data_1A61 # _model_server_result.job_id u0KhYXxOSMxmGEoxWOs_CQ _model_server_result.datetime_utc '2024-10-19 15:53:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a61 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":651}' # _entry.id 1A61 # _exptl.entry_id 1A61 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101 _cell.angle_gamma 90 _cell.entry_id 1A61 _cell.length_a 70.85 _cell.length_b 72.41 _cell.length_c 72.97 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A61 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? covale ? covale1 B OG SER 205 H SER 195 1_555 F C 00N . H 00N 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? covale ? covale2 C C GLU 10 I GLU 362 1_555 C N TYS 11 I TYS 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale3 C C TYS 11 I TYS 363 1_555 C N LEU 12 I LEU 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 B O LYS 174 H LYS 169 1_555 E NA NA . H NA 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc2 B O THR 177 H THR 172 1_555 E NA NA . H NA 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc3 B O PHE 215 H PHE 204 4_546 E NA NA . H NA 651 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc4 B O ARG 233 H ARG 221 1_555 D NA NA . H NA 650 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc5 B O LYS 236 H LYS 224 1_555 D NA NA . H NA 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc6 H O HOH . H HOH 429 1_555 D NA NA . H NA 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc7 H O HOH . H HOH 476 1_555 D NA NA . H NA 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc8 H O HOH . H HOH 496 1_555 D NA NA . H NA 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.138 ? metalc ? metalc9 H O HOH . H HOH 558 1_555 E NA NA . H NA 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc10 H O HOH . H HOH 559 1_555 E NA NA . H NA 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc11 H O HOH . H HOH 560 1_555 E NA NA . H NA 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc12 H O HOH . H HOH 561 1_555 D NA NA . H NA 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1A61 _atom_sites.fract_transf_matrix[1][1] 0.014114 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002744 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01381 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013961 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA H 1 650 650 NA NA . E 4 NA H 1 651 651 NA NA . F 5 00N H 1 372 372 00N 00N . G 6 HOH L 1 423 423 HOH HOH . G 6 HOH L 2 424 424 HOH HOH . G 6 HOH L 3 430 430 HOH HOH . G 6 HOH L 4 447 447 HOH HOH . G 6 HOH L 5 478 478 HOH HOH . G 6 HOH L 6 484 484 HOH HOH . G 6 HOH L 7 493 493 HOH HOH . G 6 HOH L 8 501 501 HOH HOH . G 6 HOH L 9 514 514 HOH HOH . H 6 HOH H 1 401 401 HOH HOH . H 6 HOH H 2 402 402 HOH HOH . H 6 HOH H 3 403 403 HOH HOH . H 6 HOH H 4 404 404 HOH HOH . H 6 HOH H 5 405 405 HOH HOH . H 6 HOH H 6 406 406 HOH HOH . H 6 HOH H 7 407 407 HOH HOH . H 6 HOH H 8 408 408 HOH HOH . H 6 HOH H 9 409 409 HOH HOH . H 6 HOH H 10 411 411 HOH HOH . H 6 HOH H 11 412 412 HOH HOH . H 6 HOH H 12 413 413 HOH HOH . H 6 HOH H 13 414 414 HOH HOH . H 6 HOH H 14 415 415 HOH HOH . H 6 HOH H 15 416 416 HOH HOH . H 6 HOH H 16 417 417 HOH HOH . H 6 HOH H 17 418 418 HOH HOH . H 6 HOH H 18 419 419 HOH HOH . H 6 HOH H 19 420 420 HOH HOH . H 6 HOH H 20 421 421 HOH HOH . H 6 HOH H 21 422 422 HOH HOH . H 6 HOH H 22 425 425 HOH HOH . H 6 HOH H 23 426 426 HOH HOH . H 6 HOH H 24 427 427 HOH HOH . H 6 HOH H 25 428 428 HOH HOH . H 6 HOH H 26 429 429 HOH HOH . H 6 HOH H 27 431 431 HOH HOH . H 6 HOH H 28 432 432 HOH HOH . H 6 HOH H 29 433 433 HOH HOH . H 6 HOH H 30 434 434 HOH HOH . H 6 HOH H 31 435 435 HOH HOH . H 6 HOH H 32 436 436 HOH HOH . H 6 HOH H 33 437 437 HOH HOH . H 6 HOH H 34 438 438 HOH HOH . H 6 HOH H 35 439 439 HOH HOH . H 6 HOH H 36 440 440 HOH HOH . H 6 HOH H 37 441 441 HOH HOH . H 6 HOH H 38 442 442 HOH HOH . H 6 HOH H 39 443 443 HOH HOH . H 6 HOH H 40 444 444 HOH HOH . H 6 HOH H 41 445 445 HOH HOH . H 6 HOH H 42 446 446 HOH HOH . H 6 HOH H 43 448 448 HOH HOH . H 6 HOH H 44 449 449 HOH HOH . H 6 HOH H 45 450 450 HOH HOH . H 6 HOH H 46 451 451 HOH HOH . H 6 HOH H 47 452 452 HOH HOH . H 6 HOH H 48 453 453 HOH HOH . H 6 HOH H 49 455 455 HOH HOH . H 6 HOH H 50 456 456 HOH HOH . H 6 HOH H 51 457 457 HOH HOH . H 6 HOH H 52 458 458 HOH HOH . H 6 HOH H 53 459 459 HOH HOH . H 6 HOH H 54 460 460 HOH HOH . H 6 HOH H 55 461 461 HOH HOH . H 6 HOH H 56 463 463 HOH HOH . H 6 HOH H 57 464 464 HOH HOH . H 6 HOH H 58 465 465 HOH HOH . H 6 HOH H 59 466 466 HOH HOH . H 6 HOH H 60 467 467 HOH HOH . H 6 HOH H 61 469 469 HOH HOH . H 6 HOH H 62 470 470 HOH HOH . H 6 HOH H 63 471 471 HOH HOH . H 6 HOH H 64 473 473 HOH HOH . H 6 HOH H 65 475 475 HOH HOH . H 6 HOH H 66 476 476 HOH HOH . H 6 HOH H 67 477 477 HOH HOH . H 6 HOH H 68 480 480 HOH HOH . H 6 HOH H 69 481 481 HOH HOH . H 6 HOH H 70 482 482 HOH HOH . H 6 HOH H 71 483 483 HOH HOH . H 6 HOH H 72 485 485 HOH HOH . H 6 HOH H 73 486 486 HOH HOH . H 6 HOH H 74 487 487 HOH HOH . H 6 HOH H 75 489 489 HOH HOH . H 6 HOH H 76 490 490 HOH HOH . H 6 HOH H 77 491 491 HOH HOH . H 6 HOH H 78 496 496 HOH HOH . H 6 HOH H 79 497 497 HOH HOH . H 6 HOH H 80 498 498 HOH HOH . H 6 HOH H 81 499 499 HOH HOH . H 6 HOH H 82 500 500 HOH HOH . H 6 HOH H 83 503 503 HOH HOH . H 6 HOH H 84 506 506 HOH HOH . H 6 HOH H 85 510 510 HOH HOH . H 6 HOH H 86 512 512 HOH HOH . H 6 HOH H 87 513 513 HOH HOH . H 6 HOH H 88 516 516 HOH HOH . H 6 HOH H 89 518 518 HOH HOH . H 6 HOH H 90 519 519 HOH HOH . H 6 HOH H 91 520 520 HOH HOH . H 6 HOH H 92 522 522 HOH HOH . H 6 HOH H 93 524 524 HOH HOH . H 6 HOH H 94 525 525 HOH HOH . H 6 HOH H 95 526 526 HOH HOH . H 6 HOH H 96 527 527 HOH HOH . H 6 HOH H 97 528 528 HOH HOH . H 6 HOH H 98 529 529 HOH HOH . H 6 HOH H 99 530 530 HOH HOH . H 6 HOH H 100 532 532 HOH HOH . H 6 HOH H 101 533 533 HOH HOH . H 6 HOH H 102 534 534 HOH HOH . H 6 HOH H 103 536 536 HOH HOH . H 6 HOH H 104 537 537 HOH HOH . H 6 HOH H 105 539 539 HOH HOH . H 6 HOH H 106 540 540 HOH HOH . H 6 HOH H 107 541 541 HOH HOH . H 6 HOH H 108 542 542 HOH HOH . H 6 HOH H 109 543 543 HOH HOH . H 6 HOH H 110 544 544 HOH HOH . H 6 HOH H 111 546 546 HOH HOH . H 6 HOH H 112 548 548 HOH HOH . H 6 HOH H 113 549 549 HOH HOH . H 6 HOH H 114 550 550 HOH HOH . H 6 HOH H 115 551 551 HOH HOH . H 6 HOH H 116 552 552 HOH HOH . H 6 HOH H 117 553 553 HOH HOH . H 6 HOH H 118 554 554 HOH HOH . H 6 HOH H 119 556 556 HOH HOH . H 6 HOH H 120 557 557 HOH HOH . H 6 HOH H 121 558 558 HOH HOH . H 6 HOH H 122 559 559 HOH HOH . H 6 HOH H 123 560 560 HOH HOH . H 6 HOH H 124 561 561 HOH HOH . I 6 HOH I 1 454 454 HOH HOH . I 6 HOH I 2 474 474 HOH HOH . I 6 HOH I 3 479 479 HOH HOH . I 6 HOH I 4 488 488 HOH HOH . I 6 HOH I 5 492 492 HOH HOH . I 6 HOH I 6 517 517 HOH HOH . I 6 HOH I 7 523 523 HOH HOH . I 6 HOH I 8 538 538 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 18.126 _atom_site.Cartn_y -16.685 _atom_site.Cartn_z 38.292 _atom_site.occupancy 0.95 _atom_site.B_iso_or_equiv 26.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 651 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #