data_1A7V # _model_server_result.job_id 0MHsz1CKw0mi1AHC7CV1ng _model_server_result.datetime_utc '2024-10-18 16:26:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a7v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":150}' # _entry.id 1A7V # _exptl.entry_id 1A7V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1A7V _cell.length_a 63 _cell.length_b 113.5 _cell.length_c 34.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A7V _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 113 A CYS 113 1_555 C CAB HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? covale ? covale2 A SG CYS 116 A CYS 116 1_555 C CAC HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? covale ? covale3 B SG CYS 113 B CYS 113 1_555 D CAB HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? covale ? covale4 B SG CYS 116 B CYS 116 1_555 D CAC HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? metalc ? metalc1 A NE2 HIS 117 A HIS 117 1_555 C FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc2 B NE2 HIS 117 B HIS 117 1_555 D FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 1A7V _atom_sites.fract_transf_matrix[1][1] 0.015873 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008811 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028986 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 150 150 HEM HEM . D 2 HEM B 1 150 150 HEM HEM . E 3 HOH A 1 151 1 HOH HOH . E 3 HOH A 2 152 4 HOH HOH . E 3 HOH A 3 153 6 HOH HOH . E 3 HOH A 4 154 7 HOH HOH . E 3 HOH A 5 155 8 HOH HOH . E 3 HOH A 6 156 9 HOH HOH . E 3 HOH A 7 157 10 HOH HOH . E 3 HOH A 8 158 11 HOH HOH . E 3 HOH A 9 159 12 HOH HOH . E 3 HOH A 10 160 13 HOH HOH . E 3 HOH A 11 161 14 HOH HOH . E 3 HOH A 12 162 16 HOH HOH . E 3 HOH A 13 163 17 HOH HOH . E 3 HOH A 14 164 19 HOH HOH . E 3 HOH A 15 165 20 HOH HOH . E 3 HOH A 16 166 21 HOH HOH . E 3 HOH A 17 167 26 HOH HOH . E 3 HOH A 18 168 28 HOH HOH . E 3 HOH A 19 169 29 HOH HOH . E 3 HOH A 20 170 30 HOH HOH . E 3 HOH A 21 171 31 HOH HOH . E 3 HOH A 22 172 32 HOH HOH . E 3 HOH A 23 173 33 HOH HOH . E 3 HOH A 24 174 34 HOH HOH . E 3 HOH A 25 175 35 HOH HOH . E 3 HOH A 26 176 36 HOH HOH . E 3 HOH A 27 177 37 HOH HOH . E 3 HOH A 28 178 38 HOH HOH . E 3 HOH A 29 179 40 HOH HOH . E 3 HOH A 30 180 41 HOH HOH . E 3 HOH A 31 181 44 HOH HOH . E 3 HOH A 32 182 45 HOH HOH . E 3 HOH A 33 183 46 HOH HOH . E 3 HOH A 34 184 47 HOH HOH . E 3 HOH A 35 185 49 HOH HOH . E 3 HOH A 36 186 50 HOH HOH . E 3 HOH A 37 187 51 HOH HOH . E 3 HOH A 38 188 52 HOH HOH . E 3 HOH A 39 189 53 HOH HOH . E 3 HOH A 40 190 62 HOH HOH . E 3 HOH A 41 191 63 HOH HOH . E 3 HOH A 42 192 64 HOH HOH . E 3 HOH A 43 193 65 HOH HOH . E 3 HOH A 44 194 66 HOH HOH . E 3 HOH A 45 195 67 HOH HOH . E 3 HOH A 46 196 68 HOH HOH . E 3 HOH A 47 197 71 HOH HOH . E 3 HOH A 48 198 73 HOH HOH . E 3 HOH A 49 199 74 HOH HOH . E 3 HOH A 50 200 75 HOH HOH . E 3 HOH A 51 201 80 HOH HOH . E 3 HOH A 52 202 81 HOH HOH . E 3 HOH A 53 203 82 HOH HOH . E 3 HOH A 54 204 83 HOH HOH . E 3 HOH A 55 205 84 HOH HOH . E 3 HOH A 56 206 85 HOH HOH . E 3 HOH A 57 207 87 HOH HOH . E 3 HOH A 58 208 88 HOH HOH . E 3 HOH A 59 209 92 HOH HOH . E 3 HOH A 60 210 93 HOH HOH . E 3 HOH A 61 211 95 HOH HOH . E 3 HOH A 62 212 96 HOH HOH . E 3 HOH A 63 213 97 HOH HOH . E 3 HOH A 64 214 98 HOH HOH . E 3 HOH A 65 215 100 HOH HOH . E 3 HOH A 66 216 107 HOH HOH . E 3 HOH A 67 217 109 HOH HOH . E 3 HOH A 68 218 111 HOH HOH . E 3 HOH A 69 219 112 HOH HOH . E 3 HOH A 70 220 113 HOH HOH . E 3 HOH A 71 221 114 HOH HOH . E 3 HOH A 72 222 116 HOH HOH . E 3 HOH A 73 223 117 HOH HOH . E 3 HOH A 74 224 123 HOH HOH . E 3 HOH A 75 225 124 HOH HOH . E 3 HOH A 76 226 126 HOH HOH . E 3 HOH A 77 227 129 HOH HOH . E 3 HOH A 78 228 130 HOH HOH . E 3 HOH A 79 229 132 HOH HOH . E 3 HOH A 80 230 133 HOH HOH . E 3 HOH A 81 231 134 HOH HOH . E 3 HOH A 82 232 136 HOH HOH . E 3 HOH A 83 233 137 HOH HOH . E 3 HOH A 84 234 138 HOH HOH . E 3 HOH A 85 235 139 HOH HOH . E 3 HOH A 86 236 140 HOH HOH . E 3 HOH A 87 237 141 HOH HOH . E 3 HOH A 88 238 142 HOH HOH . E 3 HOH A 89 239 145 HOH HOH . E 3 HOH A 90 240 146 HOH HOH . E 3 HOH A 91 241 147 HOH HOH . E 3 HOH A 92 242 148 HOH HOH . E 3 HOH A 93 243 149 HOH HOH . E 3 HOH A 94 244 150 HOH HOH . E 3 HOH A 95 245 151 HOH HOH . E 3 HOH A 96 246 152 HOH HOH . E 3 HOH A 97 247 168 HOH HOH . E 3 HOH A 98 248 169 HOH HOH . E 3 HOH A 99 249 170 HOH HOH . E 3 HOH A 100 250 172 HOH HOH . E 3 HOH A 101 251 173 HOH HOH . E 3 HOH A 102 252 176 HOH HOH . E 3 HOH A 103 253 177 HOH HOH . E 3 HOH A 104 254 178 HOH HOH . E 3 HOH A 105 255 179 HOH HOH . E 3 HOH A 106 256 180 HOH HOH . E 3 HOH A 107 257 182 HOH HOH . E 3 HOH A 108 258 183 HOH HOH . E 3 HOH A 109 259 184 HOH HOH . E 3 HOH A 110 260 185 HOH HOH . E 3 HOH A 111 261 189 HOH HOH . E 3 HOH A 112 262 190 HOH HOH . E 3 HOH A 113 263 191 HOH HOH . E 3 HOH A 114 264 192 HOH HOH . E 3 HOH A 115 265 193 HOH HOH . F 3 HOH B 1 151 2 HOH HOH . F 3 HOH B 2 152 3 HOH HOH . F 3 HOH B 3 153 5 HOH HOH . F 3 HOH B 4 154 15 HOH HOH . F 3 HOH B 5 155 18 HOH HOH . F 3 HOH B 6 156 22 HOH HOH . F 3 HOH B 7 157 23 HOH HOH . F 3 HOH B 8 158 24 HOH HOH . F 3 HOH B 9 159 25 HOH HOH . F 3 HOH B 10 160 27 HOH HOH . F 3 HOH B 11 161 39 HOH HOH . F 3 HOH B 12 162 42 HOH HOH . F 3 HOH B 13 163 43 HOH HOH . F 3 HOH B 14 164 48 HOH HOH . F 3 HOH B 15 165 54 HOH HOH . F 3 HOH B 16 166 55 HOH HOH . F 3 HOH B 17 167 56 HOH HOH . F 3 HOH B 18 168 57 HOH HOH . F 3 HOH B 19 169 58 HOH HOH . F 3 HOH B 20 170 59 HOH HOH . F 3 HOH B 21 171 60 HOH HOH . F 3 HOH B 22 172 61 HOH HOH . F 3 HOH B 23 173 69 HOH HOH . F 3 HOH B 24 174 70 HOH HOH . F 3 HOH B 25 175 72 HOH HOH . F 3 HOH B 26 176 76 HOH HOH . F 3 HOH B 27 177 77 HOH HOH . F 3 HOH B 28 178 78 HOH HOH . F 3 HOH B 29 179 79 HOH HOH . F 3 HOH B 30 180 86 HOH HOH . F 3 HOH B 31 181 89 HOH HOH . F 3 HOH B 32 182 90 HOH HOH . F 3 HOH B 33 183 91 HOH HOH . F 3 HOH B 34 184 94 HOH HOH . F 3 HOH B 35 185 99 HOH HOH . F 3 HOH B 36 186 101 HOH HOH . F 3 HOH B 37 187 102 HOH HOH . F 3 HOH B 38 188 103 HOH HOH . F 3 HOH B 39 189 104 HOH HOH . F 3 HOH B 40 190 105 HOH HOH . F 3 HOH B 41 191 106 HOH HOH . F 3 HOH B 42 192 108 HOH HOH . F 3 HOH B 43 193 110 HOH HOH . F 3 HOH B 44 194 115 HOH HOH . F 3 HOH B 45 195 118 HOH HOH . F 3 HOH B 46 196 119 HOH HOH . F 3 HOH B 47 197 120 HOH HOH . F 3 HOH B 48 198 121 HOH HOH . F 3 HOH B 49 199 122 HOH HOH . F 3 HOH B 50 200 125 HOH HOH . F 3 HOH B 51 201 127 HOH HOH . F 3 HOH B 52 202 128 HOH HOH . F 3 HOH B 53 203 131 HOH HOH . F 3 HOH B 54 204 135 HOH HOH . F 3 HOH B 55 205 143 HOH HOH . F 3 HOH B 56 206 144 HOH HOH . F 3 HOH B 57 207 153 HOH HOH . F 3 HOH B 58 208 154 HOH HOH . F 3 HOH B 59 209 155 HOH HOH . F 3 HOH B 60 210 156 HOH HOH . F 3 HOH B 61 211 157 HOH HOH . F 3 HOH B 62 212 158 HOH HOH . F 3 HOH B 63 213 159 HOH HOH . F 3 HOH B 64 214 160 HOH HOH . F 3 HOH B 65 215 161 HOH HOH . F 3 HOH B 66 216 162 HOH HOH . F 3 HOH B 67 217 163 HOH HOH . F 3 HOH B 68 218 164 HOH HOH . F 3 HOH B 69 219 165 HOH HOH . F 3 HOH B 70 220 166 HOH HOH . F 3 HOH B 71 221 167 HOH HOH . F 3 HOH B 72 222 171 HOH HOH . F 3 HOH B 73 223 174 HOH HOH . F 3 HOH B 74 224 175 HOH HOH . F 3 HOH B 75 225 181 HOH HOH . F 3 HOH B 76 226 186 HOH HOH . F 3 HOH B 77 227 187 HOH HOH . F 3 HOH B 78 228 188 HOH HOH . F 3 HOH B 79 229 194 HOH HOH . F 3 HOH B 80 230 195 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 2 24.418 53.854 3.694 1 17.9 ? CHA HEM 150 B 1 HETATM 2 C CHB HEM . . . D 2 27.779 55.723 6.523 1 16.04 ? CHB HEM 150 B 1 HETATM 3 C CHC HEM . . . D 2 31.068 53.1 4.313 1 9.78 ? CHC HEM 150 B 1 HETATM 4 C CHD HEM . . . D 2 27.746 51.394 1.347 1 11.52 ? CHD HEM 150 B 1 HETATM 5 C C1A HEM . . . D 2 25.042 54.634 4.677 1 20.53 ? C1A HEM 150 B 1 HETATM 6 C C2A HEM . . . D 2 24.361 55.389 5.612 1 21.5 ? C2A HEM 150 B 1 HETATM 7 C C3A HEM . . . D 2 25.338 55.96 6.406 1 22.23 ? C3A HEM 150 B 1 HETATM 8 C C4A HEM . . . D 2 26.533 55.47 5.926 1 21.97 ? C4A HEM 150 B 1 HETATM 9 C CMA HEM . . . D 2 25.142 56.936 7.549 1 22.17 ? CMA HEM 150 B 1 HETATM 10 C CAA HEM . . . D 2 22.867 55.557 5.753 1 16.87 ? CAA HEM 150 B 1 HETATM 11 C CBA HEM . . . D 2 22.267 54.586 6.749 1 19.63 ? CBA HEM 150 B 1 HETATM 12 C CGA HEM . . . D 2 20.848 54.952 7.119 1 27.24 ? CGA HEM 150 B 1 HETATM 13 O O1A HEM . . . D 2 20.631 55.391 8.272 1 32.14 ? O1A HEM 150 B 1 HETATM 14 O O2A HEM . . . D 2 19.954 54.824 6.257 1 26.81 ? O2A HEM 150 B 1 HETATM 15 C C1B HEM . . . D 2 29.03 55.248 6.111 1 14.47 ? C1B HEM 150 B 1 HETATM 16 C C2B HEM . . . D 2 30.237 55.613 6.695 1 11.42 ? C2B HEM 150 B 1 HETATM 17 C C3B HEM . . . D 2 31.181 54.834 6.045 1 10.58 ? C3B HEM 150 B 1 HETATM 18 C C4B HEM . . . D 2 30.487 54.084 5.12 1 12.24 ? C4B HEM 150 B 1 HETATM 19 C CMB HEM . . . D 2 30.463 56.746 7.692 1 11.12 ? CMB HEM 150 B 1 HETATM 20 C CAB HEM . . . D 2 32.562 54.754 6.284 1 13.48 ? CAB HEM 150 B 1 HETATM 21 C CBB HEM . . . D 2 33.199 55.245 7.493 1 12.77 ? CBB HEM 150 B 1 HETATM 22 C C1C HEM . . . D 2 30.446 52.347 3.319 1 10.51 ? C1C HEM 150 B 1 HETATM 23 C C2C HEM . . . D 2 31.102 51.414 2.545 1 10.4 ? C2C HEM 150 B 1 HETATM 24 C C3C HEM . . . D 2 30.134 50.968 1.65 1 12.3 ? C3C HEM 150 B 1 HETATM 25 C C4C HEM . . . D 2 28.973 51.614 1.982 1 14.66 ? C4C HEM 150 B 1 HETATM 26 C CMC HEM . . . D 2 32.574 51.046 2.631 1 8.07 ? CMC HEM 150 B 1 HETATM 27 C CAC HEM . . . D 2 30.267 50.059 0.604 1 13.95 ? CAC HEM 150 B 1 HETATM 28 C CBC HEM . . . D 2 31.493 49.346 0.307 1 13.79 ? CBC HEM 150 B 1 HETATM 29 C C1D HEM . . . D 2 26.514 51.969 1.67 1 17.55 ? C1D HEM 150 B 1 HETATM 30 C C2D HEM . . . D 2 25.324 51.653 1.051 1 20.46 ? C2D HEM 150 B 1 HETATM 31 C C3D HEM . . . D 2 24.347 52.275 1.804 1 23.08 ? C3D HEM 150 B 1 HETATM 32 C C4D HEM . . . D 2 25.033 53.029 2.741 1 20.06 ? C4D HEM 150 B 1 HETATM 33 C CMD HEM . . . D 2 25.13 50.808 -0.188 1 20.67 ? CMD HEM 150 B 1 HETATM 34 C CAD HEM . . . D 2 22.847 52.141 1.65 1 23.75 ? CAD HEM 150 B 1 HETATM 35 C CBD HEM . . . D 2 22.238 51.192 2.67 1 26.76 ? CBD HEM 150 B 1 HETATM 36 C CGD HEM . . . D 2 20.778 50.9 2.387 1 30.06 ? CGD HEM 150 B 1 HETATM 37 O O1D HEM . . . D 2 19.977 51.854 2.308 1 31.8 ? O1D HEM 150 B 1 HETATM 38 O O2D HEM . . . D 2 20.435 49.712 2.224 1 28.23 ? O2D HEM 150 B 1 HETATM 39 N NA HEM . . . D 2 26.367 54.723 4.828 1 21.78 ? NA HEM 150 B 1 HETATM 40 N NB HEM . . . D 2 29.192 54.412 5.08 1 14.42 ? NB HEM 150 B 1 HETATM 41 N NC HEM . . . D 2 29.152 52.478 2.988 1 15.97 ? NC HEM 150 B 1 HETATM 42 N ND HEM . . . D 2 26.352 52.879 2.636 1 18.6 ? ND HEM 150 B 1 HETATM 43 FE FE HEM . . . D 2 27.775 53.861 3.695 1 14.4 ? FE HEM 150 B 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 96 _model_server_stats.create_model_time_ms 54 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #