data_1A96
#
_model_server_result.job_id            xY5IkLRiZMmHrco_JnpeOg 
_model_server_result.datetime_utc      '2024-11-14 04:44:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1a96 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":302}' 
#
_entry.id    1A96 
#
_exptl.entry_id    1A96 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              388.097 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-ALPHA-PYROPHOSPHORYL-2-ALPHA,3-ALPHA-DIHYDROXY-4-BETA-CYCLOPENTANE-METHANOL-5-PHOSPHATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1A96 
_cell.length_a            94.2 
_cell.length_b            94.2 
_cell.length_c            165.9 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1A96 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 G O3 PCP . B PCP 301 1_555 F MG MG . B MG 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc2 G O1 PCP . B PCP 301 1_555 F MG MG . B MG 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc3 G O2 PCP . B PCP 301 1_555 F MG MG . B MG 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? 
metalc ? metalc4 G O2B PCP . B PCP 301 1_555 F MG MG . B MG 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc5 F MG MG . B MG 308 1_555 N O HOH . B HOH 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? 
metalc ? metalc6 F MG MG . B MG 308 1_555 N O HOH . B HOH 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc7 J O2B PCP . C PCP 302 1_555 I MG MG . C MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? 
metalc ? metalc8 J O1 PCP . C PCP 302 1_555 I MG MG . C MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc9 J O3 PCP . C PCP 302 1_555 I MG MG . C MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc10 J O2 PCP . C PCP 302 1_555 I MG MG . C MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? 
metalc ? metalc11 I MG MG . C MG 307 1_555 O O HOH . C HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? 
metalc ? metalc12 I MG MG . C MG 307 1_555 O O HOH . C HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
#
_chem_comp.formula           'C6 H15 O13 P3' 
_chem_comp.formula_weight    388.097 
_chem_comp.id                PCP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-ALPHA-PYROPHOSPHORYL-2-ALPHA,3-ALPHA-DIHYDROXY-4-BETA-CYCLOPENTANE-METHANOL-5-PHOSPHATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'CARBOXYLIC PRPP;CPRPP' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PCP sing 243 n n 
C1 C5 PCP sing 244 n n 
C1 O1 PCP sing 245 n n 
C1 H1 PCP sing 246 n n 
C2 C3 PCP sing 247 n n 
C2 O2 PCP sing 248 n n 
C2 H2 PCP sing 249 n n 
C3 C4 PCP sing 250 n n 
C3 O3 PCP sing 251 n n 
C3 H3 PCP sing 252 n n 
C4 C5 PCP sing 253 n n 
C4 CP PCP sing 254 n n 
C4 H4 PCP sing 255 n n 
C5 H51 PCP sing 256 n n 
C5 H52 PCP sing 257 n n 
CP OP PCP sing 258 n n 
CP HP1 PCP sing 259 n n 
CP HP2 PCP sing 260 n n 
O1 PA PCP sing 261 n n 
O2 HO2 PCP sing 262 n n 
O3 HO3 PCP sing 263 n n 
OP P PCP sing 264 n n 
P O1P PCP doub 265 n n 
P O2P PCP sing 266 n n 
P O3P PCP sing 267 n n 
O2P HOP2 PCP sing 268 n n 
O3P HOP3 PCP sing 269 n n 
PA O1A PCP doub 270 n n 
PA O2A PCP sing 271 n n 
PA O3A PCP sing 272 n n 
O2A HOA2 PCP sing 273 n n 
O3A PB PCP sing 274 n n 
PB O1B PCP doub 275 n n 
PB O2B PCP sing 276 n n 
PB O3B PCP sing 277 n n 
O2B HOB2 PCP sing 278 n n 
O3B HOB3 PCP sing 279 n n 
#
_atom_sites.entry_id                     1A96 
_atom_sites.fract_transf_matrix[1][1]    0.010616 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010616 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006028 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 BO3 A 1 306 306 BO3 BO3 . 
F 3 MG B 1 308 308 MG MO2 . 
G 4 PCP B 1 301 301 PCP PCP . 
H 5 XAN B 1 304 304 XAN XAN . 
I 3 MG C 1 307 307 MG MO2 . 
J 4 PCP C 1 302 302 PCP PCP . 
K 5 XAN C 1 303 303 XAN XAN . 
L 2 BO3 D 1 305 305 BO3 BO3 . 
M 6 HOH A 1 401 401 HOH HOH . 
M 6 HOH A 2 403 403 HOH HOH . 
M 6 HOH A 3 411 411 HOH HOH . 
M 6 HOH A 4 413 413 HOH HOH . 
M 6 HOH A 5 419 419 HOH HOH . 
M 6 HOH A 6 422 422 HOH HOH . 
M 6 HOH A 7 430 430 HOH HOH . 
M 6 HOH A 8 436 436 HOH HOH . 
M 6 HOH A 9 440 440 HOH HOH . 
M 6 HOH A 10 441 441 HOH HOH . 
M 6 HOH A 11 445 445 HOH HOH . 
M 6 HOH A 12 447 447 HOH HOH . 
M 6 HOH A 13 448 448 HOH HOH . 
M 6 HOH A 14 449 449 HOH HOH . 
M 6 HOH A 15 457 457 HOH HOH . 
M 6 HOH A 16 463 463 HOH HOH . 
M 6 HOH A 17 464 464 HOH HOH . 
M 6 HOH A 18 473 473 HOH HOH . 
M 6 HOH A 19 474 474 HOH HOH . 
M 6 HOH A 20 476 476 HOH HOH . 
M 6 HOH A 21 488 488 HOH HOH . 
M 6 HOH A 22 490 490 HOH HOH . 
M 6 HOH A 23 493 493 HOH HOH . 
M 6 HOH A 24 494 494 HOH HOH . 
M 6 HOH A 25 497 497 HOH HOH . 
M 6 HOH A 26 499 499 HOH HOH . 
M 6 HOH A 27 507 507 HOH HOH . 
M 6 HOH A 28 515 515 HOH HOH . 
M 6 HOH A 29 516 516 HOH HOH . 
M 6 HOH A 30 518 518 HOH HOH . 
M 6 HOH A 31 519 519 HOH HOH . 
M 6 HOH A 32 529 529 HOH HOH . 
M 6 HOH A 33 530 530 HOH HOH . 
M 6 HOH A 34 536 536 HOH HOH . 
M 6 HOH A 35 537 537 HOH HOH . 
N 6 HOH B 1 404 404 HOH HOH . 
N 6 HOH B 2 405 405 HOH HOH . 
N 6 HOH B 3 407 407 HOH HOH . 
N 6 HOH B 4 409 409 HOH HOH . 
N 6 HOH B 5 412 412 HOH HOH . 
N 6 HOH B 6 418 418 HOH HOH . 
N 6 HOH B 7 424 424 HOH HOH . 
N 6 HOH B 8 426 426 HOH HOH . 
N 6 HOH B 9 435 435 HOH HOH . 
N 6 HOH B 10 439 439 HOH HOH . 
N 6 HOH B 11 442 442 HOH HOH . 
N 6 HOH B 12 443 443 HOH HOH . 
N 6 HOH B 13 452 452 HOH HOH . 
N 6 HOH B 14 454 454 HOH HOH . 
N 6 HOH B 15 459 459 HOH HOH . 
N 6 HOH B 16 460 460 HOH HOH . 
N 6 HOH B 17 462 462 HOH HOH . 
N 6 HOH B 18 466 466 HOH HOH . 
N 6 HOH B 19 468 468 HOH HOH . 
N 6 HOH B 20 479 479 HOH HOH . 
N 6 HOH B 21 481 481 HOH HOH . 
N 6 HOH B 22 498 498 HOH HOH . 
N 6 HOH B 23 500 500 HOH HOH . 
N 6 HOH B 24 502 502 HOH HOH . 
N 6 HOH B 25 505 505 HOH HOH . 
N 6 HOH B 26 506 506 HOH HOH . 
N 6 HOH B 27 509 509 HOH HOH . 
N 6 HOH B 28 510 510 HOH HOH . 
N 6 HOH B 29 511 511 HOH HOH . 
N 6 HOH B 30 517 517 HOH HOH . 
N 6 HOH B 31 521 521 HOH HOH . 
N 6 HOH B 32 523 523 HOH HOH . 
N 6 HOH B 33 524 524 HOH HOH . 
N 6 HOH B 34 525 525 HOH HOH . 
N 6 HOH B 35 526 526 HOH HOH . 
N 6 HOH B 36 531 531 HOH HOH . 
N 6 HOH B 37 541 308 HOH MO2 . 
N 6 HOH B 38 542 308 HOH MO2 . 
O 6 HOH C 1 402 402 HOH HOH . 
O 6 HOH C 2 406 406 HOH HOH . 
O 6 HOH C 3 408 408 HOH HOH . 
O 6 HOH C 4 410 410 HOH HOH . 
O 6 HOH C 5 415 415 HOH HOH . 
O 6 HOH C 6 417 417 HOH HOH . 
O 6 HOH C 7 423 423 HOH HOH . 
O 6 HOH C 8 425 425 HOH HOH . 
O 6 HOH C 9 427 427 HOH HOH . 
O 6 HOH C 10 429 429 HOH HOH . 
O 6 HOH C 11 432 432 HOH HOH . 
O 6 HOH C 12 434 434 HOH HOH . 
O 6 HOH C 13 437 437 HOH HOH . 
O 6 HOH C 14 444 444 HOH HOH . 
O 6 HOH C 15 450 450 HOH HOH . 
O 6 HOH C 16 451 451 HOH HOH . 
O 6 HOH C 17 458 458 HOH HOH . 
O 6 HOH C 18 467 467 HOH HOH . 
O 6 HOH C 19 470 470 HOH HOH . 
O 6 HOH C 20 472 472 HOH HOH . 
O 6 HOH C 21 478 478 HOH HOH . 
O 6 HOH C 22 480 480 HOH HOH . 
O 6 HOH C 23 482 482 HOH HOH . 
O 6 HOH C 24 485 485 HOH HOH . 
O 6 HOH C 25 486 486 HOH HOH . 
O 6 HOH C 26 495 495 HOH HOH . 
O 6 HOH C 27 503 503 HOH HOH . 
O 6 HOH C 28 504 504 HOH HOH . 
O 6 HOH C 29 513 513 HOH HOH . 
O 6 HOH C 30 514 514 HOH HOH . 
O 6 HOH C 31 520 520 HOH HOH . 
O 6 HOH C 32 522 522 HOH HOH . 
O 6 HOH C 33 527 527 HOH HOH . 
O 6 HOH C 34 532 532 HOH HOH . 
O 6 HOH C 35 539 307 HOH MO2 . 
O 6 HOH C 36 540 307 HOH MO2 . 
P 6 HOH D 1 414 414 HOH HOH . 
P 6 HOH D 2 416 416 HOH HOH . 
P 6 HOH D 3 420 420 HOH HOH . 
P 6 HOH D 4 421 421 HOH HOH . 
P 6 HOH D 5 428 428 HOH HOH . 
P 6 HOH D 6 431 431 HOH HOH . 
P 6 HOH D 7 433 433 HOH HOH . 
P 6 HOH D 8 438 438 HOH HOH . 
P 6 HOH D 9 446 446 HOH HOH . 
P 6 HOH D 10 453 453 HOH HOH . 
P 6 HOH D 11 455 455 HOH HOH . 
P 6 HOH D 12 456 456 HOH HOH . 
P 6 HOH D 13 461 461 HOH HOH . 
P 6 HOH D 14 465 465 HOH HOH . 
P 6 HOH D 15 469 469 HOH HOH . 
P 6 HOH D 16 471 471 HOH HOH . 
P 6 HOH D 17 475 475 HOH HOH . 
P 6 HOH D 18 477 477 HOH HOH . 
P 6 HOH D 19 483 483 HOH HOH . 
P 6 HOH D 20 484 484 HOH HOH . 
P 6 HOH D 21 487 487 HOH HOH . 
P 6 HOH D 22 489 489 HOH HOH . 
P 6 HOH D 23 491 491 HOH HOH . 
P 6 HOH D 24 492 492 HOH HOH . 
P 6 HOH D 25 496 496 HOH HOH . 
P 6 HOH D 26 501 501 HOH HOH . 
P 6 HOH D 27 508 508 HOH HOH . 
P 6 HOH D 28 512 512 HOH HOH . 
P 6 HOH D 29 528 528 HOH HOH . 
P 6 HOH D 30 533 533 HOH HOH . 
P 6 HOH D 31 534 534 HOH HOH . 
P 6 HOH D 32 535 535 HOH HOH . 
P 6 HOH D 33 538 538 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PCP . . . J 4 40.241 115.467 55.975 1 77.26 ? C1 PCP 302 C 1 
HETATM 2 C C2 PCP . . . J 4 39.299 114.341 55.529 1 75.1 ? C2 PCP 302 C 1 
HETATM 3 C C3 PCP . . . J 4 39.499 113.219 56.591 1 72.58 ? C3 PCP 302 C 1 
HETATM 4 C C4 PCP . . . J 4 40.969 113.347 57.014 1 69.38 ? C4 PCP 302 C 1 
HETATM 5 C C5 PCP . . . J 4 41.203 114.813 56.886 1 73.92 ? C5 PCP 302 C 1 
HETATM 6 C CP PCP . . . J 4 41.969 112.486 56.255 1 60.71 ? CP PCP 302 C 1 
HETATM 7 O O1 PCP . . . J 4 39.548 116.412 56.917 1 83.72 ? O1 PCP 302 C 1 
HETATM 8 O O2 PCP . . . J 4 37.95 114.765 55.418 1 74.89 ? O2 PCP 302 C 1 
HETATM 9 O O3 PCP . . . J 4 38.682 113.32 57.75 1 72.87 ? O3 PCP 302 C 1 
HETATM 10 O OP PCP . . . J 4 43.338 112.793 56.614 1 49.11 ? OP PCP 302 C 1 
HETATM 11 P P PCP . . . J 4 44.407 111.658 56.984 1 40.5 ? P PCP 302 C 1 
HETATM 12 O O1P PCP . . . J 4 43.909 110.399 56.385 1 36.97 ? O1P PCP 302 C 1 
HETATM 13 O O2P PCP . . . J 4 44.443 111.615 58.463 1 39.08 ? O2P PCP 302 C 1 
HETATM 14 O O3P PCP . . . J 4 45.685 112.109 56.382 1 41.65 ? O3P PCP 302 C 1 
HETATM 15 P PA PCP . . . J 4 40.269 117.7 57.435 1 88.07 ? PA PCP 302 C 1 
HETATM 16 O O1A PCP . . . J 4 41.395 117.965 56.482 1 88.11 ? O1A PCP 302 C 1 
HETATM 17 O O2A PCP . . . J 4 40.785 117.362 58.799 1 87.15 ? O2A PCP 302 C 1 
HETATM 18 O O3A PCP . . . J 4 39.159 118.735 57.403 1 86.4 ? O3A PCP 302 C 1 
HETATM 19 P PB PCP . . . J 4 37.682 118.714 57.744 1 82.94 ? PB PCP 302 C 1 
HETATM 20 O O1B PCP . . . J 4 37.429 118.99 59.19 1 81.18 ? O1B PCP 302 C 1 
HETATM 21 O O2B PCP . . . J 4 37.1 117.424 57.447 1 83.16 ? O2B PCP 302 C 1 
HETATM 22 O O3B PCP . . . J 4 36.928 119.72 56.939 1 84.13 ? O3B PCP 302 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    40 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           22 
#