data_1A78 # _model_server_result.job_id PUMyfKWW0k8zN3TUIDYtBA _model_server_result.datetime_utc '2024-11-05 00:39:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":136}' # _entry.id 1A78 # _exptl.entry_id 1A78 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.2 _cell.angle_gamma 90 _cell.entry_id 1A78 _cell.length_a 51.8 _cell.length_b 51 _cell.length_c 56.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GAL _pdbx_entity_branch_link.comp_id_2 YIO _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 S1 _pdbx_entity_branch_link.leaving_atom_id_2 HS1 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C YIO 1 E 1 YIO ? 1 TDG 2 n C GAL 2 E 2 GAL ? 1 TDG 2 n D YIO 1 F 1 YIO ? 2 TDG 2 n D GAL 2 F 2 GAL ? 2 TDG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C S1 YIO . E YIO 1 1_555 C C1 GAL . E GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 sing covale ? covale2 D S1 YIO . F YIO 1 1_555 D C1 GAL . F GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 sing # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 83 n n S1 HS1 DTT sing 84 n n C1 C2 DTT sing 85 n n C1 H11 DTT sing 86 n n C1 H12 DTT sing 87 n n C2 O2 DTT sing 88 n n C2 C3 DTT sing 89 n n C2 H2 DTT sing 90 n n O2 HO2 DTT sing 91 n n C3 O3 DTT sing 92 n n C3 C4 DTT sing 93 n n C3 H3 DTT sing 94 n n O3 HO3 DTT sing 95 n n C4 S4 DTT sing 96 n n C4 H41 DTT sing 97 n n C4 H42 DTT sing 98 n n S4 HS2 DTT sing 99 n n # _atom_sites.entry_id 1A78 _atom_sites.fract_transf_matrix[1][1] 0.019305 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002439 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017903 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 DTT A 1 136 3 DTT DTT . F 4 HOH A 1 137 1 HOH HOH . F 4 HOH A 2 138 4 HOH HOH . F 4 HOH A 3 139 5 HOH HOH . F 4 HOH A 4 140 7 HOH HOH . F 4 HOH A 5 141 8 HOH HOH . F 4 HOH A 6 142 11 HOH HOH . F 4 HOH A 7 143 14 HOH HOH . F 4 HOH A 8 144 15 HOH HOH . F 4 HOH A 9 145 16 HOH HOH . F 4 HOH A 10 146 17 HOH HOH . F 4 HOH A 11 147 21 HOH HOH . F 4 HOH A 12 148 22 HOH HOH . F 4 HOH A 13 149 23 HOH HOH . F 4 HOH A 14 150 24 HOH HOH . F 4 HOH A 15 151 25 HOH HOH . F 4 HOH A 16 152 27 HOH HOH . F 4 HOH A 17 153 28 HOH HOH . F 4 HOH A 18 154 31 HOH HOH . F 4 HOH A 19 155 35 HOH HOH . F 4 HOH A 20 156 36 HOH HOH . F 4 HOH A 21 157 37 HOH HOH . F 4 HOH A 22 158 43 HOH HOH . F 4 HOH A 23 159 44 HOH HOH . G 4 HOH B 1 136 2 HOH HOH . G 4 HOH B 2 137 3 HOH HOH . G 4 HOH B 3 138 6 HOH HOH . G 4 HOH B 4 139 9 HOH HOH . G 4 HOH B 5 140 10 HOH HOH . G 4 HOH B 6 141 12 HOH HOH . G 4 HOH B 7 142 13 HOH HOH . G 4 HOH B 8 143 18 HOH HOH . G 4 HOH B 9 144 19 HOH HOH . G 4 HOH B 10 145 20 HOH HOH . G 4 HOH B 11 146 26 HOH HOH . G 4 HOH B 12 147 29 HOH HOH . G 4 HOH B 13 148 30 HOH HOH . G 4 HOH B 14 149 32 HOH HOH . G 4 HOH B 15 150 33 HOH HOH . G 4 HOH B 16 151 34 HOH HOH . G 4 HOH B 17 152 38 HOH HOH . G 4 HOH B 18 153 39 HOH HOH . G 4 HOH B 19 154 40 HOH HOH . G 4 HOH B 20 155 41 HOH HOH . G 4 HOH B 21 156 42 HOH HOH . G 4 HOH B 22 157 45 HOH HOH . G 4 HOH B 23 158 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . E 3 23.877 -4.385 6.061 0.42 44.94 ? S1 DTT 136 A 1 HETATM 2 C C1 DTT . . . E 3 24.463 -3.022 4.983 0.42 46.67 ? C1 DTT 136 A 1 HETATM 3 C C2 DTT . . . E 3 25.51 -2.064 5.546 0.42 48.68 ? C2 DTT 136 A 1 HETATM 4 O O2 DTT . . . E 3 26.264 -1.665 4.402 0.42 48.36 ? O2 DTT 136 A 1 HETATM 5 C C3 DTT . . . E 3 26.528 -2.754 6.536 0.42 49.93 ? C3 DTT 136 A 1 HETATM 6 O O3 DTT . . . E 3 27.639 -1.856 6.625 0.42 50.3 ? O3 DTT 136 A 1 HETATM 7 C C4 DTT . . . E 3 26.01 -2.837 7.991 0.42 51.21 ? C4 DTT 136 A 1 HETATM 8 S S4 DTT . . . E 3 25.054 -4.329 8.551 0.42 52.9 ? S4 DTT 136 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #