data_1A9M # _model_server_result.job_id 55J98LNW_PcuZSWwLMcCYQ _model_server_result.datetime_utc '2025-03-02 23:34:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a9m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":100}' # _entry.id 1A9M # _exptl.entry_id 1A9M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 596.762 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[[1-[N-ACETAMIDYL]-[1-CYCLOHEXYLMETHYL-2-HYDROXY-4-ISOPROPYL]-BUT-4-YL]-CARBONYL]-GLUTAMINYL-ARGINYL-AMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1A9M _cell.length_a 58.5 _cell.length_b 88.2 _cell.length_c 94.2 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A9M _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H52 N8 O6' _chem_comp.formula_weight 596.762 _chem_comp.id U0E _chem_comp.mon_nstd_flag . _chem_comp.name N-[[1-[N-ACETAMIDYL]-[1-CYCLOHEXYLMETHYL-2-HYDROXY-4-ISOPROPYL]-BUT-4-YL]-CARBONYL]-GLUTAMINYL-ARGINYL-AMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 U0E sing 358 n n C1 H11A U0E sing 359 n n C1 H12 U0E sing 360 n n C1 H13A U0E sing 361 n n C2 N1 U0E sing 362 n n C2 O1 U0E doub 363 n n C3 C4 U0E sing 364 n n C3 C11 U0E sing 365 n n C3 N1 U0E sing 366 n n C3 H3 U0E sing 367 n n C4 C5 U0E sing 368 n n C4 H41 U0E sing 369 n n C4 H42 U0E sing 370 n n C5 C6 U0E sing 371 n n C5 C10 U0E sing 372 n n C5 H5 U0E sing 373 n n C6 C7 U0E sing 374 n n C6 H61 U0E sing 375 n n C6 H62 U0E sing 376 n n C7 C8 U0E sing 377 n n C7 H71 U0E sing 378 n n C7 H72 U0E sing 379 n n C8 C9 U0E sing 380 n n C8 H81 U0E sing 381 n n C8 H82 U0E sing 382 n n C9 C10 U0E sing 383 n n C9 H91 U0E sing 384 n n C9 H92 U0E sing 385 n n C10 H101 U0E sing 386 n n C10 H102 U0E sing 387 n n C11 C12 U0E sing 388 n n C11 O2 U0E sing 389 n n C11 H11 U0E sing 390 n n C12 C13 U0E sing 391 n n C12 H121 U0E sing 392 n n C12 H122 U0E sing 393 n n C13 C14 U0E sing 394 n n C13 C17 U0E sing 395 n n C13 H13 U0E sing 396 n n C14 C15 U0E sing 397 n n C14 C16 U0E sing 398 n n C14 H14 U0E sing 399 n n C15 H151 U0E sing 400 n n C15 H152 U0E sing 401 n n C15 H153 U0E sing 402 n n C16 H161 U0E sing 403 n n C16 H162 U0E sing 404 n n C16 H163 U0E sing 405 n n C17 N2 U0E sing 406 n n C17 O3 U0E doub 407 n n C18 C19 U0E sing 408 n n C18 C22 U0E sing 409 n n C18 N2 U0E sing 410 n n C18 H18 U0E sing 411 n n C19 C20 U0E sing 412 n n C19 H191 U0E sing 413 n n C19 H192 U0E sing 414 n n C20 C21 U0E sing 415 n n C20 H201 U0E sing 416 n n C20 H202 U0E sing 417 n n C21 N3 U0E sing 418 n n C21 O4 U0E doub 419 n n C22 N4 U0E sing 420 n n C22 O5 U0E doub 421 n n C23 C24 U0E sing 422 n n C23 C25 U0E sing 423 n n C23 N4 U0E sing 424 n n C23 H23 U0E sing 425 n n C24 N5 U0E sing 426 n n C24 O6 U0E doub 427 n n C25 C26 U0E sing 428 n n C25 H251 U0E sing 429 n n C25 H252 U0E sing 430 n n C26 C27 U0E sing 431 n n C26 H261 U0E sing 432 n n C26 H262 U0E sing 433 n n C27 N6 U0E sing 434 n n C27 H271 U0E sing 435 n n C27 H272 U0E sing 436 n n C28 N6 U0E sing 437 n n C28 N7 U0E doub 438 n n C28 N8 U0E sing 439 n n N1 HN1 U0E sing 440 n n N2 HN2 U0E sing 441 n n N3 HN31 U0E sing 442 n n N3 HN32 U0E sing 443 n n N4 HN4 U0E sing 444 n n N5 HN51 U0E sing 445 n n N5 HN52 U0E sing 446 n n N6 HN6 U0E sing 447 n n N7 HN7 U0E sing 448 n n N8 HN81 U0E sing 449 n n N8 HN82 U0E sing 450 n n O2 HO2 U0E sing 451 n n # _atom_sites.entry_id 1A9M _atom_sites.fract_transf_matrix[1][1] 0.017094 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011338 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 U0E B 1 100 1 U0E U0E . D 3 HOH A 1 100 3 HOH HOH . D 3 HOH A 2 101 4 HOH HOH . D 3 HOH A 3 102 7 HOH HOH . D 3 HOH A 4 103 8 HOH HOH . D 3 HOH A 5 104 9 HOH HOH . D 3 HOH A 6 105 11 HOH HOH . D 3 HOH A 7 106 12 HOH HOH . D 3 HOH A 8 107 13 HOH HOH . D 3 HOH A 9 108 14 HOH HOH . D 3 HOH A 10 109 19 HOH HOH . D 3 HOH A 11 110 22 HOH HOH . D 3 HOH A 12 111 23 HOH HOH . D 3 HOH A 13 112 25 HOH HOH . D 3 HOH A 14 113 31 HOH HOH . D 3 HOH A 15 114 33 HOH HOH . D 3 HOH A 16 115 34 HOH HOH . D 3 HOH A 17 116 38 HOH HOH . D 3 HOH A 18 117 43 HOH HOH . D 3 HOH A 19 118 44 HOH HOH . D 3 HOH A 20 119 52 HOH HOH . D 3 HOH A 21 120 53 HOH HOH . D 3 HOH A 22 121 55 HOH HOH . D 3 HOH A 23 122 56 HOH HOH . D 3 HOH A 24 123 57 HOH HOH . D 3 HOH A 25 124 58 HOH HOH . D 3 HOH A 26 125 59 HOH HOH . E 3 HOH B 1 101 1 HOH HOH . E 3 HOH B 2 102 2 HOH HOH . E 3 HOH B 3 103 5 HOH HOH . E 3 HOH B 4 104 6 HOH HOH . E 3 HOH B 5 105 10 HOH HOH . E 3 HOH B 6 106 15 HOH HOH . E 3 HOH B 7 107 16 HOH HOH . E 3 HOH B 8 108 17 HOH HOH . E 3 HOH B 9 109 18 HOH HOH . E 3 HOH B 10 110 20 HOH HOH . E 3 HOH B 11 111 21 HOH HOH . E 3 HOH B 12 112 24 HOH HOH . E 3 HOH B 13 113 26 HOH HOH . E 3 HOH B 14 114 27 HOH HOH . E 3 HOH B 15 115 28 HOH HOH . E 3 HOH B 16 116 29 HOH HOH . E 3 HOH B 17 117 30 HOH HOH . E 3 HOH B 18 118 32 HOH HOH . E 3 HOH B 19 119 35 HOH HOH . E 3 HOH B 20 120 36 HOH HOH . E 3 HOH B 21 121 37 HOH HOH . E 3 HOH B 22 122 39 HOH HOH . E 3 HOH B 23 123 40 HOH HOH . E 3 HOH B 24 124 41 HOH HOH . E 3 HOH B 25 125 42 HOH HOH . E 3 HOH B 26 126 45 HOH HOH . E 3 HOH B 27 127 46 HOH HOH . E 3 HOH B 28 128 47 HOH HOH . E 3 HOH B 29 129 48 HOH HOH . E 3 HOH B 30 130 49 HOH HOH . E 3 HOH B 31 131 50 HOH HOH . E 3 HOH B 32 132 51 HOH HOH . E 3 HOH B 33 133 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U0E . . . C 2 45.51 23.002 66.258 1 37.04 ? C1 U0E 100 B 1 HETATM 2 C C2 U0E . . . C 2 44.71 22.276 65.633 1 41.31 ? C2 U0E 100 B 1 HETATM 3 C C3 U0E . . . C 2 44.359 19.976 64.747 1 21.79 ? C3 U0E 100 B 1 HETATM 4 C C4 U0E . . . C 2 45.332 19.284 63.824 1 18.72 ? C4 U0E 100 B 1 HETATM 5 C C5 U0E . . . C 2 45.959 19.985 62.647 1 24.15 ? C5 U0E 100 B 1 HETATM 6 C C6 U0E . . . C 2 45.163 21.19 62.183 1 31.54 ? C6 U0E 100 B 1 HETATM 7 C C7 U0E . . . C 2 45.732 21.766 60.907 1 28.61 ? C7 U0E 100 B 1 HETATM 8 C C8 U0E . . . C 2 47.214 22.115 61.083 1 35.65 ? C8 U0E 100 B 1 HETATM 9 C C9 U0E . . . C 2 48.057 20.985 61.711 1 24.8 ? C9 U0E 100 B 1 HETATM 10 C C10 U0E . . . C 2 47.385 20.404 62.928 1 29.31 ? C10 U0E 100 B 1 HETATM 11 C C11 U0E . . . C 2 43.638 18.884 65.608 1 18.43 ? C11 U0E 100 B 1 HETATM 12 C C12 U0E . . . C 2 42.796 19.505 66.706 1 28.19 ? C12 U0E 100 B 1 HETATM 13 C C13 U0E . . . C 2 41.46 18.801 66.866 1 26.3 ? C13 U0E 100 B 1 HETATM 14 C C14 U0E . . . C 2 40.536 19.613 67.836 1 25.3 ? C14 U0E 100 B 1 HETATM 15 C C15 U0E . . . C 2 39.994 20.878 67.199 1 23.41 ? C15 U0E 100 B 1 HETATM 16 C C16 U0E . . . C 2 39.425 18.755 68.389 1 22.89 ? C16 U0E 100 B 1 HETATM 17 C C17 U0E . . . C 2 40.839 18.58 65.48 1 38.56 ? C17 U0E 100 B 1 HETATM 18 C C18 U0E . . . C 2 39.38 17.115 64.265 1 39.04 ? C18 U0E 100 B 1 HETATM 19 C C19 U0E . . . C 2 39.962 16.789 62.868 1 36.66 ? C19 U0E 100 B 1 HETATM 20 C C20 U0E . . . C 2 40.038 15.326 62.481 1 33.06 ? C20 U0E 100 B 1 HETATM 21 C C21 U0E . . . C 2 38.729 14.796 61.971 1 41.77 ? C21 U0E 100 B 1 HETATM 22 C C22 U0E . . . C 2 38.397 16.071 64.757 1 37.74 ? C22 U0E 100 B 1 HETATM 23 C C23 U0E . . . C 2 36.078 15.388 64.762 1 39.51 ? C23 U0E 100 B 1 HETATM 24 C C24 U0E . . . C 2 35.167 15.245 63.567 1 41.19 ? C24 U0E 100 B 1 HETATM 25 C C25 U0E . . . C 2 35.338 16.059 65.914 1 39.78 ? C25 U0E 100 B 1 HETATM 26 C C26 U0E . . . C 2 35.992 15.858 67.259 1 51.82 ? C26 U0E 100 B 1 HETATM 27 C C27 U0E . . . C 2 35.95 17.128 68.077 1 57.38 ? C27 U0E 100 B 1 HETATM 28 C C28 U0E . . . C 2 34.303 17.214 69.912 1 69.53 ? C28 U0E 100 B 1 HETATM 29 N N1 U0E . . . C 2 45.062 20.979 65.566 1 34.43 ? N1 U0E 100 B 1 HETATM 30 N N2 U0E . . . C 2 40.435 17.341 65.234 1 40.71 ? N2 U0E 100 B 1 HETATM 31 N N3 U0E . . . C 2 38.156 15.473 60.994 1 48.57 ? N3 U0E 100 B 1 HETATM 32 N N4 U0E . . . C 2 37.164 16.221 64.306 1 38.82 ? N4 U0E 100 B 1 HETATM 33 N N5 U0E . . . C 2 34.606 14.051 63.501 1 50.9 ? N5 U0E 100 B 1 HETATM 34 N N6 U0E . . . C 2 35.503 16.876 69.442 1 64.33 ? N6 U0E 100 B 1 HETATM 35 N N7 U0E . . . C 2 33.553 18.105 69.262 1 69.98 ? N7 U0E 100 B 1 HETATM 36 N N8 U0E . . . C 2 33.854 16.666 71.036 1 70.07 ? N8 U0E 100 B 1 HETATM 37 O O1 U0E . . . C 2 43.67 22.745 65.125 1 39.62 ? O1 U0E 100 B 1 HETATM 38 O O2 U0E . . . C 2 44.585 18.008 66.196 1 19.55 ? O2 U0E 100 B 1 HETATM 39 O O3 U0E . . . C 2 40.761 19.494 64.631 1 32.83 ? O3 U0E 100 B 1 HETATM 40 O O4 U0E . . . C 2 38.218 13.806 62.473 1 44.84 ? O4 U0E 100 B 1 HETATM 41 O O5 U0E . . . C 2 38.732 15.197 65.557 1 32.02 ? O5 U0E 100 B 1 HETATM 42 O O6 U0E . . . C 2 34.993 16.138 62.726 1 31.97 ? O6 U0E 100 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 42 #