data_1A9P # _model_server_result.job_id '_XCeN5O99KX62PEH6M5_gg' _model_server_result.datetime_utc '2024-11-29 02:01:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a9p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":290}' # _entry.id 1A9P # _exptl.entry_id 1A9P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.238 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-DEAZAINOSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1A9P _cell.length_a 94.2 _cell.length_b 94.2 _cell.length_c 94.2 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A9P _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_656 -z+1,x+1/2,-y+3/2 0 0 -1 1 0 0 0 -1 0 94.2 47.1 141.3 3 'crystal symmetry operation' 11_466 y-1/2,-z+3/2,-x+1 0 1 0 0 0 -1 -1 0 0 -47.1 141.3 94.2 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H13 N3 O5' _chem_comp.formula_weight 267.238 _chem_comp.id 9DI _chem_comp.mon_nstd_flag . _chem_comp.name 9-DEAZAINOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C4 9DI sing 1 n y C9 C8 9DI doub 2 n y C9 C1' 9DI sing 3 n n C4 N3 9DI sing 4 n n C4 C5 9DI doub 5 n y N3 C2 9DI doub 6 n n C2 N1 9DI sing 7 n n C2 H2 9DI sing 8 n n N1 C6 9DI sing 9 n n N1 HN1 9DI sing 10 n n C6 O6 9DI doub 11 n n C6 C5 9DI sing 12 n n C5 N7 9DI sing 13 n y N7 C8 9DI sing 14 n y N7 HN7 9DI sing 15 n n C8 H8 9DI sing 16 n n C5' O5' 9DI sing 17 n n C5' C4' 9DI sing 18 n n C5' "H5'1" 9DI sing 19 n n C5' "H5'2" 9DI sing 20 n n O5' HO5' 9DI sing 21 n n C4' O4' 9DI sing 22 n n C4' C3' 9DI sing 23 n n C4' H4' 9DI sing 24 n n O4' C1' 9DI sing 25 n n C1' C2' 9DI sing 26 n n C1' H1' 9DI sing 27 n n C2' O2' 9DI sing 28 n n C2' C3' 9DI sing 29 n n C2' H2' 9DI sing 30 n n O2' HO2' 9DI sing 31 n n C3' O3' 9DI sing 32 n n C3' H3' 9DI sing 33 n n O3' HO3' 9DI sing 34 n n # _atom_sites.entry_id 1A9P _atom_sites.fract_transf_matrix[1][1] 0.010616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010616 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 291 291 PO4 PO4 . C 3 9DI A 1 290 290 9DI 9DI . D 4 HOH A 1 292 292 HOH HOH . D 4 HOH A 2 293 293 HOH HOH . D 4 HOH A 3 294 294 HOH HOH . D 4 HOH A 4 295 295 HOH HOH . D 4 HOH A 5 296 296 HOH HOH . D 4 HOH A 6 297 297 HOH HOH . D 4 HOH A 7 298 298 HOH HOH . D 4 HOH A 8 299 299 HOH HOH . D 4 HOH A 9 300 300 HOH HOH . D 4 HOH A 10 301 301 HOH HOH . D 4 HOH A 11 302 302 HOH HOH . D 4 HOH A 12 303 303 HOH HOH . D 4 HOH A 13 304 304 HOH HOH . D 4 HOH A 14 305 305 HOH HOH . D 4 HOH A 15 306 306 HOH HOH . D 4 HOH A 16 307 307 HOH HOH . D 4 HOH A 17 308 308 HOH HOH . D 4 HOH A 18 309 309 HOH HOH . D 4 HOH A 19 310 310 HOH HOH . D 4 HOH A 20 311 311 HOH HOH . D 4 HOH A 21 312 312 HOH HOH . D 4 HOH A 22 313 313 HOH HOH . D 4 HOH A 23 314 314 HOH HOH . D 4 HOH A 24 315 315 HOH HOH . D 4 HOH A 25 316 316 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 9DI . . . C 3 22.061 90.987 74.184 1 2 ? C9 9DI 290 A 1 HETATM 2 C C4 9DI . . . C 3 23.239 90.35 73.821 1 2.24 ? C4 9DI 290 A 1 HETATM 3 N N3 9DI . . . C 3 23.495 89.029 73.589 1 2 ? N3 9DI 290 A 1 HETATM 4 C C2 9DI . . . C 3 24.787 88.807 73.252 1 2 ? C2 9DI 290 A 1 HETATM 5 N N1 9DI . . . C 3 25.742 89.786 73.154 1 2 ? N1 9DI 290 A 1 HETATM 6 C C6 9DI . . . C 3 25.511 91.131 73.393 1 2.31 ? C6 9DI 290 A 1 HETATM 7 O O6 9DI . . . C 3 26.436 91.935 73.301 1 3.74 ? O6 9DI 290 A 1 HETATM 8 C C5 9DI . . . C 3 24.144 91.405 73.745 1 2 ? C5 9DI 290 A 1 HETATM 9 N N7 9DI . . . C 3 23.538 92.608 74.041 1 2 ? N7 9DI 290 A 1 HETATM 10 C C8 9DI . . . C 3 22.225 92.343 74.313 1 2 ? C8 9DI 290 A 1 HETATM 11 C C5' 9DI . . . C 3 21.287 90.192 77.71 1 8.47 ? C5' 9DI 290 A 1 HETATM 12 O O5' 9DI . . . C 3 21.342 91.608 77.999 1 8.42 ? O5' 9DI 290 A 1 HETATM 13 C C4' 9DI . . . C 3 20.12 89.918 76.786 1 5.35 ? C4' 9DI 290 A 1 HETATM 14 O O4' 9DI . . . C 3 20.277 90.881 75.713 1 3.72 ? O4' 9DI 290 A 1 HETATM 15 C C1' 9DI . . . C 3 20.704 90.315 74.488 1 2 ? C1' 9DI 290 A 1 HETATM 16 C C2' 9DI . . . C 3 20.734 88.789 74.746 1 3.33 ? C2' 9DI 290 A 1 HETATM 17 O O2' 9DI . . . C 3 20.102 88.041 73.688 1 2 ? O2' 9DI 290 A 1 HETATM 18 C C3' 9DI . . . C 3 20.129 88.528 76.156 1 4.82 ? C3' 9DI 290 A 1 HETATM 19 O O3' 9DI . . . C 3 18.798 87.956 76.17 1 6.73 ? O3' 9DI 290 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 497 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 19 #