data_1A9T
#
_model_server_result.job_id            k8blHGAPmMEKqpq5UeovEQ 
_model_server_result.datetime_utc      '2024-11-24 04:15:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1a9t 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":291}' 
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_entry.id    1A9T 
#
_exptl.entry_id    1A9T 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              230.11 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            1-O-phosphono-alpha-D-ribofuranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1A9T 
_cell.length_a            94.2 
_cell.length_b            94.2 
_cell.length_c            94.2 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 1A9T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 3' 
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_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
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loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_656 -z+1,x+1/2,-y+3/2 0 0 -1 1 0 0 0 -1 0 94.2 47.1 141.3 
3 'crystal symmetry operation' 11_466 y-1/2,-z+3/2,-x+1 0 1 0 0 0 -1 -1 0 0 -47.1 141.3 94.2 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C5 H11 O8 P' 
_chem_comp.formula_weight    230.11 
_chem_comp.id                R1P 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              1-O-phosphono-alpha-D-ribofuranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     RIBOSE-1-PHOSPHATE;1-O-phosphono-alpha-D-ribose;1-O-phosphono-D-ribose;1-O-phosphono-ribose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 O5 R1P sing 292 n n 
C5 C4 R1P sing 293 n n 
C5 H51 R1P sing 294 n n 
C5 H52 R1P sing 295 n n 
O5 HO5 R1P sing 296 n n 
C4 O4 R1P sing 297 n n 
C4 C3 R1P sing 298 n n 
C4 H4 R1P sing 299 n n 
O4 C1 R1P sing 300 n n 
C1 C2 R1P sing 301 n n 
C1 O1 R1P sing 302 n n 
C1 H1 R1P sing 303 n n 
C2 O2 R1P sing 304 n n 
C2 C3 R1P sing 305 n n 
C2 H2 R1P sing 306 n n 
O2 HO2 R1P sing 307 n n 
C3 O3 R1P sing 308 n n 
C3 H3 R1P sing 309 n n 
O3 HO3 R1P sing 310 n n 
O1 P R1P sing 311 n n 
P O1P R1P doub 312 n n 
P O2P R1P sing 313 n n 
P O3P R1P sing 314 n n 
O2P HOP2 R1P sing 315 n n 
O3P HOP3 R1P sing 316 n n 
#
_pdbx_chem_comp_identifier.comp_id            R1P 
_pdbx_chem_comp_identifier.identifier         a-D-Ribf1PO3 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
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_atom_sites.entry_id                     1A9T 
_atom_sites.fract_transf_matrix[1][1]    0.010616 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010616 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010616 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 R1P A 1 291 291 R1P R1P . 
C 3 HPA A 1 290 290 HPA HPA . 
D 4 HOH A 1 3301 3301 HOH HOH . 
D 4 HOH A 2 3302 3302 HOH HOH . 
D 4 HOH A 3 3303 3303 HOH HOH . 
D 4 HOH A 4 3304 3304 HOH HOH . 
D 4 HOH A 5 3305 3305 HOH HOH . 
D 4 HOH A 6 3306 3306 HOH HOH . 
D 4 HOH A 7 3307 3307 HOH HOH . 
D 4 HOH A 8 3308 3308 HOH HOH . 
D 4 HOH A 9 3309 3309 HOH HOH . 
D 4 HOH A 10 3310 3310 HOH HOH . 
D 4 HOH A 11 3311 3311 HOH HOH . 
D 4 HOH A 12 3312 3312 HOH HOH . 
D 4 HOH A 13 3313 3313 HOH HOH . 
D 4 HOH A 14 3315 3315 HOH HOH . 
D 4 HOH A 15 3316 3316 HOH HOH . 
D 4 HOH A 16 3317 3317 HOH HOH . 
D 4 HOH A 17 3318 3318 HOH HOH . 
D 4 HOH A 18 3319 3319 HOH HOH . 
D 4 HOH A 19 3320 3320 HOH HOH . 
D 4 HOH A 20 3321 3321 HOH HOH . 
D 4 HOH A 21 3322 3322 HOH HOH . 
D 4 HOH A 22 3323 3323 HOH HOH . 
D 4 HOH A 23 3324 3324 HOH HOH . 
D 4 HOH A 24 3325 3325 HOH HOH . 
D 4 HOH A 25 3326 3326 HOH HOH . 
D 4 HOH A 26 3401 3401 HOH HOH . 
D 4 HOH A 27 3402 3402 HOH HOH . 
D 4 HOH A 28 3403 3403 HOH HOH . 
D 4 HOH A 29 3404 3404 HOH HOH . 
D 4 HOH A 30 3405 3405 HOH HOH . 
D 4 HOH A 31 3406 3406 HOH HOH . 
D 4 HOH A 32 3407 3407 HOH HOH . 
D 4 HOH A 33 3408 3408 HOH HOH . 
D 4 HOH A 34 3409 3409 HOH HOH . 
D 4 HOH A 35 3410 3410 HOH HOH . 
D 4 HOH A 36 3411 3411 HOH HOH . 
D 4 HOH A 37 3412 3412 HOH HOH . 
D 4 HOH A 38 3413 3413 HOH HOH . 
D 4 HOH A 39 3414 3414 HOH HOH . 
D 4 HOH A 40 3415 3415 HOH HOH . 
D 4 HOH A 41 3416 3416 HOH HOH . 
D 4 HOH A 42 3417 3417 HOH HOH . 
D 4 HOH A 43 3418 3418 HOH HOH . 
D 4 HOH A 44 3419 3419 HOH HOH . 
D 4 HOH A 45 3420 3420 HOH HOH . 
D 4 HOH A 46 3421 3421 HOH HOH . 
D 4 HOH A 47 3422 3422 HOH HOH . 
D 4 HOH A 48 3423 3423 HOH HOH . 
D 4 HOH A 49 3424 3424 HOH HOH . 
D 4 HOH A 50 3425 3425 HOH HOH . 
D 4 HOH A 51 3426 3426 HOH HOH . 
D 4 HOH A 52 3427 3427 HOH HOH . 
D 4 HOH A 53 3428 3428 HOH HOH . 
D 4 HOH A 54 3429 3429 HOH HOH . 
D 4 HOH A 55 3430 3430 HOH HOH . 
D 4 HOH A 56 3431 3431 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C5 R1P . . . B 2 21.67 90.619 77.11 1 3.84 ? C5 R1P 291 A 1 
HETATM 2 O O5 R1P . . . B 2 21.652 91.899 77.885 1 7.67 ? O5 R1P 291 A 1 
HETATM 3 C C4 R1P . . . B 2 20.431 89.888 76.752 1 2.43 ? C4 R1P 291 A 1 
HETATM 4 O O4 R1P . . . B 2 19.665 90.863 75.884 1 8.52 ? O4 R1P 291 A 1 
HETATM 5 C C1 R1P . . . B 2 19.166 90.354 74.642 1 4.9 ? C1 R1P 291 A 1 
HETATM 6 C C2 R1P . . . B 2 20.099 89.019 74.517 1 4.15 ? C2 R1P 291 A 1 
HETATM 7 O O2 R1P . . . B 2 19.488 88.008 73.702 1 4.13 ? O2 R1P 291 A 1 
HETATM 8 C C3 R1P . . . B 2 20.417 88.545 75.975 1 4.27 ? C3 R1P 291 A 1 
HETATM 9 O O3 R1P . . . B 2 19.366 87.658 76.395 1 5.03 ? O3 R1P 291 A 1 
HETATM 10 O O1 R1P . . . B 2 17.671 89.663 74.959 1 -2.41 ? O1 R1P 291 A 1 
HETATM 11 P P R1P . . . B 2 16.464 89.647 73.721 1 -2.18 ? P R1P 291 A 1 
HETATM 12 O O1P R1P . . . B 2 15.15 89.01 74.146 1 0.82 ? O1P R1P 291 A 1 
HETATM 13 O O2P R1P . . . B 2 16.505 91.144 73.508 1 1.61 ? O2P R1P 291 A 1 
HETATM 14 O O3P R1P . . . B 2 17.158 89.048 72.525 1 1.01 ? O3P R1P 291 A 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           733 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           14 
#