data_1A95 # _model_server_result.job_id 9XDlHXtmkdhqAW7rWl2IOg _model_server_result.datetime_utc '2024-11-09 02:22:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a95 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 1A95 # _exptl.entry_id 1A95 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 388.097 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-ALPHA-PYROPHOSPHORYL-2-ALPHA,3-ALPHA-DIHYDROXY-4-BETA-CYCLOPENTANE-METHANOL-5-PHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1A95 _cell.length_a 94.2 _cell.length_b 94.2 _cell.length_c 165.9 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A95 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G O2B PCP . B PCP 301 1_555 F MG MG . B MG 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc2 G O1 PCP . B PCP 301 1_555 F MG MG . B MG 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc3 G O2 PCP . B PCP 301 1_555 F MG MG . B MG 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? metalc ? metalc4 G O3 PCP . B PCP 301 1_555 F MG MG . B MG 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc5 F MG MG . B MG 308 1_555 N O HOH . B HOH 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc6 F MG MG . B MG 308 1_555 N O HOH . B HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc7 J O3 PCP . C PCP 302 1_555 I MG MG . C MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc8 J O1 PCP . C PCP 302 1_555 I MG MG . C MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc9 J O2 PCP . C PCP 302 1_555 I MG MG . C MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc10 J O2B PCP . C PCP 302 1_555 I MG MG . C MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc11 I MG MG . C MG 307 1_555 O O HOH . C HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc12 I MG MG . C MG 307 1_555 O O HOH . C HOH 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? # _chem_comp.formula 'C6 H15 O13 P3' _chem_comp.formula_weight 388.097 _chem_comp.id PCP _chem_comp.mon_nstd_flag . _chem_comp.name 1-ALPHA-PYROPHOSPHORYL-2-ALPHA,3-ALPHA-DIHYDROXY-4-BETA-CYCLOPENTANE-METHANOL-5-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CARBOXYLIC PRPP;CPRPP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PCP sing 260 n n C1 C5 PCP sing 261 n n C1 O1 PCP sing 262 n n C1 H1 PCP sing 263 n n C2 C3 PCP sing 264 n n C2 O2 PCP sing 265 n n C2 H2 PCP sing 266 n n C3 C4 PCP sing 267 n n C3 O3 PCP sing 268 n n C3 H3 PCP sing 269 n n C4 C5 PCP sing 270 n n C4 CP PCP sing 271 n n C4 H4 PCP sing 272 n n C5 H51 PCP sing 273 n n C5 H52 PCP sing 274 n n CP OP PCP sing 275 n n CP HP1 PCP sing 276 n n CP HP2 PCP sing 277 n n O1 PA PCP sing 278 n n O2 HO2 PCP sing 279 n n O3 HO3 PCP sing 280 n n OP P PCP sing 281 n n P O1P PCP doub 282 n n P O2P PCP sing 283 n n P O3P PCP sing 284 n n O2P HOP2 PCP sing 285 n n O3P HOP3 PCP sing 286 n n PA O1A PCP doub 287 n n PA O2A PCP sing 288 n n PA O3A PCP sing 289 n n O2A HOA2 PCP sing 290 n n O3A PB PCP sing 291 n n PB O1B PCP doub 292 n n PB O2B PCP sing 293 n n PB O3B PCP sing 294 n n O2B HOB2 PCP sing 295 n n O3B HOB3 PCP sing 296 n n # _atom_sites.entry_id 1A95 _atom_sites.fract_transf_matrix[1][1] 0.010616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010616 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006028 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 BO3 A 1 306 306 BO3 BO3 . F 3 MG B 1 308 308 MG MO2 . G 4 PCP B 1 301 301 PCP PCP . H 5 GUN B 1 304 304 GUN GUN . I 3 MG C 1 307 307 MG MO2 . J 4 PCP C 1 302 302 PCP PCP . K 5 GUN C 1 303 303 GUN GUN . L 2 BO3 D 1 305 305 BO3 BO3 . M 6 HOH A 1 408 408 HOH HOH . M 6 HOH A 2 411 411 HOH HOH . M 6 HOH A 3 417 417 HOH HOH . M 6 HOH A 4 420 420 HOH HOH . M 6 HOH A 5 425 425 HOH HOH . M 6 HOH A 6 434 434 HOH HOH . M 6 HOH A 7 436 436 HOH HOH . M 6 HOH A 8 437 437 HOH HOH . M 6 HOH A 9 440 440 HOH HOH . M 6 HOH A 10 442 442 HOH HOH . M 6 HOH A 11 444 444 HOH HOH . M 6 HOH A 12 448 448 HOH HOH . M 6 HOH A 13 459 459 HOH HOH . M 6 HOH A 14 461 461 HOH HOH . M 6 HOH A 15 462 462 HOH HOH . M 6 HOH A 16 467 467 HOH HOH . M 6 HOH A 17 468 468 HOH HOH . M 6 HOH A 18 469 469 HOH HOH . M 6 HOH A 19 471 471 HOH HOH . M 6 HOH A 20 475 475 HOH HOH . M 6 HOH A 21 482 482 HOH HOH . M 6 HOH A 22 483 483 HOH HOH . M 6 HOH A 23 489 489 HOH HOH . M 6 HOH A 24 491 491 HOH HOH . M 6 HOH A 25 493 493 HOH HOH . M 6 HOH A 26 495 495 HOH HOH . M 6 HOH A 27 496 496 HOH HOH . M 6 HOH A 28 504 504 HOH HOH . M 6 HOH A 29 507 507 HOH HOH . M 6 HOH A 30 510 510 HOH HOH . M 6 HOH A 31 513 513 HOH HOH . M 6 HOH A 32 514 514 HOH HOH . M 6 HOH A 33 515 515 HOH HOH . M 6 HOH A 34 518 518 HOH HOH . M 6 HOH A 35 520 520 HOH HOH . M 6 HOH A 36 523 523 HOH HOH . M 6 HOH A 37 525 525 HOH HOH . M 6 HOH A 38 527 527 HOH HOH . M 6 HOH A 39 530 530 HOH HOH . M 6 HOH A 40 531 531 HOH HOH . N 6 HOH B 1 401 401 HOH HOH . N 6 HOH B 2 403 403 HOH HOH . N 6 HOH B 3 406 406 HOH HOH . N 6 HOH B 4 410 410 HOH HOH . N 6 HOH B 5 419 419 HOH HOH . N 6 HOH B 6 427 427 HOH HOH . N 6 HOH B 7 430 430 HOH HOH . N 6 HOH B 8 435 435 HOH HOH . N 6 HOH B 9 446 446 HOH HOH . N 6 HOH B 10 447 447 HOH HOH . N 6 HOH B 11 449 449 HOH HOH . N 6 HOH B 12 457 457 HOH HOH . N 6 HOH B 13 460 460 HOH HOH . N 6 HOH B 14 466 466 HOH HOH . N 6 HOH B 15 477 477 HOH HOH . N 6 HOH B 16 478 478 HOH HOH . N 6 HOH B 17 479 479 HOH HOH . N 6 HOH B 18 480 480 HOH HOH . N 6 HOH B 19 481 481 HOH HOH . N 6 HOH B 20 484 484 HOH HOH . N 6 HOH B 21 490 490 HOH HOH . N 6 HOH B 22 492 492 HOH HOH . N 6 HOH B 23 494 494 HOH HOH . N 6 HOH B 24 497 497 HOH HOH . N 6 HOH B 25 498 498 HOH HOH . N 6 HOH B 26 503 503 HOH HOH . N 6 HOH B 27 506 506 HOH HOH . N 6 HOH B 28 512 512 HOH HOH . N 6 HOH B 29 519 519 HOH HOH . N 6 HOH B 30 522 522 HOH HOH . N 6 HOH B 31 524 524 HOH HOH . N 6 HOH B 32 535 308 HOH MO2 . N 6 HOH B 33 536 308 HOH MO2 . O 6 HOH C 1 402 402 HOH HOH . O 6 HOH C 2 405 405 HOH HOH . O 6 HOH C 3 414 414 HOH HOH . O 6 HOH C 4 415 415 HOH HOH . O 6 HOH C 5 418 418 HOH HOH . O 6 HOH C 6 421 421 HOH HOH . O 6 HOH C 7 423 423 HOH HOH . O 6 HOH C 8 424 424 HOH HOH . O 6 HOH C 9 426 426 HOH HOH . O 6 HOH C 10 428 428 HOH HOH . O 6 HOH C 11 429 429 HOH HOH . O 6 HOH C 12 431 431 HOH HOH . O 6 HOH C 13 432 432 HOH HOH . O 6 HOH C 14 441 441 HOH HOH . O 6 HOH C 15 443 443 HOH HOH . O 6 HOH C 16 445 445 HOH HOH . O 6 HOH C 17 450 450 HOH HOH . O 6 HOH C 18 453 453 HOH HOH . O 6 HOH C 19 454 454 HOH HOH . O 6 HOH C 20 456 456 HOH HOH . O 6 HOH C 21 463 463 HOH HOH . O 6 HOH C 22 472 472 HOH HOH . O 6 HOH C 23 473 473 HOH HOH . O 6 HOH C 24 474 474 HOH HOH . O 6 HOH C 25 476 476 HOH HOH . O 6 HOH C 26 485 485 HOH HOH . O 6 HOH C 27 487 487 HOH HOH . O 6 HOH C 28 499 499 HOH HOH . O 6 HOH C 29 500 500 HOH HOH . O 6 HOH C 30 508 508 HOH HOH . O 6 HOH C 31 511 511 HOH HOH . O 6 HOH C 32 517 517 HOH HOH . O 6 HOH C 33 528 528 HOH HOH . O 6 HOH C 34 533 307 HOH MO2 . O 6 HOH C 35 534 307 HOH MO2 . P 6 HOH D 1 404 404 HOH HOH . P 6 HOH D 2 407 407 HOH HOH . P 6 HOH D 3 409 409 HOH HOH . P 6 HOH D 4 412 412 HOH HOH . P 6 HOH D 5 413 413 HOH HOH . P 6 HOH D 6 416 416 HOH HOH . P 6 HOH D 7 422 422 HOH HOH . P 6 HOH D 8 433 433 HOH HOH . P 6 HOH D 9 438 438 HOH HOH . P 6 HOH D 10 439 439 HOH HOH . P 6 HOH D 11 451 451 HOH HOH . P 6 HOH D 12 452 452 HOH HOH . P 6 HOH D 13 455 455 HOH HOH . P 6 HOH D 14 458 458 HOH HOH . P 6 HOH D 15 464 464 HOH HOH . P 6 HOH D 16 465 465 HOH HOH . P 6 HOH D 17 470 470 HOH HOH . P 6 HOH D 18 486 486 HOH HOH . P 6 HOH D 19 488 488 HOH HOH . P 6 HOH D 20 501 501 HOH HOH . P 6 HOH D 21 502 502 HOH HOH . P 6 HOH D 22 505 505 HOH HOH . P 6 HOH D 23 509 509 HOH HOH . P 6 HOH D 24 516 516 HOH HOH . P 6 HOH D 25 521 521 HOH HOH . P 6 HOH D 26 526 526 HOH HOH . P 6 HOH D 27 529 529 HOH HOH . P 6 HOH D 28 532 532 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PCP . . . G 4 21.681 134.368 23.006 1 76.19 ? C1 PCP 301 B 1 HETATM 2 C C2 PCP . . . G 4 20.562 133.42 23.459 1 73.54 ? C2 PCP 301 B 1 HETATM 3 C C3 PCP . . . G 4 19.431 133.632 22.41 1 71.25 ? C3 PCP 301 B 1 HETATM 4 C C4 PCP . . . G 4 19.548 135.111 22.009 1 68.45 ? C4 PCP 301 B 1 HETATM 5 C C5 PCP . . . G 4 21.018 135.331 22.102 1 72.69 ? C5 PCP 301 B 1 HETATM 6 C CP PCP . . . G 4 18.707 136.109 22.803 1 61.19 ? CP PCP 301 B 1 HETATM 7 O O1 PCP . . . G 4 22.612 133.67 22.056 1 83.83 ? O1 PCP 301 B 1 HETATM 8 O O2 PCP . . . G 4 20.991 132.066 23.55 1 72.96 ? O2 PCP 301 B 1 HETATM 9 O O3 PCP . . . G 4 19.54 132.836 21.24 1 70.26 ? O3 PCP 301 B 1 HETATM 10 O OP PCP . . . G 4 19.092 137.483 22.54 1 51.39 ? OP PCP 301 B 1 HETATM 11 P P PCP . . . G 4 18.036 138.627 22.144 1 44.28 ? P PCP 301 B 1 HETATM 12 O O1P PCP . . . G 4 16.724 138.194 22.685 1 41.72 ? O1P PCP 301 B 1 HETATM 13 O O2P PCP . . . G 4 18.051 138.69 20.664 1 43.66 ? O2P PCP 301 B 1 HETATM 14 O O3P PCP . . . G 4 18.541 139.869 22.782 1 44.4 ? O3P PCP 301 B 1 HETATM 15 P PA PCP . . . G 4 23.88 134.385 21.485 1 89.09 ? PA PCP 301 B 1 HETATM 16 O O1A PCP . . . G 4 24.214 135.485 22.443 1 89.07 ? O1A PCP 301 B 1 HETATM 17 O O2A PCP . . . G 4 23.472 134.937 20.154 1 89.37 ? O2A PCP 301 B 1 HETATM 18 O O3A PCP . . . G 4 24.9 133.258 21.43 1 90.28 ? O3A PCP 301 B 1 HETATM 19 P PB PCP . . . G 4 24.807 131.746 21.311 1 90.03 ? PB PCP 301 B 1 HETATM 20 O O1B PCP . . . G 4 24.97 131.283 19.899 1 90.28 ? O1B PCP 301 B 1 HETATM 21 O O2B PCP . . . G 4 23.521 131.266 21.775 1 90.5 ? O2B PCP 301 B 1 HETATM 22 O O3B PCP . . . G 4 25.847 131.065 22.14 1 90.22 ? O3B PCP 301 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #