data_1ABE # _model_server_result.job_id 3u9QZhQ0Wb9t7hFnhjKMXw _model_server_result.datetime_utc '2025-03-05 20:23:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1abe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":307}' # _entry.id 1ABE # _exptl.entry_id 1ABE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.13 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-L-arabinopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ABE _cell.length_a 55.46 _cell.length_b 71.82 _cell.length_c 77.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ABE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H10 O5' _chem_comp.formula_weight 150.13 _chem_comp.id ARA _chem_comp.mon_nstd_flag . _chem_comp.name alpha-L-arabinopyranose _chem_comp.type 'l-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-L-arabinose;L-arabinose;arabinose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ARA sing 13 n n C1 O1 ARA sing 14 n n C1 O5 ARA sing 15 n n C1 H1 ARA sing 16 n n C2 C3 ARA sing 17 n n C2 O2 ARA sing 18 n n C2 H2 ARA sing 19 n n C3 C4 ARA sing 20 n n C3 O3 ARA sing 21 n n C3 H3 ARA sing 22 n n C4 C5 ARA sing 23 n n C4 O4 ARA sing 24 n n C4 H4 ARA sing 25 n n C5 O5 ARA sing 26 n n C5 H51 ARA sing 27 n n C5 H52 ARA sing 28 n n O1 HO1 ARA sing 29 n n O2 HO2 ARA sing 30 n n O3 HO3 ARA sing 31 n n O4 HO4 ARA sing 32 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version ARA LArapa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 ARA a-L-arabinopyranose 'COMMON NAME' GMML 1 ARA a-L-Arap 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 ARA Ara 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1ABE _atom_sites.fract_transf_matrix[1][1] 0.018031 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013924 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012847 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ARA A 1 307 307 ARA ARA . C 3 ARB A 1 308 308 ARB ARB . D 4 HOH A 1 309 309 HOH HOH . D 4 HOH A 2 310 310 HOH HOH . D 4 HOH A 3 311 311 HOH HOH . D 4 HOH A 4 312 312 HOH HOH . D 4 HOH A 5 313 313 HOH HOH . D 4 HOH A 6 314 314 HOH HOH . D 4 HOH A 7 315 315 HOH HOH . D 4 HOH A 8 316 316 HOH HOH . D 4 HOH A 9 317 317 HOH HOH . D 4 HOH A 10 318 318 HOH HOH . D 4 HOH A 11 319 319 HOH HOH . D 4 HOH A 12 320 320 HOH HOH . D 4 HOH A 13 321 321 HOH HOH . D 4 HOH A 14 322 322 HOH HOH . D 4 HOH A 15 323 323 HOH HOH . D 4 HOH A 16 324 324 HOH HOH . D 4 HOH A 17 325 325 HOH HOH . D 4 HOH A 18 326 326 HOH HOH . D 4 HOH