data_1A86 # _model_server_result.job_id 4NKCM7FLfhOXHCF9Gt3qOw _model_server_result.datetime_utc '2024-11-22 23:04:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a86 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 1A86 # _exptl.entry_id 1A86 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 379.408 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-benzyl-N~2~-[(2R)-2-(hydroxycarbamoyl)-4-methylpentanoyl]-L-alpha-asparagine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1A86 _cell.length_a 33.14 _cell.length_b 69.43 _cell.length_c 72.62 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A86 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O1 0ZB . A 0ZB 1 1_555 F ZN ZN . A ZN 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc2 A O ASP 53 A ASP 137 1_555 C CA CA . A CA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc3 A NE2 HIS 63 A HIS 147 1_555 E ZN ZN . A ZN 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc4 A OD2 ASP 65 A ASP 149 1_555 E ZN ZN . A ZN 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc5 A OD1 ASP 70 A ASP 154 1_555 D CA CA . A CA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc6 A O GLY 71 A GLY 155 1_555 D CA CA . A CA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc7 A O ASN 73 A ASN 157 1_555 D CA CA . A CA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc8 A O ILE 75 A ILE 159 1_555 D CA CA . A CA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc9 A NE2 HIS 78 A HIS 162 1_555 E ZN ZN . A ZN 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc10 A O GLY 85 A GLY 169 1_555 C CA CA . A CA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc11 A O GLY 87 A GLY 171 1_555 C CA CA . A CA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc12 A OD1 ASP 89 A ASP 173 1_555 C CA CA . A CA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc13 A ND1 HIS 91 A HIS 175 1_555 E ZN ZN . A ZN 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc14 A OD2 ASP 93 A ASP 177 1_555 D CA CA . A CA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc15 A OE2 GLU 96 A GLU 180 1_555 D CA CA . A CA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc16 A NE2 HIS 113 A HIS 197 1_555 F ZN ZN . A ZN 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc17 A NE2 HIS 117 A HIS 201 1_555 F ZN ZN . A ZN 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc18 A NE2 HIS 123 A HIS 207 1_555 F ZN ZN . A ZN 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? # _chem_comp.formula 'C18 H25 N3 O6' _chem_comp.formula_weight 379.408 _chem_comp.id 0ZB _chem_comp.mon_nstd_flag . _chem_comp.name N-benzyl-N~2~-[(2R)-2-(hydroxycarbamoyl)-4-methylpentanoyl]-L-alpha-asparagine _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N OH 0ZB sing 1 n n N C1 0ZB sing 2 n n N HN 0ZB sing 3 n n OH HOH 0ZB sing 4 n n C1 O1 0ZB doub 5 n n C1 CA 0ZB sing 6 n n CA CB 0ZB sing 7 n n CA C 0ZB sing 8 n n CA HA 0ZB sing 9 n n CB CG 0ZB sing 10 n n CB HB1 0ZB sing 11 n n CB HB2 0ZB sing 12 n n CG CD1 0ZB sing 13 n n CG CD2 0ZB sing 14 n n CG HG 0ZB sing 15 n n CD1 HD11 0ZB sing 16 n n CD1 HD12 0ZB sing 17 n n CD1 HD13 0ZB sing 18 n n CD2 HD21 0ZB sing 19 n n CD2 HD22 0ZB sing 20 n n CD2 HD23 0ZB sing 21 n n C O 0ZB doub 22 n n N1 CA1 0ZB sing 23 n n N1 H 0ZB sing 24 n n CA1 C2 0ZB sing 25 n n CA1 CB1 0ZB sing 26 n n CA1 HA1 0ZB sing 27 n n C2 O2 0ZB doub 28 n n CB1 CG1 0ZB sing 29 n n CB1 HB21 0ZB sing 30 n n CB1 HB3 0ZB sing 31 n n CG1 OD1 0ZB doub 32 n n CG1 OD2 0ZB sing 33 n n OD2 HD2 0ZB sing 34 n n N2 C3 0ZB sing 35 n n N2 HN2 0ZB sing 36 n n C3 C11 0ZB sing 37 n n C3 H1 0ZB sing 38 n n C3 H2A 0ZB sing 39 n n C11 C21 0ZB doub 40 n y C11 C6 0ZB sing 41 n y C21 C31 0ZB sing 42 n y C21 H2 0ZB sing 43 n n C31 C4 0ZB doub 44 n y C31 H3 0ZB sing 45 n n C4 C5 0ZB sing 46 n y C4 H4 0ZB sing 47 n n C5 C6 0ZB doub 48 n y C5 H5 0ZB sing 49 n n C6 H6 0ZB sing 50 n n C N1 0ZB sing 51 n n C2 N2 0ZB sing 52 n n # _atom_sites.entry_id 1A86 _atom_sites.fract_transf_matrix[1][1] 0.030175 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01377 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0ZB A 1 1 1 0ZB HMI . C 3 CA A 1 996 996 CA CA . D 3 CA A 1 997 997 CA CA . E 4 ZN A 1 998 998 ZN ZN . F 4 ZN A 1 999 999 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 0ZB . . . B 2 25.165 59.639 53.32 1 45.04 ? N 0ZB 1 A 1 HETATM 2 O OH 0ZB . . . B 2 24.359 58.882 54.173 1 45.06 ? OH 0ZB 1 A 1 HETATM 3 C C1 0ZB . . . B 2 26.383 59.371 53.747 1 45.2 ? C1 0ZB 1 A 1 HETATM 4 O O1 0ZB . . . B 2 26.68 58.242 54.183 1 44.71 ? O1 0ZB 1 A 1 HETATM 5 C CA 0ZB . . . B 2 27.438 60.437 53.371 1 45.57 ? CA 0ZB 1 A 1 HETATM 6 C CB 0ZB . . . B 2 28.569 60.518 54.416 1 45.7 ? CB 0ZB 1 A 1 HETATM 7 C CG 0ZB . . . B 2 28.407 61.439 55.642 1 45.73 ? CG 0ZB 1 A 1 HETATM 8 C CD1 0ZB . . . B 2 28.401 62.896 55.22 1 45.93 ? CD1 0ZB 1 A 1 HETATM 9 C CD2 0ZB . . . B 2 27.142 61.131 56.416 1 45.94 ? CD2 0ZB 1 A 1 HETATM 10 C C 0ZB . . . B 2 28.019 60.378 51.955 1 45.78 ? C 0ZB 1 A 1 HETATM 11 O O 0ZB . . . B 2 27.903 61.336 51.185 1 45.57 ? O 0ZB 1 A 1 HETATM 12 N N1 0ZB . . . B 2 28.619 59.248 51.603 1 46.27 ? N1 0ZB 1 A 1 HETATM 13 C CA1 0ZB . . . B 2 29.174 59.096 50.269 1 46.92 ? CA1 0ZB 1 A 1 HETATM 14 C C2 0ZB . . . B 2 28.214 58.27 49.404 1 47.31 ? C2 0ZB 1 A 1 HETATM 15 O O2 0ZB . . . B 2 28.573 57.816 48.312 1 47.41 ? O2 0ZB 1 A 1 HETATM 16 C CB1 0ZB . . . B 2 30.555 58.437 50.332 1 46.95 ? CB1 0ZB 1 A 1 HETATM 17 C CG1 0ZB . . . B 2 31.315 58.546 49.025 1 47 ? CG1 0ZB 1 A 1 HETATM 18 O OD1 0ZB . . . B 2 31.839 59.64 48.724 0 46.98 ? OD1 0ZB 1 A 1 HETATM 19 O OD2 0ZB . . . B 2 31.389 57.533 48.302 1 47 ? OD2 0ZB 1 A 1 HETATM 20 N N2 0ZB . . . B 2 26.994 58.071 49.902 1 47.48 ? N2 0ZB 1 A 1 HETATM 21 C C3 0ZB . . . B 2 25.938 57.328 49.221 1 47.7 ? C3 0ZB 1 A 1 HETATM 22 C C11 0ZB . . . B 2 25.932 55.84 48.983 1 47.98 ? C11 0ZB 1 A 1 HETATM 23 C C21 0ZB . . . B 2 25.116 55.283 47.987 1 48.11 ? C21 0ZB 1 A 1 HETATM 24 C C31 0ZB . . . B 2 25.08 53.904 47.788 1 48.53 ? C31 0ZB 1 A 1 HETATM 25 C C4 0ZB . . . B 2 25.861 53.049 48.582 1 48.64 ? C4 0ZB 1 A 1 HETATM 26 C C5 0ZB . . . B 2 26.682 53.594 49.577 1 48.39 ? C5 0ZB 1 A 1 HETATM 27 C C6 0ZB . . . B 2 26.71 54.985 49.769 1 48.05 ? C6 0ZB 1 A 1 HETATM 28 H HN 0ZB . . . B 2 24.972 60.597 53.118 0 0 ? HN 0ZB 1 A 1 HETATM 29 H HOH 0ZB . . . B 2 23.793 59.531 54.65 0 0 ? HOH 0ZB 1 A 1 HETATM 30 H H 0ZB . . . B 2 28.771 58.506 52.226 0 0 ? H 0ZB 1 A 1 HETATM 31 H HN2 0ZB . . . B 2 26.791 58.49 50.751 0 0 ? HN2 0ZB 1 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #