data_1ABF # _model_server_result.job_id rA7OjgqihE_B-AYFL-xGUQ _model_server_result.datetime_utc '2025-03-05 20:25:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1abf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":308}' # _entry.id 1ABF # _exptl.entry_id 1ABF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.156 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-fucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ABF _cell.length_a 55.92 _cell.length_b 72.02 _cell.length_c 78.02 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ABF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H12 O5' _chem_comp.formula_weight 164.156 _chem_comp.id FCB _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-fucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-fucose;6-deoxy-beta-D-galactopyranose;D-fucose;fucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FCB sing 106 n n C1 O1 FCB sing 107 n n C1 O5 FCB sing 108 n n C1 H1 FCB sing 109 n n C2 C3 FCB sing 110 n n C2 O2 FCB sing 111 n n C2 H2 FCB sing 112 n n C3 C4 FCB sing 113 n n C3 O3 FCB sing 114 n n C3 H3 FCB sing 115 n n C4 C5 FCB sing 116 n n C4 O4 FCB sing 117 n n C4 H4 FCB sing 118 n n C5 C6 FCB sing 119 n n C5 O5 FCB sing 120 n n C5 H5 FCB sing 121 n n C6 H61 FCB sing 122 n n C6 H62 FCB sing 123 n n C6 H63 FCB sing 124 n n O1 HO1 FCB sing 125 n n O2 HO2 FCB sing 126 n n O3 HO3 FCB sing 127 n n O4 HO4 FCB sing 128 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version FCB DFucpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 FCB b-D-fucopyranose 'COMMON NAME' GMML 1 FCB b-D-Fucp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 FCB Fuc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1ABF _atom_sites.fract_transf_matrix[1][1] 0.017883 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FCA A 1 307 307 FCA FCA . C 3 FCB A 1 308 308 FCB FCB . D 4 HOH A 1 311 311 HOH HOH . D 4 HOH A 2 316 316 HOH HOH . D 4 HOH A 3 317 317 HOH HOH . D 4 HOH A 4 319 319 HOH HOH . D 4 HOH A 5 342 342 HOH HOH . D 4 HOH A 6 343 343 HOH HOH . D 4 HOH A 7 344 344 HOH HOH . D 4 HOH A 8 349 349 HOH HOH . D 4 HOH A 9 353 353 HOH HOH . D 4 HOH A 10 357 357 HOH HOH . D 4 HOH A 11 364 364 HOH HOH . D 4 HOH A 12 365 365 HOH HOH . D 4 HOH A 13 384 384 HOH HOH . D 4 HOH A 14 392 392 HOH HOH . D 4 HOH A 15 393 393 HOH HOH . D 4 HOH A 16 394 394 HOH HOH . D 4 HOH A 17 395 395 HOH HOH . D 4 HOH A 18 396 396 HOH HOH . D 4 HOH A 19 403 403 HOH HOH . D 4 HOH A 20 410 410 HOH HOH . D 4 HOH A 21 411 411 HOH HOH . D 4 HOH A 22 412 412 HOH HOH . D 4 HOH A 23 415 415 HOH HOH . D 4 HOH A 24 424 424 HOH HOH . D 4 HOH A 25 426 426 HOH HOH . D 4 HOH A 26 428 428 HOH HOH . D 4 HOH A 27 429 429 HOH HOH . D 4 HOH A 28 432 432 HOH HOH . D 4 HOH A 29 433 433 HOH HOH . D 4 HOH A 30 434 434 HOH HOH . D 4 HOH A 31 437 437 HOH HOH . D 4 HOH A 32 439 439 HOH HOH . D 4 HOH A 33 440 440 HOH HOH . D 4 HOH A 34 441 441 HOH HOH . D 4 HOH A 35 442 442 HOH HOH . D 4 HOH A 36 443 443 HOH HOH . D 4 HOH A 37 446 446 HOH HOH . D 4 HOH A 38 447 447 HOH HOH . D 4 HOH A 39 448 448 HOH HOH . D 4 HOH A 40 450 450 HOH HOH . D 4 HOH A 41 451 451 HOH HOH . D 4 HOH A 42 456 456 HOH HOH . D 4 HOH A 43 458 458 HOH HOH . D 4 HOH A 44 462 462 HOH HOH . D 4 HOH A 45 463 463 HOH HOH . D 4 HOH A 46 464 464 HOH HOH . D 4 HOH A 47 467 467 HOH HOH . D 4 HOH A 48 469 469 HOH HOH . D 4 HOH A 49 472 472 HOH HOH . D 4 HOH A 50 473 473 HOH HOH . D 4 HOH A 51 476 476 HOH HOH . D 4 HOH A 52 477 477 HOH HOH . D 4 HOH A 53 480 480 HOH HOH . D 4 HOH A 54 481 481 HOH HOH . D 4 HOH A 55 482 482 HOH HOH . D 4 HOH A 56 483 483 HOH HOH . D 4 HOH A 57 486 486 HOH HOH . D 4 HOH A 58 487 487 HOH HOH . D 4 HOH A 59 488 488 HOH HOH . D 4 HOH A 60 489 489 HOH HOH . D 4 HOH A 61 490 490 HOH HOH . D 4 HOH A 62 491 491 HOH HOH . D 4 HOH A 63 492 492 HOH HOH . D 4 HOH A 64 493 493 HOH HOH . D 4 HOH A 65 494 494 HOH HOH . D 4 HOH A 66 495 495 HOH HOH . D 4 HOH A 67 496 496 HOH HOH . D 4 HOH A 68 497 497 HOH HOH . D 4 HOH A 69 501 501 HOH HOH . D 4 HOH A 70 503 503 HOH HOH . D 4 HOH A 71 504 504 HOH HOH . D 4 HOH A 72 505 505 HOH HOH . D 4 HOH A 73 507 507 HOH HOH . D 4 HOH A 74 509 509 HOH HOH . D 4 HOH A 75 513 513 HOH HOH . D 4 HOH A 76 516 516 HOH HOH . D 4 HOH A 77 517 517 HOH HOH . D 4 HOH A 78 518 518 HOH HOH . D 4 HOH A 79 519 519 HOH HOH . D 4 HOH A 80 520 520 HOH HOH . D 4 HOH A 81 523 523 HOH HOH . D 4 HOH A 82 524 524 HOH HOH . D 4 HOH A 83 525 525 HOH HOH . D 4 HOH A 84 526 526 HOH HOH . D 4 HOH A 85 528 528 HOH HOH . D 4 HOH A 86 529 529 HOH HOH . D 4 HOH A 87 530 530 HOH HOH . D 4 HOH A 88 533 533 HOH HOH . D 4 HOH A 89 534 534 HOH HOH . D 4 HOH A 90 535 535 HOH HOH . D 4 HOH A 91 536 536 HOH HOH . D 4 HOH A 92 537 537 HOH HOH . D 4 HOH A 93 538 538 HOH HOH . D 4 HOH A 94 539 539 HOH HOH . D 4 HOH A 95 544 544 HOH HOH . D 4 HOH A 96 545 545 HOH HOH . D 4 HOH A 97 547 547 HOH HOH . D 4 HOH A 98 562 562 HOH HOH . D 4 HOH A 99 563 563 HOH HOH . D 4 HOH A 100 569 569 HOH HOH . D 4 HOH A 101 572 572 HOH HOH . D 4 HOH A 102 573 573 HOH HOH . D 4 HOH A 103 574 574 HOH HOH . D 4 HOH A 104 575 575 HOH HOH . D 4 HOH A 105 577 577 HOH HOH . D 4 HOH A 106 578 578 HOH HOH . D 4 HOH A 107 585 585 HOH HOH . D 4 HOH A 108 586 586 HOH HOH . D 4 HOH A 109 589 589 HOH HOH . D 4 HOH A 110 591 591 HOH HOH . D 4 HOH A 111 594 594 HOH HOH . D 4 HOH A 112 598 598 HOH HOH . D 4 HOH A 113 601 601 HOH HOH . D 4 HOH A 114 602 602 HOH HOH . D 4 HOH A 115 603 603 HOH HOH . D 4 HOH A 116 605 605 HOH HOH . D 4 HOH A 117 608 608 HOH HOH . D 4 HOH A 118 610 610 HOH HOH . D 4 HOH A 119 611 611 HOH HOH . D 4 HOH A 120 612 612 HOH HOH . D 4 HOH A 121 613 613 HOH HOH . D 4 HOH A 122 615 615 HOH HOH . D 4 HOH A 123 620 620 HOH HOH . D 4 HOH A 124 621 621 HOH HOH . D 4 HOH A 125 627 627 HOH HOH . D 4 HOH A 126 630 630 HOH HOH . D 4 HOH A 127 644 644 HOH HOH . D 4 HOH A 128 646 646 HOH HOH . D 4 HOH A 129 654 654 HOH HOH . D 4 HOH A 130 655 655 HOH HOH . D 4 HOH A 131 656 656 HOH HOH . D 4 HOH A 132 657 657 HOH HOH . D 4 HOH A 133 661 661 HOH HOH . D 4 HOH A 134 663 663 HOH HOH . D 4 HOH A 135 667 667 HOH HOH . D 4 HOH A 136 669 669 HOH HOH . D 4 HOH A 137 680 680 HOH HOH . D 4 HOH A 138 685 685 HOH HOH . D 4 HOH A 139 686 686 HOH HOH . D 4 HOH A 140 691 691 HOH HOH . D 4 HOH A 141 692 692 HOH HOH . D 4 HOH A 142 697 697 HOH HOH . D 4 HOH A 143 701 701 HOH HOH . D 4 HOH A 144 702 702 HOH HOH . D 4 HOH A 145 703 703 HOH HOH . D 4 HOH A 146 706 706 HOH HOH . D 4 HOH A 147 707 707 HOH HOH . D 4 HOH A 148 708 708 HOH HOH . D 4 HOH A 149 709 709 HOH HOH . D 4 HOH A 150 715 715 HOH HOH . D 4 HOH A 151 719 719 HOH HOH . D 4 HOH A 152 723 723 HOH HOH . D 4 HOH A 153 725 725 HOH HOH . D 4 HOH A 154 726 726 HOH HOH . D 4 HOH A 155 730 730 HOH HOH . D 4 HOH A 156 732 732 HOH HOH . D 4 HOH A 157 733 733 HOH HOH . D 4 HOH A 158 734 734 HOH HOH . D 4 HOH A 159 735 735 HOH HOH . D 4 HOH A 160 736 736 HOH HOH . D 4 HOH A 161 737 737 HOH HOH . D 4 HOH A 162 739 739 HOH HOH . D 4 HOH A 163 740 740 HOH HOH . D 4 HOH A 164 741 741 HOH HOH . D 4 HOH A 165 744 744 HOH HOH . D 4 HOH A 166 748 748 HOH HOH . D 4 HOH A 167 749 749 HOH HOH . D 4 HOH A 168 752 752 HOH HOH . D 4 HOH A 169 753 753 HOH HOH . D 4 HOH A 170 754 754 HOH HOH . D 4 HOH A 171 756 756 HOH HOH . D 4 HOH A 172 757 757 HOH HOH . D 4 HOH A 173 759 759 HOH HOH . D 4 HOH A 174 760 760 HOH HOH . D 4 HOH A 175 761 761 HOH HOH . D 4 HOH A 176 762 762 HOH HOH . D 4 HOH A 177 763 763 HOH HOH . D 4 HOH A 178 764 764 HOH HOH . D 4 HOH A 179 768 768 HOH HOH . D 4 HOH A 180 769 769 HOH HOH . D 4 HOH A 181 770 770 HOH HOH . D 4 HOH A 182 771 771 HOH HOH . D 4 HOH A 183 773 773 HOH HOH . D 4 HOH A 184 774 774 HOH HOH . D 4 HOH A 185 775 775 HOH HOH . D 4 HOH A 186 776 776 HOH HOH . D 4 HOH A 187 779 779 HOH HOH . D 4 HOH A 188 780 780 HOH HOH . D 4 HOH A 189 781 781 HOH HOH . D 4 HOH A 190 782 782 HOH HOH . D 4 HOH A 191 783 783 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FCB . B . C 3 14.092 56.35 55.196 0.5 6.2 ? C1 FCB 308 A 1 HETATM 2 C C2 FCB . B . C 3 12.678 56.767 54.877 0.5 6.5 ? C2 FCB 308 A 1 HETATM 3 C C3 FCB . B . C 3 12.196 56.135 53.772 0.5 5.82 ? C3 FCB 308 A 1 HETATM 4 C C4 FCB . B . C 3 13.05 56.357 52.472 0.5 5.82 ? C4 FCB 308 A 1 HETATM 5 C C5 FCB . B . C 3 14.47 55.847 52.83 0.5 8.14 ? C5 FCB 308 A 1 HETATM 6 C C6 FCB . B . C 3 15.54 56.149 51.803 0.5 6.71 ? C6 FCB 308 A 1 HETATM 7 O O1 FCB . B . C 3 14.625 57.176 56.216 0.5 5.28 ? O1 FCB 308 A 1 HETATM 8 O O2 FCB . B . C 3 11.863 56.407 56.045 0.5 5.61 ? O2 FCB 308 A 1 HETATM 9 O O3 FCB . B . C 3 10.759 56.537 53.39 0.5 4.86 ? O3 FCB 308 A 1 HETATM 10 O O4 FCB . B . C 3 13.127 57.772 52.176 0.5 4.63 ? O4 FCB 308 A 1 HETATM 11 O O5 FCB . B . C 3 14.913 56.486 54.037 0.5 8.49 ? O5 FCB 308 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #