528 27.31 60.418 1 29.5 ? O21 Y3 1 A 1 HETATM 22 O O22 Y3 . . . C 3 43.562 28.597 58.491 1 28.1 ? O22 Y3 1 A 1 HETATM 23 O O23 Y3 . . . C 3 36.378 27.6 58.885 1 26.1 ? O23 Y3 1 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #