data_1A72 # _model_server_result.job_id xXiLYkQ8LAgASpKVr1Ml7g _model_server_result.datetime_utc '2025-02-27 07:18:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a72 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":378}' # _entry.id 1A72 # _exptl.entry_id 1A72 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-BETA-D-RIBOFURANOSYLPICOLINAMIDE ADENINE-DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1A72 _cell.length_a 55.5 _cell.length_b 74.2 _cell.length_c 179.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A72 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 89.6 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 46 A CYS 46 1_555 B ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc2 A NE2 HIS 67 A HIS 67 1_555 B ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc3 A SG CYS 97 A CYS 97 1_555 C ZN ZN . A ZN 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc4 A SG CYS 100 A CYS 100 1_555 C ZN ZN . A ZN 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc5 A SG CYS 103 A CYS 103 1_555 C ZN ZN . A ZN 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc6 A SG CYS 111 A CYS 111 1_555 C ZN ZN . A ZN 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc7 A SG CYS 174 A CYS 174 1_555 B ZN ZN . A ZN 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc8 B ZN ZN . A ZN 376 1_555 E O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.734 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id PAD _chem_comp.mon_nstd_flag . _chem_comp.name '5-BETA-D-RIBOFURANOSYLPICOLINAMIDE ADENINE-DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CPAD # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A PAD doub 237 n n PA O2A PAD sing 238 n n PA O5B PAD sing 239 n n PA O3 PAD sing 240 n n O2A HOA2 PAD sing 241 n n O5B C5B PAD sing 242 n n C5B C4B PAD sing 243 n n C5B H51A PAD sing 244 n n C5B H52A PAD sing 245 n n C4B O4B PAD sing 246 n n C4B C3B PAD sing 247 n n C4B H4B PAD sing 248 n n O4B C1B PAD sing 249 n n C3B O3B PAD sing 250 n n C3B C2B PAD sing 251 n n C3B H3B PAD sing 252 n n O3B HO3A PAD sing 253 n n C2B O2B PAD sing 254 n n C2B C1B PAD sing 255 n n C2B H2B PAD sing 256 n n O2B HO2A PAD sing 257 n n C1B N9A PAD sing 258 n n C1B H1B PAD sing 259 n n N9A C8A PAD sing 260 n y N9A C4A PAD sing 261 n y C8A N7A PAD doub 262 n y C8A H8A PAD sing 263 n n N7A C5A PAD sing 264 n y C5A C6A PAD sing 265 n y C5A C4A PAD doub 266 n y C6A N6A PAD sing 267 n n C6A N1A PAD doub 268 n y N6A H61A PAD sing 269 n n N6A H62A PAD sing 270 n n N1A C2A PAD sing 271 n y C2A N3A PAD doub 272 n y C2A H2A PAD sing 273 n n N3A C4A PAD sing 274 n y O3 PN PAD sing 275 n n PN O1N PAD doub 276 n n PN O2N PAD sing 277 n n PN O5D PAD sing 278 n n O5D C5D PAD sing 279 n n C5D C4D PAD sing 280 n n C5D H51N PAD sing 281 n n C5D H52N PAD sing 282 n n C4D O4D PAD sing 283 n n C4D C3D PAD sing 284 n n C4D H4D PAD sing 285 n n O4D C1D PAD sing 286 n n C3D O3D PAD sing 287 n n C3D C2D PAD sing 288 n n C3D H3D PAD sing 289 n n O3D HO3N PAD sing 290 n n C2D O2D PAD sing 291 n n C2D C1D PAD sing 292 n n C2D H2D PAD sing 293 n n O2D HO2N PAD sing 294 n n C1D C1N PAD sing 295 n n C1D H1D PAD sing 296 n n C1N N2N PAD doub 297 n y C1N C6N PAD sing 298 n y N2N C3N PAD sing 299 n y N2N H2N PAD sing 300 n n C3N C7N PAD sing 301 n n C3N C4N PAD doub 302 n y C7N O7N PAD doub 303 n n C7N N7N PAD sing 304 n n N7N H71N PAD sing 305 n n N7N H72N PAD sing 306 n n C4N C5N PAD sing 307 n y C4N H4N PAD sing 308 n n C5N C6N PAD doub 309 n y C5N H5N PAD sing 310 n n C6N H6N PAD sing 311 n n # _atom_sites.entry_id 1A72 _atom_sites.fract_transf_matrix[1][1] 0.018018 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013477 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00558 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 376 376 ZN ZN . C 2 ZN A 1 377 377 ZN ZN . D 3 PAD A 1 378 3 PAD PAD . E 4 HOH A 1 379 79 HOH HOH . E 4 HOH A 2 380 80 HOH HOH . E 4 HOH A 3 381 81 HOH HOH . E 4 HOH A 4 382 82 HOH HOH . E 4 HOH A 5 383 84 HOH HOH . E 4 HOH A 6 384 85 HOH HOH . E 4 HOH A 7 385 87 HOH HOH . E 4 HOH A 8 386 89 HOH HOH . E 4 HOH A 9 387 90 HOH HOH . E 4 HOH A 10 388 91 HOH HOH . E 4 HOH A 11 389 93 HOH HOH . E 4 HOH A 12 390 94 HOH HOH . E 4 HOH A 13 391 95 HOH HOH . E 4 HOH A 14 392 96 HOH HOH . E 4 HOH A 15 393 97 HOH HOH . E 4 HOH A 16 394 98 HOH HOH . E 4 HOH A 17 395 100 HOH HOH . E 4 HOH A 18 396 101 HOH HOH . E 4 HOH A 19 397 102 HOH HOH . E 4 HOH A 20 398 103 HOH HOH . E 4 HOH A 21 399 104 HOH HOH . E 4 HOH A 22 400 105 HOH HOH . E 4 HOH A 23 401 106 HOH HOH . E 4 HOH A 24 402 1 HOH HOH . E 4 HOH A 25 403 4 HOH HOH . E 4 HOH A 26 404 5 HOH HOH . E 4 HOH A 27 405 6 HOH HOH . E 4 HOH A 28 406 7 HOH HOH . E 4 HOH A 29 407 8 HOH HOH . E 4 HOH A 30 408 9 HOH HOH . E 4 HOH A 31 409 10 HOH HOH . E 4 HOH A 32 410 11 HOH HOH . E 4 HOH A 33 411 12 HOH HOH . E 4 HOH A 34 412 14 HOH HOH . E 4 HOH A 35 413 15 HOH HOH . E 4 HOH A 36 414 16 HOH HOH . E 4 HOH A 37 415 17 HOH HOH . E 4 HOH A 38 416 18 HOH HOH . E 4 HOH A 39 417 19 HOH HOH . E 4 HOH A 40 418 21 HOH HOH . E 4 HOH A 41 419 22 HOH HOH . E 4 HOH A 42 420 25 HOH HOH . E 4 HOH A 43 421 28 HOH HOH . E 4 HOH A 44 422 29 HOH HOH . E 4 HOH A 45 423 30 HOH HOH . E 4 HOH A 46 424 31 HOH HOH . E 4 HOH A 47 425 32 HOH HOH . E 4 HOH A 48 426 33 HOH HOH . E 4 HOH A 49 427 34 HOH HOH . E 4 HOH A 50 428 35 HOH HOH . E 4 HOH A 51 429 36 HOH HOH . E 4 HOH A 52 430 38 HOH HOH . E 4 HOH A 53 431 39 HOH HOH . E 4 HOH A 54 432 40 HOH HOH . E 4 HOH A 55 433 41 HOH HOH . E 4 HOH A 56 434 42 HOH HOH . E 4 HOH A 57 435 43 HOH HOH . E 4 HOH A 58 436 45 HOH HOH . E 4 HOH A 59 437 46 HOH HOH . E 4 HOH A 60 438 47 HOH HOH . E 4 HOH A 61 439 50 HOH HOH . E 4 HOH A 62 440 51 HOH HOH . E 4 HOH A 63 441 53 HOH HOH . E 4 HOH A 64 442 56 HOH HOH . E 4 HOH A 65 443 58 HOH HOH . E 4 HOH A 66 444 62 HOH HOH . E 4 HOH A 67 445 65 HOH HOH . E 4 HOH A 68 446 68 HOH HOH . E 4 HOH A 69 447 69 HOH HOH . E 4 HOH A 70 448 70 HOH HOH . E 4 HOH A 71 449 72 HOH HOH . E 4 HOH A 72 450 73 HOH HOH . E 4 HOH A 73 451 74 HOH HOH . E 4 HOH A 74 452 75 HOH HOH . E 4 HOH A 75 453 76 HOH HOH . E 4 HOH A 76 454 77 HOH HOH . E 4 HOH A 77 455 78 HOH HOH . E 4 HOH A 78 456 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA PAD . . . D 3 13.285 7.278 26.71 1 30.61 ? PA PAD 378 A 1 HETATM 2 O O1A PAD . . . D 3 12.092 6.356 26.757 1 32.41 ? O1A PAD 378 A 1 HETATM 3 O O2A PAD . . . D 3 14.427 6.88 25.824 1 32.21 ? O2A PAD 378 A 1 HETATM 4 O O5B PAD . . . D 3 13.973 7.599 28.159 1 32.69 ? O5B PAD 378 A 1 HETATM 5 C C5B PAD . . . D 3 13.798 6.758 29.321 1 29.55 ? C5B PAD 378 A 1 HETATM 6 C C4B PAD . . . D 3 15.143 6.947 30.016 1 28.01 ? C4B PAD 378 A 1 HETATM 7 O O4B PAD . . . D 3 15.122 6.442 31.381 1 25.46 ? O4B PAD 378 A 1 HETATM 8 C C3B PAD . . . D 3 16.272 6.282 29.222 1 25.75 ? C3B PAD 378 A 1 HETATM 9 O O3B PAD . . . D 3 17.474 7.06 29.263 1 25.59 ? O3B PAD 378 A 1 HETATM 10 C C2B PAD . . . D 3 16.543 5.072 30.073 1 24.81 ? C2B PAD 378 A 1 HETATM 11 O O2B PAD . . . D 3 17.951 4.803 29.997 1 23.28 ? O2B PAD 378 A 1 HETATM 12 C C1B PAD . . . D 3 16.22 5.545 31.475 1 23.79 ? C1B PAD 378 A 1 HETATM 13 N N9A PAD . . . D 3 15.98 4.466 32.439 1 21.95 ? N9A PAD 378 A 1 HETATM 14 C C8A PAD . . . D 3 15.424 3.252 32.222 1 19.88 ? C8A PAD 378 A 1 HETATM 15 N N7A PAD . . . D 3 15.314 2.59 33.377 1 19.65 ? N7A PAD 378 A 1 HETATM 16 C C5A PAD . . . D 3 15.812 3.437 34.282 1 21.24 ? C5A PAD 378 A 1 HETATM 17 C C6A PAD . . . D 3 15.892 3.178 35.639 1 19.56 ? C6A PAD 378 A 1 HETATM 18 N N6A PAD . . . D 3 15.67 1.973 36.124 1 20.52 ? N6A PAD 378 A 1 HETATM 19 N N1A PAD . . . D 3 16.423 4.158 36.379 1 20.14 ? N1A PAD 378 A 1 HETATM 20 C C2A PAD . . . D 3 16.847 5.299 35.818 1 20.34 ? C2A PAD 378 A 1 HETATM 21 N N3A PAD . . . D 3 16.791 5.552 34.513 1 19.81 ? N3A PAD 378 A 1 HETATM 22 C C4A PAD . . . D 3 16.252 4.615 33.722 1 21.04 ? C4A PAD 378 A 1 HETATM 23 O O3 PAD . . . D 3 12.915 8.845 26.498 1 32.15 ? O3 PAD 378 A 1 HETATM 24 P PN PAD . . . D 3 11.655 9.733 27.031 1 32.08 ? PN PAD 378 A 1 HETATM 25 O O1N PAD . . . D 3 11.35 10.824 26.043 1 32.95 ? O1N PAD 378 A 1 HETATM 26 O O2N PAD . . . D 3 12.034 10.231 28.406 1 35.54 ? O2N PAD 378 A 1 HETATM 27 O O5D PAD . . . D 3 10.562 8.517 27.031 1 30.88 ? O5D PAD 378 A 1 HETATM 28 C C5D PAD . . . D 3 10.486 7.881 28.328 1 29.19 ? C5D PAD 378 A 1 HETATM 29 C C4D PAD . . . D 3 9.299 8.379 29.103 1 26.8 ? C4D PAD 378 A 1 HETATM 30 O O4D PAD . . . D 3 9.167 9.802 29.263 1 25.5 ? O4D PAD 378 A 1 HETATM 31 C C3D PAD . . . D 3 8.192 7.851 28.25 1 27.31 ? C3D PAD 378 A 1 HETATM 32 O O3D PAD . . . D 3 8.169 6.429 28.339 1 24.66 ? O3D PAD 378 A 1 HETATM 33 C C2D PAD . . . D 3 7.03 8.655 28.789 1 27.72 ? C2D PAD 378 A 1 HETATM 34 O O2D PAD . . . D 3 6.522 7.937 29.921 1 29.11 ? O2D PAD 378 A 1 HETATM 35 C C1D PAD . . . D 3 7.738 9.951 29.156 1 27.66 ? C1D PAD 378 A 1 HETATM 36 C C1N PAD . . . D 3 7.586 10.768 27.94 1 31.47 ? C1N PAD 378 A 1 HETATM 37 N N2N PAD . . . D 3 8.294 10.427 26.762 1 34.01 ? N2N PAD 378 A 1 HETATM 38 C C3N PAD . . . D 3 8.211 11.249 25.634 1 35.83 ? C3N PAD 378 A 1 HETATM 39 C C7N PAD . . . D 3 8.919 10.877 24.328 1 37.93 ? C7N PAD 378 A 1 HETATM 40 O O7N PAD . . . D 3 9.224 11.807 23.576 1 39.46 ? O7N PAD 378 A 1 HETATM 41 N N7N PAD . . . D 3 9.165 9.575 24.075 1 38.11 ? N7N PAD 378 A 1 HETATM 42 C C4N PAD . . . D 3 7.462 12.423 25.679 1 35.16 ? C4N PAD 378 A 1 HETATM 43 C C5N PAD . . . D 3 6.752 12.741 26.853 1 35.01 ? C5N PAD 378 A 1 HETATM 44 C C6N PAD . . . D 3 6.806 11.915 27.976 1 32.99 ? C6N PAD 378 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 44 #