A 19 327 327 HOH HOH . D 4 HOH A 20 328 328 HOH HOH . D 4 HOH A 21 329 329 HOH HOH . D 4 HOH A 22 330 330 HOH HOH . D 4 HOH A 23 331 331 HOH HOH . D 4 HOH A 24 332 332 HOH HOH . D 4 HOH A 25 333 333 HOH HOH . D 4 HOH A 26 334 334 HOH HOH . D 4 HOH A 27 335 335 HOH HOH . D 4 HOH A 28 336 336 HOH HOH . D 4 HOH A 29 337 337 HOH HOH . D 4 HOH A 30 338 338 HOH HOH . D 4 HOH A 31 339 339 HOH HOH . D 4 HOH A 32 340 340 HOH HOH . D 4 HOH A 33 341 341 HOH HOH . D 4 HOH A 34 342 342 HOH HOH . D 4 HOH A 35 343 343 HOH HOH . D 4 HOH A 36 344 344 HOH HOH . D 4 HOH A 37 345 345 HOH HOH . D 4 HOH A 38 346 346 HOH HOH . D 4 HOH A 39 347 347 HOH HOH . D 4 HOH A 40 348 348 HOH HOH . D 4 HOH A 41 349 349 HOH HOH . D 4 HOH A 42 350 350 HOH HOH . D 4 HOH A 43 351 351 HOH HOH . D 4 HOH A 44 352 352 HOH HOH . D 4 HOH A 45 353 353 HOH HOH . D 4 HOH A 46 354 354 HOH HOH . D 4 HOH A 47 355 355 HOH HOH . D 4 HOH A 48 356 356 HOH HOH . D 4 HOH A 49 357 357 HOH HOH . D 4 HOH A 50 358 358 HOH HOH . D 4 HOH A 51 359 359 HOH HOH . D 4 HOH A 52 360 360 HOH HOH . D 4 HOH A 53 361 361 HOH HOH . D 4 HOH A 54 362 362 HOH HOH . D 4 HOH A 55 363 363 HOH HOH . D 4 HOH A 56 365 365 HOH HOH . D 4 HOH A 57 366 366 HOH HOH . D 4 HOH A 58 367 367 HOH HOH . D 4 HOH A 59 368 368 HOH HOH . D 4 HOH A 60 369 369 HOH HOH . D 4 HOH A 61 370 370 HOH HOH . D 4 HOH A 62 371 371 HOH HOH . D 4 HOH A 63 372 372 HOH HOH . D 4 HOH A 64 373 373 HOH HOH . D 4 HOH A 65 374 374 HOH HOH . D 4 HOH A 66 375 375 HOH HOH . D 4 HOH A 67 376 376 HOH HOH . D 4 HOH A 68 377 377 HOH HOH . D 4 HOH A 69 378 378 HOH HOH . D 4 HOH A 70 379 379 HOH HOH . D 4 HOH A 71 380 380 HOH HOH . D 4 HOH A 72 381 381 HOH HOH . D 4 HOH A 73 382 382 HOH HOH . D 4 HOH A 74 383 383 HOH HOH . D 4 HOH A 75 384 384 HOH HOH . D 4 HOH A 76 385 385 HOH HOH . D 4 HOH A 77 386 386 HOH HOH . D 4 HOH A 78 387 387 HOH HOH . D 4 HOH A 79 388 388 HOH HOH . D 4 HOH A 80 389 389 HOH HOH . D 4 HOH A 81 390 390 HOH HOH . D 4 HOH A 82 391 391 HOH HOH . D 4 HOH A 83 392 392 HOH HOH . D 4 HOH A 84 393 393 HOH HOH . D 4 HOH A 85 394 394 HOH HOH . D 4 HOH A 86 395 395 HOH HOH . D 4 HOH A 87 396 396 HOH HOH . D 4 HOH A 88 397 397 HOH HOH . D 4 HOH A 89 398 398 HOH HOH . D 4 HOH A 90 399 399 HOH HOH . D 4 HOH A 91 400 400 HOH HOH . D 4 HOH A 92 401 401 HOH HOH . D 4 HOH A 93 402 402 HOH HOH . D 4 HOH A 94 403 403 HOH HOH . D 4 HOH A 95 404 404 HOH HOH . D 4 HOH A 96 405 405 HOH HOH . D 4 HOH A 97 406 406 HOH HOH . D 4 HOH A 98 407 407 HOH HOH . D 4 HOH A 99 408 408 HOH HOH . D 4 HOH A 100 409 409 HOH HOH . D 4 HOH A 101 410 410 HOH HOH . D 4 HOH A 102 411 411 HOH HOH . D 4 HOH A 103 412 412 HOH HOH . D 4 HOH A 104 414 414 HOH HOH . D 4 HOH A 105 415 415 HOH HOH . D 4 HOH A 106 416 416 HOH HOH . D 4 HOH A 107 417 417 HOH HOH . D 4 HOH A 108 418 418 HOH HOH . D 4 HOH A 109 419 419 HOH HOH . D 4 HOH A 110 420 420 HOH HOH . D 4 HOH A 111 421 421 HOH HOH . D 4 HOH A 112 423 423 HOH HOH . D 4 HOH A 113 424 424 HOH HOH . D 4 HOH A 114 425 425 HOH HOH . D 4 HOH A 115 426 426 HOH HOH . D 4 HOH A 116 427 427 HOH HOH . D 4 HOH A 117 428 428 HOH HOH . D 4 HOH A 118 429 429 HOH HOH . D 4 HOH A 119 430 430 HOH HOH . D 4 HOH A 120 431 431 HOH HOH . D 4 HOH A 121 432 432 HOH HOH . D 4 HOH A 122 433 433 HOH HOH . D 4 HOH A 123 434 434 HOH HOH . D 4 HOH A 124 435 435 HOH HOH . D 4 HOH A 125 436 436 HOH HOH . D 4 HOH A 126 437 437 HOH HOH . D 4 HOH A 127 438 438 HOH HOH . D 4 HOH A 128 439 439 HOH HOH . D 4 HOH A 129 440 440 HOH HOH . D 4 HOH A 130 441 441 HOH HOH . D 4 HOH A 131 442 442 HOH HOH . D 4 HOH A 132 443 443 HOH HOH . D 4 HOH A 133 444 444 HOH HOH . D 4 HOH A 134 445 445 HOH HOH . D 4 HOH A 135 446 446 HOH HOH . D 4 HOH A 136 447 447 HOH HOH . D 4 HOH A 137 448 448 HOH HOH . D 4 HOH A 138 449 449 HOH HOH . D 4 HOH A 139 450 450 HOH HOH . D 4 HOH A 140 451 451 HOH HOH . D 4 HOH A 141 452 452 HOH HOH . D 4 HOH A 142 453 453 HOH HOH . D 4 HOH A 143 454 454 HOH HOH . D 4 HOH A 144 455 455 HOH HOH . D 4 HOH A 145 456 456 HOH HOH . D 4 HOH A 146 457 457 HOH HOH . D 4 HOH A 147 458 458 HOH HOH . D 4 HOH A 148 459 459 HOH HOH . D 4 HOH A 149 460 460 HOH HOH . D 4 HOH A 150 461 461 HOH HOH . D 4 HOH A 151 462 462 HOH HOH . D 4 HOH A 152 463 463 HOH HOH . D 4 HOH A 153 464 464 HOH HOH . D 4 HOH A 154 465 465 HOH HOH . D 4 HOH A 155 466 466 HOH HOH . D 4 HOH A 156 467 467 HOH HOH . D 4 HOH A 157 468 468 HOH HOH . D 4 HOH A 158 469 469 HOH HOH . D 4 HOH A 159 470 470 HOH HOH . D 4 HOH A 160 471 471 HOH HOH . D 4 HOH A 161 472 472 HOH HOH . D 4 HOH A 162 473 473 HOH HOH . D 4 HOH A 163 474 474 HOH HOH . D 4 HOH A 164 475 475 HOH HOH . D 4 HOH A 165 476 476 HOH HOH . D 4 HOH A 166 477 477 HOH HOH . D 4 HOH A 167 478 478 HOH HOH . D 4 HOH A 168 479 479 HOH HOH . D 4 HOH A 169 480 480 HOH HOH . D 4 HOH A 170 481 481 HOH HOH . D 4 HOH A 171 482 482 HOH HOH . D 4 HOH A 172 483 483 HOH HOH . D 4 HOH A 173 484 484 HOH HOH . D 4 HOH A 174 485 485 HOH HOH . D 4 HOH A 175 486 486 HOH HOH . D 4 HOH A 176 487 487 HOH HOH . D 4 HOH A 177 488 488 HOH HOH . D 4 HOH A 178 489 489 HOH HOH . D 4 HOH A 179 490 490 HOH HOH . D 4 HOH A 180 491 491 HOH HOH . D 4 HOH A 181 492 492 HOH HOH . D 4 HOH A 182 493 493 HOH HOH . D 4 HOH A 183 494 494 HOH HOH . D 4 HOH A 184 495 495 HOH HOH . D 4 HOH A 185 496 496 HOH HOH . D 4 HOH A 186 497 497 HOH HOH . D 4 HOH A 187 498 498 HOH HOH . D 4 HOH A 188 499 499 HOH HOH . D 4 HOH A 189 500 500 HOH HOH . D 4 HOH A 190 501 501 HOH HOH . D 4 HOH A 191 502 502 HOH HOH . D 4 HOH A 192 503 503 HOH HOH . D 4 HOH A 193 504 504 HOH HOH . D 4 HOH A 194 505 505 HOH HOH . D 4 HOH A 195 506 506 HOH HOH . D 4 HOH A 196 507 507 HOH HOH . D 4 HOH A 197 508 508 HOH HOH . D 4 HOH A 198 509 509 HOH HOH . D 4 HOH A 199 510 510 HOH HOH . D 4 HOH A 200 511 511 HOH HOH . D 4 HOH A 201 512 512 HOH HOH . D 4 HOH A 202 513 513 HOH HOH . D 4 HOH A 203 514 514 HOH HOH . D 4 HOH A 204 515 515 HOH HOH . D 4 HOH A 205 516 516 HOH HOH . D 4 HOH A 206 517 517 HOH HOH . D 4 HOH A 207 518 518 HOH HOH . D 4 HOH A 208 519 519 HOH HOH . D 4 HOH A 209 520 520 HOH HOH . D 4 HOH A 210 521 521 HOH HOH . D 4 HOH A 211 522 522 HOH HOH . D 4 HOH A 212 523 523 HOH HOH . D 4 HOH A 213 524 524 HOH HOH . D 4 HOH A 214 525 525 HOH HOH . D 4 HOH A 215 526 526 HOH HOH . D 4 HOH A 216 527 527 HOH HOH . D 4 HOH A 217 528 528 HOH HOH . D 4 HOH A 218 529 529 HOH HOH . D 4 HOH A 219 530 530 HOH HOH . D 4 HOH A 220 531 531 HOH HOH . D 4 HOH A 221 532 532 HOH HOH . D 4 HOH A 222 533 533 HOH HOH . D 4 HOH A 223 534 534 HOH HOH . D 4 HOH A 224 535 535 HOH HOH . D 4 HOH A 225 536 536 HOH HOH . D 4 HOH A 226 537 537 HOH HOH . D 4 HOH A 227 538 538 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ARA . A . B 2 14.312 56.567 55.204 0.5 11.2 ? C1 ARA 307 A 1 HETATM 2 C C2 ARA . A . B 2 12.897 57.041 54.924 0.5 10.89 ? C2 ARA 307 A 1 HETATM 3 C C3 ARA . A . B 2 12.332 56.28 53.725 0.5 8.42 ? C3 ARA 307 A 1 HETATM 4 C C4 ARA . A . B 2 13.28 56.373 52.519 0.5 8.72 ? C4 ARA 307 A 1 HETATM 5 C C5 ARA . A . B 2 14.661 55.877 52.931 0.5 10.93 ? C5 ARA 307 A 1 HETATM 6 O O1 ARA . A . B 2 14.766 57.364 56.255 0.5 12.34 ? O1 ARA 307 A 1 HETATM 7 O O2 ARA . A . B 2 12.06 56.89 56.076 0.5 12.25 ? O2 ARA 307 A 1 HETATM 8 O O3 ARA . A . B 2 11.056 56.775 53.336 0.5 8.97 ? O3 ARA 307 A 1 HETATM 9 O O4 ARA . A . B 2 13.319 57.702 51.974 0.5 8.29 ? O4 ARA 307 A 1 HETATM 10 O O5 ARA . A . B 2 15.121 56.746 54.029 0.5 11.79 ? O5 ARA 307 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #