data_1ABS # _model_server_result.job_id Qp7N9KLhgqVVH-v3jgON1Q _model_server_result.datetime_utc '2025-02-28 21:24:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1abs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":154}' # _entry.id 1ABS # _exptl.entry_id 1ABS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ABS _cell.length_a 90.42 _cell.length_b 90.42 _cell.length_c 45.4 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ABS _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 94 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 154 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.246 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 117 n n CHA C4D HEM doub 118 n n CHA HHA HEM sing 119 n n CHB C4A HEM sing 120 n n CHB C1B HEM doub 121 n n CHB HHB HEM sing 122 n n CHC C4B HEM sing 123 n n CHC C1C HEM doub 124 n n CHC HHC HEM sing 125 n n CHD C4C HEM doub 126 n n CHD C1D HEM sing 127 n n CHD HHD HEM sing 128 n n C1A C2A HEM doub 129 n y C1A NA HEM sing 130 n y C2A C3A HEM sing 131 n y C2A CAA HEM sing 132 n n C3A C4A HEM doub 133 n y C3A CMA HEM sing 134 n n C4A NA HEM sing 135 n y CMA HMA HEM sing 136 n n CMA HMAA HEM sing 137 n n CMA HMAB HEM sing 138 n n CAA CBA HEM sing 139 n n CAA HAA HEM sing 140 n n CAA HAAA HEM sing 141 n n CBA CGA HEM sing 142 n n CBA HBA HEM sing 143 n n CBA HBAA HEM sing 144 n n CGA O1A HEM doub 145 n n CGA O2A HEM sing 146 n n C1B C2B HEM sing 147 n n C1B NB HEM sing 148 n n C2B C3B HEM doub 149 n n C2B CMB HEM sing 150 n n C3B C4B HEM sing 151 n n C3B CAB HEM sing 152 n n C4B NB HEM doub 153 n n CMB HMB HEM sing 154 n n CMB HMBA HEM sing 155 n n CMB HMBB HEM sing 156 n n CAB CBB HEM doub 157 n n CAB HAB HEM sing 158 n n CBB HBB HEM sing 159 n n CBB HBBA HEM sing 160 n n C1C C2C HEM sing 161 n y C1C NC HEM sing 162 n y C2C C3C HEM doub 163 n y C2C CMC HEM sing 164 n n C3C C4C HEM sing 165 n y C3C CAC HEM sing 166 n n C4C NC HEM sing 167 n y CMC HMC HEM sing 168 n n CMC HMCA HEM sing 169 n n CMC HMCB HEM sing 170 n n CAC CBC HEM doub 171 n n CAC HAC HEM sing 172 n n CBC HBC HEM sing 173 n n CBC HBCA HEM sing 174 n n C1D C2D HEM sing 175 n n C1D ND HEM doub 176 n n C2D C3D HEM doub 177 n n C2D CMD HEM sing 178 n n C3D C4D HEM sing 179 n n C3D CAD HEM sing 180 n n C4D ND HEM sing 181 n n CMD HMD HEM sing 182 n n CMD HMDA HEM sing 183 n n CMD HMDB HEM sing 184 n n CAD CBD HEM sing 185 n n CAD HAD HEM sing 186 n n CAD HADA HEM sing 187 n n CBD CGD HEM sing 188 n n CBD HBD HEM sing 189 n n CBD HBDA HEM sing 190 n n CGD O1D HEM doub 191 n n CGD O2D HEM sing 192 n n O2A H2A HEM sing 193 n n O2D H2D HEM sing 194 n n FE NA HEM sing 195 n n FE NB HEM sing 196 n n FE NC HEM sing 197 n n FE ND HEM sing 198 n n # _atom_sites.entry_id 1ABS _atom_sites.fract_transf_matrix[1][1] 0.01106 _atom_sites.fract_transf_matrix[1][2] 0.006385 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01277 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 156 156 SO4 SO4 . C 3 HEM A 1 154 154 HEM HEM . D 4 CMO A 1 155 155 CMO CMO . E 5 HOH A 1 202 202 HOH HOH . E 5 HOH A 2 203 203 HOH HOH . E 5 HOH A 3 204 204 HOH HOH . E 5 HOH A 4 205 205 HOH HOH . E 5 HOH A 5 206 206 HOH HOH . E 5 HOH A 6 207 207 HOH HOH . E 5 HOH A 7 208 208 HOH HOH . E 5 HOH A 8 209 209 HOH HOH . E 5 HOH A 9 210 210 HOH HOH . E 5 HOH A 10 211 211 HOH HOH . E 5 HOH A 11 213 213 HOH HOH . E 5 HOH A 12 215 215 HOH HOH . E 5 HOH A 13 216 216 HOH HOH . E 5 HOH A 14 217 217 HOH HOH . E 5 HOH A 15 218 218 HOH HOH . E 5 HOH A 16 219 219 HOH HOH . E 5 HOH A 17 220 220 HOH HOH . E 5 HOH A 18 222 222 HOH HOH . E 5 HOH A 19 223 223 HOH HOH . E 5 HOH A 20 225 225 HOH HOH . E 5 HOH A 21 226 226 HOH HOH . E 5 HOH A 22 228 228 HOH HOH . E 5 HOH A 23 232 232 HOH HOH . E 5 HOH A 24 234 234 HOH HOH . E 5 HOH A 25 236 236 HOH HOH . E 5 HOH A 26 237 237 HOH HOH . E 5 HOH A 27 239 239 HOH HOH . E 5 HOH A 28 240 240 HOH HOH . E 5 HOH A 29 241 241 HOH HOH . E 5 HOH A 30 242 242 HOH HOH . E 5 HOH A 31 246 246 HOH HOH . E 5 HOH A 32 247 247 HOH HOH . E 5 HOH A 33 248 248 HOH HOH . E 5 HOH A 34 249 249 HOH HOH . E 5 HOH A 35 251 251 HOH HOH . E 5 HOH A 36 252 252 HOH HOH . E 5 HOH A 37 253 253 HOH HOH . E 5 HOH A 38 254 254 HOH HOH . E 5 HOH A 39 255 255 HOH HOH . E 5 HOH A 40 256 256 HOH HOH . E 5 HOH A 41 257 257 HOH HOH . E 5 HOH A 42 259 259 HOH HOH . E 5 HOH A 43 260 260 HOH HOH . E 5 HOH A 44 262 262 HOH HOH . E 5 HOH A 45 263 263 HOH HOH . E 5 HOH A 46 266 266 HOH HOH . E 5 HOH A 47 267 267 HOH HOH . E 5 HOH A 48 268 268 HOH HOH . E 5 HOH A 49 269 269 HOH HOH . E 5 HOH A 50 270 270 HOH HOH . E 5 HOH A 51 275 275 HOH HOH . E 5 HOH A 52 280 280 HOH HOH . E 5 HOH A 53 281 281 HOH HOH . E 5 HOH A 54 282 282 HOH HOH . E 5 HOH A 55 286 286 HOH HOH . E 5 HOH A 56 291 291 HOH HOH . E 5 HOH A 57 292 292 HOH HOH . E 5 HOH A 58 293 293 HOH HOH . E 5 HOH A 59 294 294 HOH HOH . E 5 HOH A 60 296 296 HOH HOH . E 5 HOH A 61 299 299 HOH HOH . E 5 HOH A 62 303 303 HOH HOH . E 5 HOH A 63 304 304 HOH HOH . E 5 HOH A 64 307 307 HOH HOH . E 5 HOH A 65 308 308 HOH HOH . E 5 HOH A 66 309 309 HOH HOH . E 5 HOH A 67 311 311 HOH HOH . E 5 HOH A 68 313 313 HOH HOH . E 5 HOH A 69 314 314 HOH HOH . E 5 HOH A 70 317 317 HOH HOH . E 5 HOH A 71 321 321 HOH HOH . E 5 HOH A 72 322 322 HOH HOH . E 5 HOH A 73 326 326 HOH HOH . E 5 HOH A 74 327 327 HOH HOH . E 5 HOH A 75 330 330 HOH HOH . E 5 HOH A 76 331 331 HOH HOH . E 5 HOH A 77 332 332 HOH HOH . E 5 HOH A 78 333 333 HOH HOH . E 5 HOH A 79 335 335 HOH HOH . E 5 HOH A 80 339 339 HOH HOH . E 5 HOH A 81 340 340 HOH HOH . E 5 HOH A 82 400 400 HOH HOH . E 5 HOH A 83 405 405 HOH HOH . E 5 HOH A 84 412 412 HOH HOH . E 5 HOH A 85 419 419 HOH HOH . E 5 HOH A 86 420 420 HOH HOH . E 5 HOH A 87 421 421 HOH HOH . E 5 HOH A 88 422 422 HOH HOH . E 5 HOH A 89 423 423 HOH HOH . E 5 HOH A 90 424 424 HOH HOH . E 5 HOH A 91 425 425 HOH HOH . E 5 HOH A 92 426 426 HOH HOH . E 5 HOH A 93 427 427 HOH HOH . E 5 HOH A 94 428 428 HOH HOH . E 5 HOH A 95 429 429 HOH HOH . E 5 HOH A 96 430 430 HOH HOH . E 5 HOH A 97 431 431 HOH HOH . E 5 HOH A 98 432 432 HOH HOH . E 5 HOH A 99 433 433 HOH HOH . E 5 HOH A 100 434 434 HOH HOH . E 5 HOH A 101 435 435 HOH HOH . E 5 HOH A 102 436 436 HOH HOH . E 5 HOH A 103 437 437 HOH HOH . E 5 HOH A 104 438 438 HOH HOH . E 5 HOH A 105 439 439 HOH HOH . E 5 HOH A 106 440 440 HOH HOH . E 5 HOH A 107 441 441 HOH HOH . E 5 HOH A 108 442 442 HOH HOH . E 5 HOH A 109 443 443 HOH HOH . E 5 HOH A 110 444 444 HOH HOH . E 5 HOH A 111 445 445 HOH HOH . E 5 HOH A 112 446 446 HOH HOH . E 5 HOH A 113 448 448 HOH HOH . E 5 HOH A 114 449 449 HOH HOH . E 5 HOH A 115 450 450 HOH HOH . E 5 HOH A 116 451 451 HOH HOH . E 5 HOH A 117 452 452 HOH HOH . E 5 HOH A 118 453 453 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 37.447 2.39 11.65 1 4.79 ? CHA HEM 154 A 1 HETATM 2 C CHB HEM . . . C 3 36.751 5.382 8.055 1 4.69 ? CHB HEM 154 A 1 HETATM 3 C CHC HEM . . . C 3 32.301 6.098 9.483 1 4.83 ? CHC HEM 154 A 1 HETATM 4 C CHD HEM . . . C 3 33.065 3.274 13.212 1 5.32 ? CHD HEM 154 A 1 HETATM 5 C C1A HEM . . . C 3 37.648 3.136 10.495 1 4.9 ? C1A HEM 154 A 1 HETATM 6 C C2A HEM . . . C 3 38.828 3.106 9.758 1 5.21 ? C2A HEM 154 A 1 HETATM 7 C C3A HEM . . . C 3 38.61 3.968 8.707 1 4.99 ? C3A HEM 154 A 1 HETATM 8 C C4A HEM . . . C 3 37.331 4.46 8.897 1 4.92 ? C4A HEM 154 A 1 HETATM 9 C CMA HEM . . . C 3 39.569 4.296 7.567 1 5.49 ? CMA HEM 154 A 1 HETATM 10 C CAA HEM . . . C 3 40.083 2.276 10.015 1 4.7 ? CAA HEM 154 A 1 HETATM 11 C CBA HEM . . . C 3 40.194 1.064 9.094 1 6.55 ? CBA HEM 154 A 1 HETATM 12 C CGA HEM . . . C 3 38.944 0.187 9.085 1 6.44 ? CGA HEM 154 A 1 HETATM 13 O O1A HEM . . . C 3 38.642 -0.446 10.099 1 7.48 ? O1A HEM 154 A 1 HETATM 14 O O2A HEM . . . C 3 38.293 0.116 8.045 1 7.76 ? O2A HEM 154 A 1 HETATM 15 C C1B HEM . . . C 3 35.437 5.811 8.083 1 4.55 ? C1B HEM 154 A 1 HETATM 16 C C2B HEM . . . C 3 34.894 6.662 7.129 1 4.51 ? C2B HEM 154 A 1 HETATM 17 C C3B HEM . . . C 3 33.606 6.877 7.562 1 4.26 ? C3B HEM 154 A 1 HETATM 18 C C4B HEM . . . C 3 33.463 6.125 8.72 1 4.41 ? C4B HEM 154 A 1 HETATM 19 C CMB HEM . . . C 3 35.555 7.178 5.846 1 4.09 ? CMB HEM 154 A 1 HETATM 20 C CAB HEM . . . C 3 32.626 7.655 6.945 1 4.03 ? CAB HEM 154 A 1 HETATM 21 C CBB HEM . . . C 3 32.892 8.928 6.297 1 4 ? CBB HEM 154 A 1 HETATM 22 C C1C HEM . . . C 3 32.104 5.382 10.649 1 4.23 ? C1C HEM 154 A 1 HETATM 23 C C2C HEM . . . C 3 30.971 5.522 11.445 1 4.83 ? C2C HEM 154 A 1 HETATM 24 C C3C HEM . . . C 3 31.217 4.708 12.542 1 5.61 ? C3C HEM 154 A 1 HETATM 25 C C4C HEM . . . C 3 32.457 4.143 12.319 1 4.99 ? C4C HEM 154 A 1 HETATM 26 C CMC HEM . . . C 3 29.745 6.387 11.16 1 4.74 ? CMC HEM 154 A 1 HETATM 27 C CAC HEM . . . C 3 30.391 4.429 13.634 1 5.81 ? CAC HEM 154 A 1 HETATM 28 C CBC HEM . . . C 3 29.14 5.108 13.939 1 5.99 ? CBC HEM 154 A 1 HETATM 29 C C1D HEM . . . C 3 34.341 2.757 13.1 1 5.67 ? C1D HEM 154 A 1 HETATM 30 C C2D HEM . . . C 3 34.899 1.915 14.045 1 5.53 ? C2D HEM 154 A 1 HETATM 31 C C3D HEM . . . C 3 36.202 1.745 13.645 1 5.81 ? C3D HEM 154 A 1 HETATM 32 C C4D HEM . . . C 3 36.298 2.382 12.418 1 4.77 ? C4D HEM 154 A 1 HETATM 33 C CMD HEM . . . C 3 34.226 1.355 15.283 1 6.67 ? CMD HEM 154 A 1 HETATM 34 C CAD HEM . . . C 3 37.32 1.127 14.449 1 7.88 ? CAD HEM 154 A 1 HETATM 35 C CBD HEM . . . C 3 37.874 2.106 15.471 1 10.23 ? CBD HEM 154 A 1 HETATM 36 C CGD HEM . . . C 3 39.043 1.536 16.25 1 12.9 ? CGD HEM 154 A 1 HETATM 37 O O1D HEM . . . C 3 38.888 1.309 17.446 1 14.42 ? O1D HEM 154 A 1 HETATM 38 O O2D HEM . . . C 3 40.156 1.597 15.741 1 14.37 ? O2D HEM 154 A 1 HETATM 39 N NA HEM . . . C 3 36.704 3.923 9.957 1 4.98 ? NA HEM 154 A 1 HETATM 40 N NB HEM . . . C 3 34.563 5.427 9.017 1 4.89 ? NB HEM 154 A 1 HETATM 41 N NC HEM . . . C 3 33.006 4.513 11.147 1 5.48 ? NC HEM 154 A 1 HETATM 42 N ND HEM . . . C 3 35.164 3.018 12.063 1 5 ? ND HEM 154 A 1 HETATM 43 FE FE HEM . . . C 3 34.801 4.074 10.439 1 4.64 ? FE HEM 154 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #