data_1A8G # _model_server_result.job_id xffA_XtZ5FDfaQdbAYTHZw _model_server_result.datetime_utc '2025-03-06 02:40:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a8g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":100}' # _entry.id 1A8G # _exptl.entry_id 1A8G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 825.989 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'benzyl [(1R)-1-({(1S,2S,3S)-1-benzyl-2-hydroxy-4-({(1S)-1-[(2-hydroxy-4-methoxybenzyl)carbamoyl]-2-methylpropyl}amino)-3-[(4-methoxybenzyl)amino]-4-oxobutyl}carbamoyl)-2,2-dimethylpropyl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1A8G _cell.length_a 63.1 _cell.length_b 63.1 _cell.length_c 83.6 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A8G _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C46 H59 N5 O9' _chem_comp.formula_weight 825.989 _chem_comp.id 2Z4 _chem_comp.mon_nstd_flag . _chem_comp.name 'benzyl [(1R)-1-({(1S,2S,3S)-1-benzyl-2-hydroxy-4-({(1S)-1-[(2-hydroxy-4-methoxybenzyl)carbamoyl]-2-methylpropyl}amino)-3-[(4-methoxybenzyl)amino]-4-oxobutyl}carbamoyl)-2,2-dimethylpropyl]carbamate' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms SDZ283-910 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 2Z4 doub 1 n n C1 O2 2Z4 sing 2 n n O2 C2 2Z4 sing 3 n n C2 C3 2Z4 sing 4 n n C2 H21 2Z4 sing 5 n n C2 H22 2Z4 sing 6 n n C3 C4 2Z4 doub 7 n y C3 C8 2Z4 sing 8 n y C4 C5 2Z4 sing 9 n y C4 H41 2Z4 sing 10 n n C5 C6 2Z4 doub 11 n y C5 H51 2Z4 sing 12 n n C6 C7 2Z4 sing 13 n y C6 H61 2Z4 sing 14 n n C7 C8 2Z4 doub 15 n y C7 H71 2Z4 sing 16 n n C8 H81 2Z4 sing 17 n n N CA 2Z4 sing 18 n n N H 2Z4 sing 19 n n CA CB 2Z4 sing 20 n n CA C 2Z4 sing 21 n n CA HA 2Z4 sing 22 n n CB CG1 2Z4 sing 23 n n CB CG2 2Z4 sing 24 n n CB CG3 2Z4 sing 25 n n CG1 HG11 2Z4 sing 26 n n CG1 HG12 2Z4 sing 27 n n CG1 HG13 2Z4 sing 28 n n CG2 HG21 2Z4 sing 29 n n CG2 HG22 2Z4 sing 30 n n CG2 HG23 2Z4 sing 31 n n CG3 HG31 2Z4 sing 32 n n CG3 HG32 2Z4 sing 33 n n CG3 HG33 2Z4 sing 34 n n C O 2Z4 doub 35 n n N1 CA1 2Z4 sing 36 n n N1 HN1 2Z4 sing 37 n n CA1 CB1 2Z4 sing 38 n n CA1 CM 2Z4 sing 39 n n CA1 HA1 2Z4 sing 40 n n CB1 CG11 2Z4 sing 41 n n CB1 HB11 2Z4 sing 42 n n CB1 HB12 2Z4 sing 43 n n CG11 CD1 2Z4 doub 44 n y CG11 CD2 2Z4 sing 45 n y CD1 CE1 2Z4 sing 46 n y CD1 HD1 2Z4 sing 47 n n CD2 CE2 2Z4 doub 48 n y CD2 HD2 2Z4 sing 49 n n CE1 CZ1 2Z4 doub 50 n y CE1 HE1 2Z4 sing 51 n n CE2 CZ1 2Z4 sing 52 n y CE2 HE2 2Z4 sing 53 n n CZ1 HZ1 2Z4 sing 54 n n CM OH 2Z4 sing 55 n n CM CA2 2Z4 sing 56 n n CM HM 2Z4 sing 57 n n OH HOH 2Z4 sing 58 n n N2 CA2 2Z4 sing 59 n n N2 CB2 2Z4 sing 60 n n N2 HN2 2Z4 sing 61 n n CA2 C9 2Z4 sing 62 n n CA2 HA2 2Z4 sing 63 n n CB2 CG21 2Z4 sing 64 n n CB2 HB21 2Z4 sing 65 n n CB2 HB22 2Z4 sing 66 n n CG21 CD4 2Z4 doub 67 n y CG21 CD3 2Z4 sing 68 n y CD4 CE3 2Z4 sing 69 n y CD4 HD4 2Z4 sing 70 n n CE3 CZ2 2Z4 doub 71 n y CE3 HE3 2Z4 sing 72 n n CD3 CE4 2Z4 doub 73 n y CD3 HD3 2Z4 sing 74 n n CE4 CZ2 2Z4 sing 75 n y CE4 HE4 2Z4 sing 76 n n CZ2 OE2 2Z4 sing 77 n n OE2 CM2 2Z4 sing 78 n n CM2 HM21 2Z4 sing 79 n n CM2 HM22 2Z4 sing 80 n n CM2 HM23 2Z4 sing 81 n n C9 O3 2Z4 doub 82 n n N3 CA3 2Z4 sing 83 n n N3 H1 2Z4 sing 84 n n CA3 CC 2Z4 sing 85 n n CA3 CB3 2Z4 sing 86 n n CA3 HA3 2Z4 sing 87 n n CC O4 2Z4 doub 88 n n CB3 CG12 2Z4 sing 89 n n CB3 CG22 2Z4 sing 90 n n CB3 HB 2Z4 sing 91 n n CG12 HG14 2Z4 sing 92 n n CG12 HG15 2Z4 sing 93 n n CG12 HG16 2Z4 sing 94 n n CG22 HG24 2Z4 sing 95 n n CG22 HG25 2Z4 sing 96 n n CG22 HG26 2Z4 sing 97 n n N4 CB4 2Z4 sing 98 n n N4 HN11 2Z4 sing 99 n n CB4 CG 2Z4 sing 100 n n CB4 HB1 2Z4 sing 101 n n CB4 HB2 2Z4 sing 102 n n CG CD11 2Z4 doub 103 n y CG CD21 2Z4 sing 104 n y CD11 CE11 2Z4 sing 105 n y CD11 OH1 2Z4 sing 106 n n CE11 CZ 2Z4 doub 107 n y CE11 HE11 2Z4 sing 108 n n CD21 CE21 2Z4 doub 109 n y CD21 HD21 2Z4 sing 110 n n CE21 CZ 2Z4 sing 111 n y CE21 HE21 2Z4 sing 112 n n CZ OE 2Z4 sing 113 n n OE CM1 2Z4 sing 114 n n CM1 HM1 2Z4 sing 115 n n CM1 HM2 2Z4 sing 116 n n CM1 HM3 2Z4 sing 117 n n OH1 HOH1 2Z4 sing 118 n n C1 N 2Z4 sing 119 n n C N1 2Z4 sing 120 n n C9 N3 2Z4 sing 121 n n CC N4 2Z4 sing 122 n n # _atom_sites.entry_id 1A8G _atom_sites.fract_transf_matrix[1][1] 0.015848 _atom_sites.fract_transf_matrix[1][2] 0.00915 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0183 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2Z4 A 1 100 1 2Z4 CBZ . D 3 HOH A 1 101 3 HOH HOH . D 3 HOH A 2 102 4 HOH HOH . D 3 HOH A 3 103 5 HOH HOH . D 3 HOH A 4 104 6 HOH HOH . D 3 HOH A 5 105 7 HOH HOH . D 3 HOH A 6 106 8 HOH HOH . D 3 HOH A 7 107 9 HOH HOH . D 3 HOH A 8 108 10 HOH HOH . D 3 HOH A 9 109 11 HOH HOH . D 3 HOH A 10 110 12 HOH HOH . D 3 HOH A 11 111 13 HOH HOH . D 3 HOH A 12 112 14 HOH HOH . D 3 HOH A 13 113 15 HOH HOH . D 3 HOH A 14 114 16 HOH HOH . D 3 HOH A 15 115 17 HOH HOH . D 3 HOH A 16 116 19 HOH HOH . D 3 HOH A 17 117 20 HOH HOH . D 3 HOH A 18 118 21 HOH HOH . D 3 HOH A 19 119 22 HOH HOH . D 3 HOH A 20 120 23 HOH HOH . D 3 HOH A 21 121 24 HOH HOH . D 3 HOH A 22 122 25 HOH HOH . D 3 HOH A 23 123 26 HOH HOH . D 3 HOH A 24 124 27 HOH HOH . D 3 HOH A 25 125 28 HOH HOH . D 3 HOH A 26 126 29 HOH HOH . D 3 HOH A 27 127 30 HOH HOH . D 3 HOH A 28 128 31 HOH HOH . D 3 HOH A 29 129 32 HOH HOH . D 3 HOH A 30 130 33 HOH HOH . D 3 HOH A 31 131 34 HOH HOH . D 3 HOH A 32 132 35 HOH HOH . D 3 HOH A 33 133 36 HOH HOH . D 3 HOH A 34 134 49 HOH HOH . D 3 HOH A 35 135 2 HOH HOH . D 3 HOH A 36 136 1 HOH HOH . E 3 HOH B 1 100 18 HOH HOH . E 3 HOH B 2 101 37 HOH HOH . E 3 HOH B 3 102 38 HOH HOH . E 3 HOH B 4 103 39 HOH HOH . E 3 HOH B 5 104 40 HOH HOH . E 3 HOH B 6 105 41 HOH HOH . E 3 HOH B 7 106 42 HOH HOH . E 3 HOH B 8 107 43 HOH HOH . E 3 HOH B 9 108 44 HOH HOH . E 3 HOH B 10 109 45 HOH HOH . E 3 HOH B 11 110 46 HOH HOH . E 3 HOH B 12 111 47 HOH HOH . E 3 HOH B 13 112 48 HOH HOH . E 3 HOH B 14 113 50 HOH HOH . E 3 HOH B 15 114 51 HOH HOH . E 3 HOH B 16 115 52 HOH HOH . E 3 HOH B 17 116 53 HOH HOH . E 3 HOH B 18 117 54 HOH HOH . E 3 HOH B 19 118 55 HOH HOH . E 3 HOH B 20 119 56 HOH HOH . E 3 HOH B 21 120 57 HOH HOH . E 3 HOH B 22 121 58 HOH HOH . E 3 HOH B 23 122 59 HOH HOH . E 3 HOH B 24 123 60 HOH HOH . E 3 HOH B 25 124 61 HOH HOH . E 3 HOH B 26 125 62 HOH HOH . E 3 HOH B 27 126 63 HOH HOH . E 3 HOH B 28 127 64 HOH HOH . E 3 HOH B 29 128 65 HOH HOH . E 3 HOH B 30 129 66 HOH HOH . E 3 HOH B 31 130 67 HOH HOH . E 3 HOH B 32 131 68 HOH HOH . E 3 HOH B 33 132 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 2Z4 . . . C 2 -6.231 18.084 22.614 1 22.32 ? C1 2Z4 100 A 1 HETATM 2 O O1 2Z4 . . . C 2 -7.007 18.999 22.315 1 20.43 ? O1 2Z4 100 A 1 HETATM 3 O O2 2Z4 . . . C 2 -5.14 17.807 21.78 1 28.72 ? O2 2Z4 100 A 1 HETATM 4 C C2 2Z4 . . . C 2 -5.604 17.093 20.613 1 35.62 ? C2 2Z4 100 A 1 HETATM 5 C C3 2Z4 . . . C 2 -4.701 16.493 19.535 1 36.08 ? C3 2Z4 100 A 1 HETATM 6 C C4 2Z4 . . . C 2 -3.446 15.958 19.845 1 37.4 ? C4 2Z4 100 A 1 HETATM 7 C C5 2Z4 . . . C 2 -2.617 15.445 18.823 1 38.87 ? C5 2Z4 100 A 1 HETATM 8 C C6 2Z4 . . . C 2 -3.035 15.472 17.487 1 33.14 ? C6 2Z4 100 A 1 HETATM 9 C C7 2Z4 . . . C 2 -4.292 16.002 17.178 1 36.14 ? C7 2Z4 100 A 1 HETATM 10 C C8 2Z4 . . . C 2 -5.112 16.509 18.2 1 33.07 ? C8 2Z4 100 A 1 HETATM 11 N N 2Z4 . . . C 2 -6.76 17.067 23.253 1 17.02 ? N 2Z4 100 A 1 HETATM 12 C CA 2Z4 . . . C 2 -8.14 17.078 23.695 1 17.96 ? CA 2Z4 100 A 1 HETATM 13 C CB 2Z4 . . . C 2 -8.92 16.179 22.691 1 19.51 ? CB 2Z4 100 A 1 HETATM 14 C CG1 2Z4 . . . C 2 -10.32 15.871 23.171 1 15.51 ? CG1 2Z4 100 A 1 HETATM 15 C CG2 2Z4 . . . C 2 -9.078 16.939 21.401 1 14.38 ? CG2 2Z4 100 A 1 HETATM 16 C CG3 2Z4 . . . C 2 -8.252 14.829 22.382 1 20.45 ? CG3 2Z4 100 A 1 HETATM 17 C C 2Z4 . . . C 2 -8.258 16.62 25.172 1 19.29 ? C 2Z4 100 A 1 HETATM 18 O O 2Z4 . . . C 2 -7.96 15.46 25.545 1 15.25 ? O 2Z4 100 A 1 HETATM 19 N N1 2Z4 . . . C 2 -8.671 17.529 26.081 1 14.46 ? N1 2Z4 100 A 1 HETATM 20 C CA1 2Z4 . . . C 2 -8.607 17.481 27.551 1 15.76 ? CA1 2Z4 100 A 1 HETATM 21 C CB1 2Z4 . . . C 2 -7.556 18.479 28.065 1 15.82 ? CB1 2Z4 100 A 1 HETATM 22 C CG11 2Z4 . . . C 2 -6.244 18.228 27.348 1 17.62 ? CG11 2Z4 100 A 1 HETATM 23 C CD1 2Z4 . . . C 2 -5.514 17.073 27.616 1 15.3 ? CD1 2Z4 100 A 1 HETATM 24 C CD2 2Z4 . . . C 2 -5.824 19.103 26.344 1 19.3 ? CD2 2Z4 100 A 1 HETATM 25 C CE1 2Z4 . . . C 2 -4.359 16.777 26.886 1 20.66 ? CE1 2Z4 100 A 1 HETATM 26 C CE2 2Z4 . . . C 2 -4.665 18.783 25.62 1 26.71 ? CE2 2Z4 100 A 1 HETATM 27 C CZ1 2Z4 . . . C 2 -3.921 17.62 25.874 1 21.04 ? CZ1 2Z4 100 A 1 HETATM 28 C CM 2Z4 . . . C 2 -9.944 17.755 28.27 1 17.15 ? CM 2Z4 100 A 1 HETATM 29 O OH 2Z4 . . . C 2 -10.775 18.588 27.483 1 16.27 ? OH 2Z4 100 A 1 HETATM 30 N N2 2Z4 . . . C 2 -11.132 15.891 27.156 1 18.8 ? N2 2Z4 100 A 1 HETATM 31 C CA2 2Z4 . . . C 2 -10.728 16.47 28.444 1 19.51 ? CA2 2Z4 100 A 1 HETATM 32 C CB2 2Z4 . . . C 2 -12.416 15.235 26.946 1 21.11 ? CB2 2Z4 100 A 1 HETATM 33 C CG21 2Z4 . . . C 2 -12.814 14.176 27.951 1 11.24 ? CG21 2Z4 100 A 1 HETATM 34 C CD4 2Z4 . . . C 2 -12.173 12.958 27.897 1 16.12 ? CD4 2Z4 100 A 1 HETATM 35 C CE3 2Z4 . . . C 2 -12.45 11.978 28.84 1 17.81 ? CE3 2Z4 100 A 1 HETATM 36 C CD3 2Z4 . . . C 2 -13.748 14.44 28.946 1 13.26 ? CD3 2Z4 100 A 1 HETATM 37 C CE4 2Z4 . . . C 2 -14.038 13.455 29.893 1 14.98 ? CE4 2Z4 100 A 1 HETATM 38 C CZ2 2Z4 . . . C 2 -13.368 12.223 29.843 1 18.29 ? CZ2 2Z4 100 A 1 HETATM 39 O OE2 2Z4 . . . C 2 -13.506 11.229 30.804 1 26.62 ? OE2 2Z4 100 A 1 HETATM 40 C CM2 2Z4 . . . C 2 -14.754 11.109 31.528 1 32.8 ? CM2 2Z4 100 A 1 HETATM 41 C C9 2Z4 . . . C 2 -10.41 15.68 29.749 1 20.13 ? C9 2Z4 100 A 1 HETATM 42 O O3 2Z4 . . . C 2 -9.582 14.744 29.737 1 23.01 ? O3 2Z4 100 A 1 HETATM 43 N N3 2Z4 . . . C 2 -11.044 15.911 30.896 1 17.34 ? N3 2Z4 100 A 1 HETATM 44 C CA3 2Z4 . . . C 2 -10.605 15.31 32.149 1 16.42 ? CA3 2Z4 100 A 1 HETATM 45 C CC 2Z4 . . . C 2 -11.916 14.985 32.789 1 14.1 ? CC 2Z4 100 A 1 HETATM 46 O O4 2Z4 . . . C 2 -12.683 15.893 33.119 1 17.85 ? O4 2Z4 100 A 1 HETATM 47 C CB3 2Z4 . . . C 2 -9.825 16.319 33.054 1 15.47 ? CB3 2Z4 100 A 1 HETATM 48 C CG12 2Z4 . . . C 2 -9.389 15.651 34.307 1 13.26 ? CG12 2Z4 100 A 1 HETATM 49 C CG22 2Z4 . . . C 2 -8.578 16.829 32.368 1 14.32 ? CG22 2Z4 100 A 1 HETATM 50 N N4 2Z4 . . . C 2 -12.216 13.729 32.958 1 22.12 ? N4 2Z4 100 A 1 HETATM 51 C CB4 2Z4 . . . C 2 -13.306 13.374 33.823 1 34.15 ? CB4 2Z4 100 A 1 HETATM 52 C CG 2Z4 . . . C 2 -12.821 12.451 34.915 1 46.09 ? CG 2Z4 100 A 1 HETATM 53 C CD11 2Z4 . . . C 2 -12.135 12.934 36.05 1 48.41 ? CD11 2Z4 100 A 1 HETATM 54 C CE11 2Z4 . . . C 2 -11.798 12.039 37.068 1 53.29 ? CE11 2Z4 100 A 1 HETATM 55 C CD21 2Z4 . . . C 2 -13.157 11.09 34.81 1 53.37 ? CD21 2Z4 100 A 1 HETATM 56 C CE21 2Z4 . . . C 2 -12.816 10.195 35.832 1 56.85 ? CE21 2Z4 100 A 1 HETATM 57 C CZ 2Z4 . . . C 2 -12.147 10.671 36.97 1 56.69 ? CZ 2Z4 100 A 1 HETATM 58 O OE 2Z4 . . . C 2 -11.866 9.747 37.976 1 56.81 ? OE 2Z4 100 A 1 HETATM 59 C CM1 2Z4 . . . C 2 -11.701 10.251 39.304 1 57.01 ? CM1 2Z4 100 A 1 HETATM 60 O OH1 2Z4 . . . C 2 -11.765 14.299 36.195 1 40.23 ? OH1 2Z4 100 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 60 #