data_1A7K # _model_server_result.job_id tHfnUg7zeK7QelMHs7QzuQ _model_server_result.datetime_utc '2025-02-05 09:48:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a7k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":363}' # _entry.id 1A7K # _exptl.entry_id 1A7K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95 _cell.angle_gamma 90 _cell.entry_id 1A7K _cell.length_a 67.9 _cell.length_b 81 _cell.length_c 131.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A7K _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 J N N ? 3 M N N ? 3 P N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 235 n n PA O2A NAD sing 236 n n PA O5B NAD sing 237 n n PA O3 NAD sing 238 n n O2A HOA2 NAD sing 239 n n O5B C5B NAD sing 240 n n C5B C4B NAD sing 241 n n C5B H51A NAD sing 242 n n C5B H52A NAD sing 243 n n C4B O4B NAD sing 244 n n C4B C3B NAD sing 245 n n C4B H4B NAD sing 246 n n O4B C1B NAD sing 247 n n C3B O3B NAD sing 248 n n C3B C2B NAD sing 249 n n C3B H3B NAD sing 250 n n O3B HO3A NAD sing 251 n n C2B O2B NAD sing 252 n n C2B C1B NAD sing 253 n n C2B H2B NAD sing 254 n n O2B HO2A NAD sing 255 n n C1B N9A NAD sing 256 n n C1B H1B NAD sing 257 n n N9A C8A NAD sing 258 n y N9A C4A NAD sing 259 n y C8A N7A NAD doub 260 n y C8A H8A NAD sing 261 n n N7A C5A NAD sing 262 n y C5A C6A NAD sing 263 n y C5A C4A NAD doub 264 n y C6A N6A NAD sing 265 n n C6A N1A NAD doub 266 n y N6A H61A NAD sing 267 n n N6A H62A NAD sing 268 n n N1A C2A NAD sing 269 n y C2A N3A NAD doub 270 n y C2A H2A NAD sing 271 n n N3A C4A NAD sing 272 n y O3 PN NAD sing 273 n n PN O1N NAD doub 274 n n PN O2N NAD sing 275 n n PN O5D NAD sing 276 n n O5D C5D NAD sing 277 n n C5D C4D NAD sing 278 n n C5D H51N NAD sing 279 n n C5D H52N NAD sing 280 n n C4D O4D NAD sing 281 n n C4D C3D NAD sing 282 n n C4D H4D NAD sing 283 n n O4D C1D NAD sing 284 n n C3D O3D NAD sing 285 n n C3D C2D NAD sing 286 n n C3D H3D NAD sing 287 n n O3D HO3N NAD sing 288 n n C2D O2D NAD sing 289 n n C2D C1D NAD sing 290 n n C2D H2D NAD sing 291 n n O2D HO2N NAD sing 292 n n C1D N1N NAD sing 293 n n C1D H1D NAD sing 294 n n N1N C2N NAD sing 295 n y N1N C6N NAD doub 296 n y C2N C3N NAD doub 297 n y C2N H2N NAD sing 298 n n C3N C7N NAD sing 299 n n C3N C4N NAD sing 300 n y C7N O7N NAD doub 301 n n C7N N7N NAD sing 302 n n N7N H71N NAD sing 303 n n N7N H72N NAD sing 304 n n C4N C5N NAD doub 305 n y C4N H4N NAD sing 306 n n C5N C6N NAD sing 307 n y C5N H5N NAD sing 308 n n C6N H6N NAD sing 309 n n # _atom_sites.entry_id 1A7K _atom_sites.fract_transf_matrix[1][1] 0.014728 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001288 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00761 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 A 1 361 359 PO4 PO4 . F 2 PO4 A 1 362 360 PO4 PO4 . G 3 NAD A 1 363 361 NAD NAD . H 2 PO4 B 1 361 359 PO4 PO4 . I 2 PO4 B 1 362 360 PO4 PO4 . J 3 NAD B 1 363 361 NAD NAD . K 2 PO4 C 1 361 359 PO4 PO4 . L 2 PO4 C 1 362 360 PO4 PO4 . M 3 NAD C 1 363 361 NAD NAD . N 2 PO4 D 1 361 359 PO4 PO4 . O 2 PO4 D 1 362 360 PO4 PO4 . P 3 NAD D 1 363 361 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . J 3 41.794 -52.416 143.728 1 34.67 ? PA NAD 363 B 1 HETATM 2 O O1A NAD . . . J 3 43.256 -52.764 143.591 1 35.82 ? O1A NAD 363 B 1 HETATM 3 O O2A NAD . . . J 3 41.006 -52.781 144.95 1 36.81 ? O2A NAD 363 B 1 HETATM 4 O O5B NAD . . . J 3 40.957 -52.78 142.397 1 35.35 ? O5B NAD 363 B 1 HETATM 5 C C5B NAD . . . J 3 41.739 -52.931 141.225 1 36.71 ? C5B NAD 363 B 1 HETATM 6 C C4B NAD . . . J 3 41.496 -54.407 140.932 1 39.26 ? C4B NAD 363 B 1 HETATM 7 O O4B NAD . . . J 3 41.936 -54.715 139.568 1 41.96 ? O4B NAD 363 B 1 HETATM 8 C C3B NAD . . . J 3 42.061 -55.476 141.894 1 37.13 ? C3B NAD 363 B 1 HETATM 9 O O3B NAD . . . J 3 41.021 -56.308 142.401 1 34.08 ? O3B NAD 363 B 1 HETATM 10 C C2B NAD . . . J 3 42.883 -56.336 140.942 1 38.13 ? C2B NAD 363 B 1 HETATM 11 O O2B NAD . . . J 3 42.878 -57.719 141.22 1 35.53 ? O2B NAD 363 B 1 HETATM 12 C C1B NAD . . . J 3 42.233 -56.127 139.593 1 42.92 ? C1B NAD 363 B 1 HETATM 13 N N9A NAD . . . J 3 43.203 -56.208 138.498 1 48.64 ? N9A NAD 363 B 1 HETATM 14 C C8A NAD . . . J 3 44.503 -55.825 138.522 1 50.77 ? C8A NAD 363 B 1 HETATM 15 N N7A NAD . . . J 3 45.093 -56.032 137.332 1 51.75 ? N7A NAD 363 B 1 HETATM 16 C C5A NAD . . . J 3 44.113 -56.55 136.6 1 52.67 ? C5A NAD 363 B 1 HETATM 17 C C6A NAD . . . J 3 44.266 -56.933 135.275 1 53.06 ? C6A NAD 363 B 1 HETATM 18 N N6A NAD . . . J 3 45.429 -56.832 134.601 1 52.37 ? N6A NAD 363 B 1 HETATM 19 N N1A NAD . . . J 3 43.13 -57.421 134.731 1 53.44 ? N1A NAD 363 B 1 HETATM 20 C C2A NAD . . . J 3 41.967 -57.532 135.404 1 54.37 ? C2A NAD 363 B 1 HETATM 21 N N3A NAD . . . J 3 41.834 -57.173 136.682 1 53.13 ? N3A NAD 363 B 1 HETATM 22 C C4A NAD . . . J 3 42.921 -56.673 137.294 1 51.78 ? C4A NAD 363 B 1 HETATM 23 O O3 NAD . . . J 3 41.886 -50.828 143.694 1 36.86 ? O3 NAD 363 B 1 HETATM 24 P PN NAD . . . J 3 40.765 -49.709 143.471 1 38.41 ? PN NAD 363 B 1 HETATM 25 O O1N NAD . . . J 3 40.751 -48.727 144.658 1 38.74 ? O1N NAD 363 B 1 HETATM 26 O O2N NAD . . . J 3 39.571 -50.472 142.893 1 38.59 ? O2N NAD 363 B 1 HETATM 27 O O5D NAD . . . J 3 41.567 -48.895 142.291 1 40.39 ? O5D NAD 363 B 1 HETATM 28 C C5D NAD . . . J 3 41.364 -49.061 140.874 1 38.66 ? C5D NAD 363 B 1 HETATM 29 C C4D NAD . . . J 3 41.237 -47.648 140.284 1 36.25 ? C4D NAD 363 B 1 HETATM 30 O O4D NAD . . . J 3 40.029 -47.092 140.869 1 36.78 ? O4D NAD 363 B 1 HETATM 31 C C3D NAD . . . J 3 42.45 -46.771 140.668 1 33.93 ? C3D NAD 363 B 1 HETATM 32 O O3D NAD . . . J 3 43.017 -46.076 139.56 1 34.98 ? O3D NAD 363 B 1 HETATM 33 C C2D NAD . . . J 3 41.848 -45.685 141.519 1 34.66 ? C2D NAD 363 B 1 HETATM 34 O O2D NAD . . . J 3 42.438 -44.364 141.387 1 37.16 ? O2D NAD 363 B 1 HETATM 35 C C1D NAD . . . J 3 40.473 -45.732 140.911 1 36.02 ? C1D NAD 363 B 1 HETATM 36 N N1N NAD . . . J 3 39.654 -45.001 141.841 1 36.15 ? N1N NAD 363 B 1 HETATM 37 C C2N NAD . . . J 3 39.711 -45.423 143.17 1 37.19 ? C2N NAD 363 B 1 HETATM 38 C C3N NAD . . . J 3 39.422 -44.533 144.204 1 38.74 ? C3N NAD 363 B 1 HETATM 39 C C7N NAD . . . J 3 39.682 -44.958 145.634 1 36.3 ? C7N NAD 363 B 1 HETATM 40 O O7N NAD . . . J 3 39.629 -44.067 146.48 1 36.76 ? O7N NAD 363 B 1 HETATM 41 N N7N NAD . . . J 3 39.953 -46.26 145.831 1 34.4 ? N7N NAD 363 B 1 HETATM 42 C C4N NAD . . . J 3 38.936 -43.244 143.928 1 40.06 ? C4N NAD 363 B 1 HETATM 43 C C5N NAD . . . J 3 38.93 -42.833 142.571 1 41.11 ? C5N NAD 363 B 1 HETATM 44 C C6N NAD . . . J 3 39.302 -43.691 141.518 1 37.78 ? C6N NAD 363 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #