data_1A7Z # _model_server_result.job_id VaCiaRSXMlHr5ldL5yoIqg _model_server_result.datetime_utc '2024-11-15 20:32:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a7z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":106}' # _entry.id 1A7Z # _exptl.entry_id 1A7Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.112 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZENE _entity.pdbx_number_of_molecules 20 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1A7Z _cell.length_a 14.803 _cell.length_b 24.78 _cell.length_c 65.059 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A7Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,W 1 1 B,K,L,M,N,O,P,Q,R,S,T,U,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C CTH 1 A CTH 1 1_555 A N DVA 2 A DVA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale2 A OG1 CTH 1 A CTH 1 1_555 A C MAA 5 A MAA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale3 A N CTH 1 A CTH 1 1_555 A C0 PXZ 6 A PXZ 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale4 A C DVA 2 A DVA 2 1_555 A N POM 3 A POM 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale5 A C POM 3 A POM 3 1_555 A N SAR 4 A SAR 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale6 A C SAR 4 A SAR 4 1_555 A N MAA 5 A MAA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.369 ? covale ? covale7 A C0' PXZ 6 A PXZ 6 1_555 A N THR 7 A THR 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale8 A C THR 7 A THR 7 1_555 A N DVA 8 A DVA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale9 A OG1 THR 7 A THR 7 1_555 A C MVA 11 A MVA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale10 A C DVA 8 A DVA 8 1_555 A N H5M 9 A H5M 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? covale ? covale11 A C H5M 9 A H5M 9 1_555 A N SAR 10 A SAR 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale12 A C SAR 10 A SAR 10 1_555 A N MVA 11 A MVA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale13 B C CTH 1 B CTH 1 1_555 B N DVA 2 B DVA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale14 B OG1 CTH 1 B CTH 1 1_555 B C MAA 5 B MAA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? covale ? covale15 B N CTH 1 B CTH 1 1_555 B C0 PXZ 6 B PXZ 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale16 B C DVA 2 B DVA 2 1_555 B N POM 3 B POM 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale17 B C POM 3 B POM 3 1_555 B N SAR 4 B SAR 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? covale ? covale18 B C SAR 4 B SAR 4 1_555 B N MAA 5 B MAA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale19 B C0' PXZ 6 B PXZ 6 1_555 B N THR 7 B THR 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale20 B C THR 7 B THR 7 1_555 B N DVA 8 B DVA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale21 B OG1 THR 7 B THR 7 1_555 B C MVA 11 B MVA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? covale ? covale22 B C DVA 8 B DVA 8 1_555 B N H5M 9 B H5M 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale23 B C H5M 9 B H5M 9 1_555 B N SAR 10 B SAR 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale24 B C SAR 10 B SAR 10 1_555 B N MVA 11 B MVA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? # _chem_comp.formula 'C6 H6' _chem_comp.formula_weight 78.112 _chem_comp.id BNZ _chem_comp.mon_nstd_flag . _chem_comp.name BENZENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BNZ doub 1 n y C1 C6 BNZ sing 2 n y C1 H1 BNZ sing 3 n n C2 C3 BNZ sing 4 n y C2 H2 BNZ sing 5 n n C3 C4 BNZ doub 6 n y C3 H3 BNZ sing 7 n n C4 C5 BNZ sing 8 n y C4 H4 BNZ sing 9 n n C5 C6 BNZ doub 10 n y C5 H5 BNZ sing 11 n n C6 H6 BNZ sing 12 n n # _atom_sites.entry_id 1A7Z _atom_sites.fract_transf_matrix[1][1] 0.067554 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.040355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BNZ A 1 101 101 BNZ BNZ . D 2 BNZ A 1 109 109 BNZ BNZ . E 2 BNZ A 1 110 110 BNZ BNZ . F 2 BNZ A 1 115 115 BNZ BNZ . G 2 BNZ A 1 116 116 BNZ BNZ . H 2 BNZ A 1 118 118 BNZ BNZ . I 2 BNZ A 1 119 119 BNZ BNZ . J 2 BNZ A 1 120 120 BNZ BNZ . K 2 BNZ B 1 102 102 BNZ BNZ . L 2 BNZ B 1 103 103 BNZ BNZ . M 2 BNZ B 1 104 104 BNZ BNZ . N 2 BNZ B 1 105 105 BNZ BNZ . O 2 BNZ B 1 106 106 BNZ BNZ . P 2 BNZ B 1 107 107 BNZ BNZ . Q 2 BNZ B 1 108 108 BNZ BNZ . R 2 BNZ B 1 111 111 BNZ BNZ . S 2 BNZ B 1 112 112 BNZ BNZ . T 2 BNZ B 1 113 113 BNZ BNZ . U 2 BNZ B 1 114 114 BNZ BNZ . V 2 BNZ B 1 117 117 BNZ BNZ . W 3 HOH A 1 2001 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BNZ . . . O 2 14.433 9.972 4.476 1 10.08 ? C1 BNZ 106 B 1 HETATM 2 C C2 BNZ . . . O 2 13.152 9.438 4.594 1 9.3 ? C2 BNZ 106 B 1 HETATM 3 C C3 BNZ . . . O 2 12.129 10.2 5.154 1 9.47 ? C3 BNZ 106 B 1 HETATM 4 C C4 BNZ . . . O 2 12.386 11.472 5.634 1 10.77 ? C4 BNZ 106 B 1 HETATM 5 C C5 BNZ . . . O 2 13.663 12.02 5.481 1 10.98 ? C5 BNZ 106 B 1 HETATM 6 C C6 BNZ . . . O 2 14.67 11.242 4.934 1 10.87 ? C6 BNZ 106 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #