data_1A9W # _model_server_result.job_id '_bOI9bAFmYjKsMr8GDFd1w' _model_server_result.datetime_utc '2025-07-01 21:42:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1a9w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":147}' # _entry.id 1A9W # _exptl.entry_id 1A9W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1A9W _cell.length_a 62.8 _cell.length_b 62.8 _cell.length_c 320.9 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1A9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 E FE HEM . A HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc2 E FE HEM . A HEM 142 1_555 F C CMO . A CMO 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? metalc ? metalc3 E FE HEM . A HEM 142 1_555 F O CMO . A CMO 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc4 B NE2 HIS 92 E HIS 92 1_555 G FE HEM . E HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc5 G FE HEM . E HEM 147 1_555 H C CMO . E CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? metalc ? metalc6 G FE HEM . E HEM 147 1_555 H O CMO . E CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.994 ? metalc ? metalc7 C NE2 HIS 87 C HIS 87 1_555 I FE HEM . C HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc8 I FE HEM . C HEM 142 1_555 J C CMO . C CMO 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? metalc ? metalc9 I FE HEM . C HEM 142 1_555 J O CMO . C CMO 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? metalc ? metalc10 D NE2 HIS 92 F HIS 92 1_555 K FE HEM . F HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc11 K FE HEM . F HEM 147 1_555 L C CMO . F CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? metalc ? metalc12 K FE HEM . F HEM 147 1_555 L O CMO . F CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.006 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 130 n n CHA C4D HEM doub 131 n n CHA HHA HEM sing 132 n n CHB C4A HEM sing 133 n n CHB C1B HEM doub 134 n n CHB HHB HEM sing 135 n n CHC C4B HEM sing 136 n n CHC C1C HEM doub 137 n n CHC HHC HEM sing 138 n n CHD C4C HEM doub 139 n n CHD C1D HEM sing 140 n n CHD HHD HEM sing 141 n n C1A C2A HEM doub 142 n y C1A NA HEM sing 143 n y C2A C3A HEM sing 144 n y C2A CAA HEM sing 145 n n C3A C4A HEM doub 146 n y C3A CMA HEM sing 147 n n C4A NA HEM sing 148 n y CMA HMA HEM sing 149 n n CMA HMAA HEM sing 150 n n CMA HMAB HEM sing 151 n n CAA CBA HEM sing 152 n n CAA HAA HEM sing 153 n n CAA HAAA HEM sing 154 n n CBA CGA HEM sing 155 n n CBA HBA HEM sing 156 n n CBA HBAA HEM sing 157 n n CGA O1A HEM doub 158 n n CGA O2A HEM sing 159 n n C1B C2B HEM sing 160 n n C1B NB HEM sing 161 n n C2B C3B HEM doub 162 n n C2B CMB HEM sing 163 n n C3B C4B HEM sing 164 n n C3B CAB HEM sing 165 n n C4B NB HEM doub 166 n n CMB HMB HEM sing 167 n n CMB HMBA HEM sing 168 n n CMB HMBB HEM sing 169 n n CAB CBB HEM doub 170 n n CAB HAB HEM sing 171 n n CBB HBB HEM sing 172 n n CBB HBBA HEM sing 173 n n C1C C2C HEM sing 174 n y C1C NC HEM sing 175 n y C2C C3C HEM doub 176 n y C2C CMC HEM sing 177 n n C3C C4C HEM sing 178 n y C3C CAC HEM sing 179 n n C4C NC HEM sing 180 n y CMC HMC HEM sing 181 n n CMC HMCA HEM sing 182 n n CMC HMCB HEM sing 183 n n CAC CBC HEM doub 184 n n CAC HAC HEM sing 185 n n CBC HBC HEM sing 186 n n CBC HBCA HEM sing 187 n n C1D C2D HEM sing 188 n n C1D ND HEM doub 189 n n C2D C3D HEM doub 190 n n C2D CMD HEM sing 191 n n C3D C4D HEM sing 192 n n C3D CAD HEM sing 193 n n C4D ND HEM sing 194 n n CMD HMD HEM sing 195 n n CMD HMDA HEM sing 196 n n CMD HMDB HEM sing 197 n n CAD CBD HEM sing 198 n n CAD HAD HEM sing 199 n n CAD HADA HEM sing 200 n n CBD CGD HEM sing 201 n n CBD HBD HEM sing 202 n n CBD HBDA HEM sing 203 n n CGD O1D HEM doub 204 n n CGD O2D HEM sing 205 n n O2A H2A HEM sing 206 n n O2D H2D HEM sing 207 n n FE NA HEM sing 208 n n FE NB HEM sing 209 n n FE NC HEM sing 210 n n FE ND HEM sing 211 n n # _atom_sites.entry_id 1A9W _atom_sites.fract_transf_matrix[1][1] 0.015924 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015924 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003116 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HEM A 1 142 142 HEM HEM . F 4 CMO A 1 143 143 CMO CMO . G 3 HEM E 1 147 147 HEM HEM . H 4 CMO E 1 148 148 CMO CMO . I 3 HEM C 1 142 142 HEM HEM . J 4 CMO C 1 143 143 CMO CMO . K 3 HEM F 1 147 147 HEM HEM . L 4 CMO F 1 148 148 CMO CMO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . K 3 15.24 30.751 81.662 1 59.51 ? CHA HEM 147 F 1 HETATM 2 C CHB HEM . . . K 3 10.951 29.035 80.427 1 59.51 ? CHB HEM 147 F 1 HETATM 3 C CHC HEM . . . K 3 12.802 27.676 76.151 1 59.51 ? CHC HEM 147 F 1 HETATM 4 C CHD HEM . . . K 3 17.153 28.662 77.8 1 59.51 ? CHD HEM 147 F 1 HETATM 5 C C1A HEM . . . K 3 13.933 30.293 81.734 1 59.51 ? C1A HEM 147 F 1 HETATM 6 C C2A HEM . . . K 3 13.066 30.37 82.938 1 59.51 ? C2A HEM 147 F 1 HETATM 7 C C3A HEM . . . K 3 11.859 29.972 82.523 1 59.51 ? C3A HEM 147 F 1 HETATM 8 C C4A HEM . . . K 3 11.934 29.538 81.194 1 59.51 ? C4A HEM 147 F 1 HETATM 9 C CMA HEM . . . K 3 10.544 29.968 83.384 1 59.51 ? CMA HEM 147 F 1 HETATM 10 C CAA HEM . . . K 3 13.584 30.807 84.281 1 59.51 ? CAA HEM 147 F 1 HETATM 11 C CBA HEM . . . K 3 13.49 32.364 84.403 1 59.51 ? CBA HEM 147 F 1 HETATM 12 C CGA HEM . . . K 3 13.6 32.989 85.793 1 59.51 ? CGA HEM 147 F 1 HETATM 13 O O1A HEM . . . K 3 13.903 32.234 86.74 1 59.51 ? O1A HEM 147 F 1 HETATM 14 O O2A HEM . . . K 3 13.378 34.214 85.882 1 59.51 ? O2A HEM 147 F 1 HETATM 15 C C1B HEM . . . K 3 11.04 28.593 79.11 1 59.51 ? C1B HEM 147 F 1 HETATM 16 C C2B HEM . . . K 3 9.961 28.172 78.219 1 59.51 ? C2B HEM 147 F 1 HETATM 17 C C3B HEM . . . K 3 10.444 27.877 76.977 1 59.51 ? C3B HEM 147 F 1 HETATM 18 C C4B HEM . . . K 3 11.871 28 77.155 1 59.51 ? C4B HEM 147 F 1 HETATM 19 C CMB HEM . . . K 3 8.466 28.092 78.705 1 59.51 ? CMB HEM 147 F 1 HETATM 20 C CAB HEM . . . K 3 9.767 27.512 75.682 1 59.51 ? CAB HEM 147 F 1 HETATM 21 C CBB HEM . . . K 3 8.759 26.35 75.787 1 59.51 ? CBB HEM 147 F 1 HETATM 22 C C1C HEM . . . K 3 14.256 27.741 76.219 1 59.51 ? C1C HEM 147 F 1 HETATM 23 C C2C HEM . . . K 3 15.079 27.15 75.235 1 59.51 ? C2C HEM 147 F 1 HETATM 24 C C3C HEM . . . K 3 16.308 27.497 75.661 1 59.51 ? C3C HEM 147 F 1 HETATM 25 C C4C HEM . . . K 3 16.198 28.187 76.944 1 59.51 ? C4C HEM 147 F 1 HETATM 26 C CMC HEM . . . K 3 14.686 26.347 74.03 1 59.51 ? CMC HEM 147 F 1 HETATM 27 C CAC HEM . . . K 3 17.73 27.293 75.046 1 59.51 ? CAC HEM 147 F 1 HETATM 28 C CBC HEM . . . K 3 17.857 25.97 74.275 1 59.51 ? CBC HEM 147 F 1 HETATM 29 C C1D HEM . . . K 3 17.093 29.331 78.976 1 59.51 ? C1D HEM 147 F 1 HETATM 30 C C2D HEM . . . K 3 18.142 29.813 79.753 1 59.51 ? C2D HEM 147 F 1 HETATM 31 C C3D HEM . . . K 3 17.618 30.407 80.844 1 59.51 ? C3D HEM 147 F 1 HETATM 32 C C4D HEM . . . K 3 16.162 30.285 80.747 1 59.51 ? C4D HEM 147 F 1 HETATM 33 C CMD HEM . . . K 3 19.703 29.686 79.404 1 59.51 ? CMD HEM 147 F 1 HETATM 34 C CAD HEM . . . K 3 18.424 31.083 81.982 1 59.51 ? CAD HEM 147 F 1 HETATM 35 C CBD HEM . . . K 3 18.856 30.116 83.059 1 59.51 ? CBD HEM 147 F 1 HETATM 36 C CGD HEM . . . K 3 19.428 30.684 84.348 1 59.51 ? CGD HEM 147 F 1 HETATM 37 O O1D HEM . . . K 3 18.913 31.759 84.753 1 59.51 ? O1D HEM 147 F 1 HETATM 38 O O2D HEM . . . K 3 20.356 30.019 84.883 1 59.51 ? O2D HEM 147 F 1 HETATM 39 N NA HEM . . . K 3 13.325 29.71 80.688 1 59.51 ? NA HEM 147 F 1 HETATM 40 N NB HEM . . . K 3 12.218 28.458 78.373 1 59.51 ? NB HEM 147 F 1 HETATM 41 N NC HEM . . . K 3 14.863 28.363 77.273 1 59.51 ? NC HEM 147 F 1 HETATM 42 N ND HEM . . . K 3 15.871 29.628 79.589 1 59.51 ? ND HEM 147 F 1 HETATM 43 FE FE HEM . . . K 3 14.047 29.015 78.99 1 59.51 ? FE HEM 147 F 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 43 #